Wall clock time and date at job start Sun Mar 7 2021 03:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34708 * 116.99937 * 2 1 4 4 O 1.21470 * 120.00486 * 359.97438 * 3 2 1 5 5 C 1.47732 * 119.99640 * 179.97438 * 3 2 1 6 6 C 1.39606 * 120.14588 * 154.38563 * 5 3 2 7 7 C 1.50703 * 120.07827 * 359.95503 * 6 5 3 8 8 H 1.08995 * 112.84911 * 342.63703 * 7 6 5 9 9 C 1.53783 * 113.61410 * 113.83131 * 7 6 5 10 10 C 1.53781 * 87.07980 * 139.98083 * 9 7 6 11 11 H 1.09001 * 113.61212 * 219.93679 * 10 9 7 12 12 N 1.46497 * 113.61545 * 89.11502 * 10 9 7 13 13 C 1.34770 * 120.00079 * 154.99745 * 12 10 9 14 14 O 1.21281 * 120.00186 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00195 * 180.02562 * 13 12 10 16 16 C 1.53129 * 109.79542 * 278.46947 * 15 13 12 17 17 C 1.53039 * 108.68295 * 179.68301 * 16 15 13 18 18 C 1.50206 * 110.32149 * 49.44085 * 17 16 15 19 19 C 1.50699 * 118.54783 * 159.94407 * 18 17 16 20 20 O 1.42899 * 109.46865 * 69.98645 * 19 18 17 21 21 Si 1.86303 * 109.46864 * 189.98267 * 19 18 17 22 22 C 1.31123 * 122.90385 * 339.93135 * 18 17 16 23 23 N 1.38926 * 121.84710 * 0.42289 * 22 18 17 24 24 C 1.53785 * 87.08403 * 334.56572 * 10 9 7 25 25 C 1.37970 * 119.84613 * 180.23291 * 6 5 3 26 26 C 1.38350 * 120.14832 * 359.49030 * 25 6 5 27 27 C 1.38393 * 120.30010 * 0.51071 * 26 25 6 28 28 C 1.37920 * 120.15194 * 359.74741 * 27 26 25 29 29 H 1.09004 * 109.46214 * 60.00460 * 1 2 3 30 30 H 1.08998 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47249 * 300.00540 * 1 2 3 32 32 H 1.09006 * 113.61234 * 25.43364 * 9 7 6 33 33 H 1.08991 * 113.69329 * 254.54384 * 9 7 6 34 34 H 0.96999 * 119.99782 * 334.99987 * 12 10 9 35 35 H 1.09001 * 109.86572 * 39.10536 * 15 13 12 36 36 H 1.09003 * 109.66720 * 59.86000 * 16 15 13 37 37 H 1.08999 * 109.60841 * 299.47089 * 16 15 13 38 38 H 1.09005 * 109.33074 * 289.18575 * 17 16 15 39 39 H 1.08993 * 109.19189 * 169.61536 * 17 16 15 40 40 H 1.08997 * 109.47228 * 309.98205 * 19 18 17 41 41 H 0.96698 * 114.00060 * 179.97438 * 20 19 18 42 42 H 1.48496 * 109.99970 * 300.00114 * 21 19 18 43 43 H 1.48501 * 109.99999 * 61.32457 * 21 19 18 44 44 H 1.07992 * 119.07379 * 180.40036 * 22 18 17 45 45 H 0.96996 * 120.55751 * 166.69541 * 23 22 18 46 46 H 1.08998 * 113.61499 * 139.97598 * 24 10 9 47 47 H 1.08997 * 113.61292 * 270.88698 * 24 10 9 48 48 H 1.08000 * 119.92815 * 179.74843 * 25 6 5 49 49 H 1.07994 * 119.84962 * 180.23679 * 26 25 6 50 50 H 1.08008 * 119.91911 * 179.76720 * 27 26 25 51 51 H 1.08004 * 120.07575 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2775 0.0006 6 6 4.1823 2.4012 -0.5213 7 6 3.3735 3.5394 -1.0883 8 1 2.3449 3.2571 -1.3125 9 6 3.4926 4.8422 -0.2800 10 6 3.5292 5.5824 -1.6275 11 1 4.2389 6.4093 -1.6523 12 7 2.2040 5.9547 -2.1287 