Wall clock time and date at job start Sun Mar 7 2021 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34717 * 116.99871 * 2 1 4 4 O 1.21462 * 120.00085 * 359.97438 * 3 2 1 5 5 C 1.47725 * 119.99683 * 179.97438 * 3 2 1 6 6 C 1.39605 * 120.14673 * 185.97755 * 5 3 2 7 7 C 1.50698 * 120.07855 * 359.97438 * 6 5 3 8 8 H 1.09001 * 112.84388 * 33.23990 * 7 6 5 9 9 C 1.53782 * 113.61438 * 164.53887 * 7 6 5 10 10 C 1.53781 * 87.08059 * 139.98632 * 9 7 6 11 11 H 1.08994 * 113.69589 * 220.01062 * 10 9 7 12 12 N 1.46501 * 113.61290 * 89.11392 * 10 9 7 13 13 C 1.34786 * 119.99544 * 107.50304 * 12 10 9 14 14 O 1.21688 * 120.00052 * 0.02562 * 13 12 10 15 15 C 1.46674 * 119.99651 * 179.97438 * 13 12 10 16 16 C 1.37875 * 126.23399 * 180.02562 * 15 13 12 17 17 C 1.39830 * 107.09038 * 179.97438 * 16 15 13 18 18 C 1.35457 * 107.86108 * 0.02562 * 17 16 15 19 19 C 1.50705 * 125.56388 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47264 * 245.02998 * 19 18 17 21 21 Si 1.86299 * 109.46884 * 5.02463 * 19 18 17 22 22 N 1.35532 * 108.87600 * 359.76842 * 18 17 16 23 23 C 1.53778 * 113.61910 * 262.04306 * 7 6 5 24 24 C 1.37969 * 119.84696 * 179.75158 * 6 5 3 25 25 C 1.38351 * 120.14917 * 0.54437 * 24 6 5 26 26 C 1.38392 * 120.30094 * 359.70750 * 25 24 6 27 27 C 1.37924 * 120.14985 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.46829 * 59.99754 * 1 2 3 29 29 H 1.09001 * 109.47068 * 300.00488 * 1 2 3 30 30 H 1.08999 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.09000 * 113.61292 * 254.53558 * 9 7 6 32 32 H 1.08999 * 113.61718 * 25.44074 * 9 7 6 33 33 H 0.96994 * 120.00658 * 287.50343 * 12 10 9 34 34 H 1.08008 * 126.45387 * 0.02562 * 16 15 13 35 35 H 1.07997 * 126.07066 * 180.02562 * 17 16 15 36 36 H 1.08994 * 109.47120 * 125.02171 * 19 18 17 37 37 H 0.96704 * 114.00577 * 59.99520 * 20 19 18 38 38 H 1.48500 * 110.00256 * 58.68128 * 21 19 18 39 39 H 1.48507 * 110.00021 * 180.02562 * 21 19 18 40 40 H 0.96991 * 125.68296 * 180.25973 * 22 18 17 41 41 H 1.09002 * 113.61366 * 334.56108 * 23 7 6 42 42 H 1.08991 * 113.61742 * 105.47219 * 23 7 6 43 43 H 1.07999 * 119.92857 * 180.27409 * 24 6 5 44 44 H 1.07994 * 119.85141 * 179.72651 * 25 24 6 45 45 H 1.07998 * 119.92290 * 180.02562 * 26 25 24 46 46 H 1.08006 * 120.07395 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4021 2.2190 -0.0005 5 6 3.5389 1.2776 0.0006 6 6 4.1762 2.5133 0.1263 7 6 3.3607 3.7734 0.2614 8 1 2.4278 3.6177 0.8031 9 6 4.1712 4.9811 0.7610 10 6 3.3812 5.8295 -0.2494 11 1 3.9862 6.5786 -0.7601 12 7 2.1350 6.3774 0.2920 13 6 2.0418 7.6932 0.5693 14 8 2.9926 8.4259 0.3696 15 6 0.7940 8.2418 1.1108 16 6 0.5579 9.5601 1.4384 17 6 -0.7547 9.6365 1.9145 18 6 -1.2856 8.3911 1.8709 19 6 -2.6831 8.0187 2.2944 20 8 -2.6219 7.1485 3.4262 21 14 -3.6264 9.5602 2.7468 22 7 -0.3563 7.5353 1.3800 23 6 3.1849 4.5382 -1.0611 24 6 5.5543 2.5778 0.1312 25 6 6.3045 1.4226 0.0007 26 