13 6 2.0715 6.9952 -2.9750 14 8 3.0494 7.6230 -3.3219 15 6 0.7082 7.3786 -3.4901 16 6 0.3237 6.4731 -4.6636 17 6 -1.0657 6.8786 -5.1610 18 6 -1.1311 8.3644 -5.3719 19 6 -2.2086 8.9177 -6.2685 20 8 -3.4794 8.7728 -5.6312 21 14 -1.8794 10.7223 -6.5941 22 6 -0.2923 9.2012 -4.8102 23 7 0.7316 8.7653 -3.9786 24 6 4.0755 4.2810 -2.2382 25 6 5.5606 2.4647 -0.5220 26 6 6.3045 1.4228 0.0024 27 6 5.6730 0.3060 0.5213 28 6 4.2960 0.2271 0.5235 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.4204 4.9211 0.2868 33 1 2.6104 5.0685 0.3186 34 1 1.4219 5.4524 -1.8515 35 1 -0.0299 7.2796 -2.6942 36 1 0.3059 5.4340 -4.3347 37 1 1.0492 6.5898 -5.4687 38 1 -1.8127 6.5858 -4.4232 39 1 -1.2711 6.3711 -6.1034 40 1 -2.2112 8.3728 -7.2124 41 1 -4.2214 9.1090 -6.1523 42 1 -1.8733 11.4763 -5.3148 43 1 -0.5750 10.8840 -7.2853 44 1 -0.4003 10.2589 -4.9996 45 1 1.4519 9.3644 -3.7276 46 1 3.6629 4.0530 -3.2210 47 1 5.1625 4.2065 -2.2066 48 1 6.0598 3.3316 -0.9291 49 1 7.3829 1.4792 0.0029 50 1 6.2599 -0.5055 0.9258 51 1 3.8045 -0.6448 0.9292 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15105874_15413834.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:27:33 Heat of formation + Delta-G solvation = -63.604453 kcal Electronic energy + Delta-G solvation = -33989.519838 eV Core-core repulsion = 29436.025357 eV Total energy + Delta-G solvation = -4553.494481 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.177 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.16805 -41.55817 -40.58584 -39.62507 -38.73845 -37.54288 -37.35202 -34.85686 -33.43284 -33.17668 -32.61175 -31.73331 -28.75330 -27.84894 -26.80351 -26.23431 -25.47421 -24.88191 -23.85306 -23.01623 -22.02670 -21.85731 -20.30254 -19.35861 -19.19367 -19.03389 -18.23707 -18.19412 -17.77709 -17.54695 -17.25432 -16.94306 -16.48990 -16.17739 -15.97377 -15.67448 -15.56531 -15.31724 -15.22368 -14.88337 -14.78324 -14.55635 -14.49961 -14.22259 -14.18234 -14.00871 -13.80875 -13.74934 -13.53936 -13.17956 -13.17376 -12.98520 -12.92964 -12.50261 -12.48243 -12.31034 -11.98747 -11.83944 -11.80595 -11.76807 -11.47227 -11.45209 -11.07838 -11.00147 -10.25527 -10.10245 -10.06263 -9.76379 -8.64460 -4.93468 -0.31405 0.30250 1.13743 1.28842 1.35690 1.36997 1.63289 1.67427 1.72741 1.96481 2.45075 2.66769 3.35063 3.37110 3.52178 3.53142 3.57739 3.66300 3.69400 3.82786 3.84925 3.92376 3.95141 4.10509 4.13184 4.14342 4.24603 4.28209 4.29314 4.35607 4.40639 4.50314 4.54461 4.57250 4.65532 4.66404 4.67900 4.76321 4.78924 4.85541 4.88983 4.93724 4.99931 5.05451 5.09788 5.14081 5.21753 5.28576 5.37461 5.41827 5.45475 5.59043 5.85472 6.06294 6.29777 6.59630 6.59777 6.95225 7.02390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.505 3.495 4 O -0.518 6.518 5 C -0.147 4.147 