6 5.6791 0.1950 -0.1296 27 6 4.3021 0.1156 -0.1306 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.9712 5.2412 1.8004 32 1 5.2360 4.9150 0.5375 33 1 1.3770 5.7935 0.4508 34 1 1.2551 10.3796 1.3443 35 1 -1.2561 10.5299 2.2563 36 1 -3.1887 7.5113 1.4729 37 1 -2.1838 7.5353 4.1967 38 1 -3.6699 10.4876 1.5878 39 1 -5.0062 9.2065 3.1669 40 1 -0.4806 6.5832 1.2425 41 1 3.9801 4.3511 -1.7828 42 1 2.1888 4.4410 -1.4926 43 1 6.0487 3.5326 0.2329 44 1 7.3829 1.4792 0.0007 45 1 6.2706 -0.7029 -0.2307 46 1 3.8154 -0.8431 -0.2328 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15105874_6580494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:29:25 Heat of formation + Delta-G solvation = -38.499796 kcal Electronic energy + Delta-G solvation = -31322.060760 eV Core-core repulsion = 26952.503996 eV Total energy + Delta-G solvation = -4369.556764 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.59641 -42.05126 -41.02204 -39.99048 -38.76682 -37.68925 -37.54103 -34.80946 -32.63724 -32.33070 -31.86885 -31.17989 -28.77051 -27.29179 -26.86516 -26.09072 -24.82469 -23.76023 -22.78672 -21.92229 -21.61477 -21.19074 -20.27241 -19.88316 -19.07258 -18.24715 -18.05698 -17.48204 -17.36880 -16.86046 -16.73938 -16.42279 -16.13039 -15.94299 -15.66640 -15.40315 -15.29476 -15.13603 -14.95681 -14.60354 -14.50539 -14.41634 -14.21636 -13.98513 -13.81944 -13.71037 -13.54815 -13.21963 -13.15111 -12.94814 -12.47152 -12.32461 -12.22710 -12.08615 -11.86817 -11.81438 -11.47448 -11.39131 -10.96963 -10.67756 -10.30696 -10.10539 -10.08048 -9.78263 -9.31524 -4.92082 -0.36971 0.25510 0.30688 1.21704 1.44257 1.51676 1.64419 1.71746 1.86884 1.94670 2.18270 2.21918 2.69293 3.33891 3.44842 3.50604 3.57495 3.60758 3.65313 3.72877 3.80791 3.92305 4.10105 4.14512 4.22273 4.23169 4.26089 4.27925 4.35974 4.39993 4.41488 4.56984 4.62967 4.67037 4.75377 4.78439 4.86322 4.92651 4.94095 4.99733 5.05760 5.09550 5.23365 5.27638 5.36616 5.45352 5.55850 5.60659 5.77817 5.85079 6.21106 6.37984 6.60625 6.65896 6.96354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.361 6.361 3 C 0.504 3.496 4 O -0.520 6.520 5 C -0.151 4.151 6 C -0.017 4.017 7 C -0.077 4.077 8 H 0.109 0.891 9 C -0.144 4.144 10 C 0.118 3.882 11 H 0.097 0.903 12 N -0.702 5.702 13 C 0.591 3.409 14 O -0.566 6.566 15 C -0.068 4.068 16 C -0.113 4.113 17 C -0.202 4.202 18 C 0.027 3.973 19 C -0.059 4.059 20 O -0.555 6.555 21 Si 0.810 3.190 22 N -0.516 5.516 23 C -0.118 4.118 24 C -0.139 4.139 25 C -0.076 4.076 26 C -0.140 4.140 27 C -0.066 4.066 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.405 0.595 34 H 0.150 0.850 35 H 0.174 0.826 36 H 0.113 0.887 37 H 0.399 0.601 38 H -0.285 1.285 39 H -0.295 1.295 40 H 0.424 0.576 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.154 0.846 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -4.420 2.048 4.