6 C -0.020 4.020 7 C -0.083 4.083 8 H 0.107 0.893 9 C -0.118 4.118 10 C 0.118 3.882 11 H 0.094 0.906 12 N -0.695 5.695 13 C 0.519 3.481 14 O -0.569 6.569 15 C 0.138 3.862 16 C -0.122 4.122 17 C -0.051 4.051 18 C -0.243 4.243 19 C -0.052 4.052 20 O -0.567 6.567 21 Si 0.755 3.245 22 C 0.117 3.883 23 N -0.738 5.738 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.079 4.079 27 C -0.137 4.137 28 C -0.069 4.069 29 H 0.065 0.935 30 H 0.128 0.872 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.396 0.604 42 H -0.298 1.298 43 H -0.297 1.297 44 H 0.119 0.881 45 H 0.405 0.595 46 H 0.067 0.933 47 H 0.109 0.891 48 H 0.150 0.850 49 H 0.155 0.845 50 H 0.154 0.846 51 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -5.283 0.059 5.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.352 3.648 4 O -0.409 6.409 5 C -0.148 4.148 6 C -0.021 4.021 7 C -0.101 4.101 8 H 0.125 0.875 9 C -0.156 4.156 10 C 0.012 3.988 11 H 0.112 0.888 12 N -0.346 5.346 13 C 0.305 3.695 14 O -0.448 6.448 15 C 0.030 3.970 16 C -0.161 4.161 17 C -0.088 4.088 18 C -0.253 4.253 19 C -0.164 4.164 20 O -0.376 6.376 21 Si 0.663 3.337 22 C -0.003 4.003 23 N -0.371 5.371 24 C -0.179 4.179 25 C -0.152 4.152 26 C -0.097 4.097 27 C -0.155 4.155 28 C -0.087 4.087 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.247 0.753 42 H -0.227 1.227 43 H -0.225 1.225 44 H 0.136 0.864 45 H 0.241 0.759 46 H 0.086 0.914 47 H 0.127 0.873 48 H 0.167 0.833 49 H 0.172 0.828 50 H 0.171 0.829 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.150 -4.284 0.469 4.312 hybrid contribution -0.063 -0.228 0.471 0.528 sum 0.087 -4.512 0.940 4.610 Atomic orbital electron populations 1.23560 0.74350 1.05728 1.02719 1.86571 1.25155 1.32192 1.83792 1.21520 0.89608 0.81517 0.72193 1.90747 1.67427 1.36231 1.46512 1.19101 0.88687 0.98164 1.08854 1.19865 0.94431 0.92927 0.94837 1.21902 0.99862 0.91803 0.96540 0.87492 1.23266 1.04037 0.92934 0.95345 1.21863 0.84731 0.97016 0.95178 0.88763 1.45561 1.10435 1.32078 1.46502 1.20733 0.90805 0.79897 0.78063 1.90710 1.41174 1.53986 1.58907 1.21010 0.93683 0.84103 0.98253 1.21793 0.98207 0.99502 0.96577 1.19991 0.95383 0.91286 1.02113 1.20495 1.01657 0.96237 1.06949 1.24533 0.84824 1.10391 0.96608 1.86462 1.16073 1.86382 1.48680 0.94684 0.83623 0.75636 0.79764 1.20335 0.90941 0.96507 0.92522 1.44289 1.27194 1.11600 1.54032 1.23617 1.01919 0.94492 0.97829 1.21270 0.92129 1.00661 1.01115 1.21819 1.01839 0.92392 0.93667 1.21505 0.93925 0.99609 1.00445 1.21606 0.94768 0.96682 0.95678 0.91650 0.85347 0.91783 0.87486 0.90672 0.74822 0.87731 0.88024 0.92044 0.90818 0.89836 0.90045 0.75334 1.22675 1.22505 0.86369 0.75885 0.91400 0.87269 0.83254 0.82766 0.82869 0.83860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.57 