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.278 6.278 3 C 0.351 3.649 4 O -0.411 6.411 5 C -0.152 4.152 6 C -0.018 4.018 7 C -0.095 4.095 8 H 0.127 0.873 9 C -0.182 4.182 10 C 0.013 3.987 11 H 0.115 0.885 12 N -0.352 5.352 13 C 0.380 3.620 14 O -0.445 6.445 15 C -0.182 4.182 16 C -0.140 4.140 17 C -0.226 4.226 18 C -0.092 4.092 19 C -0.168 4.168 20 O -0.363 6.363 21 Si 0.714 3.286 22 N -0.113 5.113 23 C -0.156 4.156 24 C -0.156 4.156 25 C -0.093 4.093 26 C -0.157 4.157 27 C -0.084 4.084 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.241 0.759 34 H 0.167 0.833 35 H 0.191 0.809 36 H 0.130 0.870 37 H 0.250 0.750 38 H -0.211 1.211 39 H -0.222 1.222 40 H 0.263 0.737 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.170 0.830 44 H 0.173 0.827 45 H 0.172 0.828 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.070 -3.730 1.278 3.943 hybrid contribution -0.547 -1.267 -0.593 1.502 sum -0.617 -4.997 0.685 5.081 Atomic orbital electron populations 1.23529 0.74432 1.05661 1.02560 1.86545 1.25052 1.32258 1.83932 1.21517 0.89656 0.81471 0.72246 1.90716 1.67444 1.35988 1.46999 1.19081 0.88664 0.95519 1.11949 1.19899 0.94480 0.92800 0.94599 1.21860 0.98913 0.90143 0.98579 0.87292 1.23667 1.00725 0.94310 0.99481 1.21860 0.85730 0.95160 0.95941 0.88476 1.45508 1.16418 1.07889 1.65418 1.17239 0.85928 0.81962 0.76836 1.90831 1.39087 1.59626 1.54928 1.20330 0.88292 0.93648 1.15888 1.21515 0.97391 0.94353 1.00734 1.20969 0.95300 0.97072 1.09247 1.21418 0.93259 0.90588 1.03911 1.25131 0.93605 1.06757 0.91325 1.86478 1.82311 1.43695 1.23860 0.92931 0.76402 0.73963 0.85309 1.41965 1.09971 1.10879 1.48501 1.23218 1.03318 0.92840 0.96183 1.21376 0.92131 1.00524 1.01603 1.21851 1.01890 0.91921 0.93667 1.21525 0.94010 0.99477 1.00718 1.21659 0.94714 0.97658 0.94333 0.91876 0.91836 0.85372 0.91360 0.86809 0.75923 0.83266 0.80912 0.86960 0.75046 1.21143 1.22227 0.73701 0.87704 0.91160 0.83047 0.82670 0.82834 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.57 113.37 1.20 1.14 16 2 O -0.36 -1.14 9.84 -56.27 -0.55 -1.69 16 3 C 0.50 2.70 7.85 70.33 0.55 3.25 16 4 O -0.52 -3.96 13.05 19.96 0.26 -3.70 16 5 C -0.15 -0.47 5.87 -20.10 -0.12 -0.59 16 6 C -0.02 -0.03 5.35 -19.60 -0.10 -0.13 16 7 C -0.08 -0.11 2.66 -11.01 -0.03 -0.14 16 8 H 0.11 0.49 5.79 -2.39 -0.01 0.48 16 9 C -0.14 -0.03 7.14 31.12 0.22 0.19 16 10 C 0.12 0.30 4.33 45.52 0.20 0.50 16 11 H 0.10 0.51 7.46 -2.39 -0.02 0.49 16 12 N -0.70 -2.25 5.26 -443.99 -2.33 -4.59 16 13 C 0.59 5.08 7.79 86.44 0.67 5.75 16 14 O -0.57 -9.06 16.48 -4.31 -0.07 -9.13 16 15 C -0.07 -0.38 7.06 40.35 0.28 -0.10 16 16 C -0.11 -0.59 10.65 22.57 0.24 -0.35 16 17 C -0.20 -0.08 9.32 22.01 0.21 0.12 16 18 C 0.03 -0.01 6.46 41.35 0.27 0.26 16 19 C -0.06 0.17 3.08 71.24 0.22 0.39 16 20 O -0.56 1.34 12.88 -148.98 -1.92 -0.58 16 21 Si 0.81 -3.50 30.56 68.60 2.10 -1.40 16 22 N -0.52 -0.32 5.99 -171.92 -1.03 -1.35 16 23 C -0.12 -0.10 7.32 31.