113.37 1.20 1.13 16 2 O -0.36 -1.12 10.12 -56.18 -0.57 -1.69 16 3 C 0.51 2.67 7.47 70.33 0.53 3.19 16 4 O -0.52 -4.11 13.61 19.93 0.27 -3.84 16 5 C -0.15 -0.45 5.86 -20.10 -0.12 -0.56 16 6 C -0.02 -0.02 5.31 -19.60 -0.10 -0.13 16 7 C -0.08 -0.05 3.02 -11.01 -0.03 -0.08 16 8 H 0.11 0.37 5.45 -2.39 -0.01 0.36 16 9 C -0.12 0.08 7.32 31.12 0.23 0.31 16 10 C 0.12 0.10 4.32 45.52 0.20 0.30 16 11 H 0.09 0.36 7.46 -2.39 -0.02 0.34 16 12 N -0.69 -0.56 5.26 -440.04 -2.32 -2.88 16 13 C 0.52 2.89 7.08 87.66 0.62 3.51 16 14 O -0.57 -7.58 15.70 -3.03 -0.05 -7.63 16 15 C 0.14 0.47 3.34 44.19 0.15 0.62 16 16 C -0.12 -0.20 5.45 30.65 0.17 -0.04 16 17 C -0.05 -0.14 5.85 29.71 0.17 0.04 16 18 C -0.24 -1.43 5.40 -16.77 -0.09 -1.52 16 19 C -0.05 -0.08 2.80 71.24 0.20 0.12 16 20 O -0.57 -0.88 12.86 -148.98 -1.92 -2.80 16 21 Si 0.75 0.52 29.92 68.60 2.05 2.57 16 22 C 0.12 0.90 9.62 83.41 0.80 1.70 16 23 N -0.74 -5.20 5.47 -329.66 -1.80 -7.00 16 24 C -0.14 0.09 7.24 31.12 0.23 0.31 16 25 C -0.13 0.33 8.94 22.23 0.20 0.53 16 26 C -0.08 0.34 10.04 22.33 0.22 0.56 16 27 C -0.14 0.48 10.03 22.23 0.22 0.70 16 28 C -0.07 0.02 9.61 22.53 0.22 0.24 16 29 H 0.06 -0.14 8.14 -2.38 -0.02 -0.16 16 30 H 0.13 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H 0.06 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.11 -0.28 7.93 -2.38 -0.02 -0.30 16 33 H 0.07 0.05 8.14 -2.39 -0.02 0.04 16 34 H 0.41 -1.16 8.70 -92.71 -0.81 -1.97 16 35 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 38 H 0.07 0.20 8.14 -2.38 -0.02 0.18 16 39 H 0.08 0.08 8.14 -2.39 -0.02 0.07 16 40 H 0.08 -0.14 7.96 -2.39 -0.02 -0.16 16 41 H 0.40 -3.39 8.74 -74.06 -0.65 -4.04 16 42 H -0.30 -2.32 6.88 99.48 0.68 -1.64 16 43 H -0.30 -2.13 7.11 99.48 0.71 -1.43 16 44 H 0.12 0.93 4.34 -2.91 -0.01 0.91 16 45 H 0.41 3.12 8.12 -92.71 -0.75 2.37 16 46 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 47 H 0.11 -0.36 6.02 -2.39 -0.01 -0.37 16 48 H 0.15 -0.92 6.28 -2.91 -0.02 -0.93 16 49 H 0.15 -1.41 8.06 -2.91 -0.02 -1.44 16 50 H 0.15 -1.24 8.06 -2.91 -0.02 -1.26 16 51 H 0.14 -0.38 7.86 -2.91 -0.02 -0.40 16 Total: 0.00 -22.66 412.58 -0.52 -23.18 By element: Atomic # 1 Polarization: -9.67 SS G_CDS: -1.19 Total: -10.86 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 5.00 Total: 10.95 kcal Atomic # 7 Polarization: -5.76 SS G_CDS: -4.12 Total: -9.88 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -2.26 Total: -15.96 kcal Atomic # 14 Polarization: 0.52 SS G_CDS: 2.05 Total: 2.57 kcal Total: -22.66 -0.52 -23.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15105874_15413834.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.424 kcal (2) G-P(sol) polarization free energy of solvation -22.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds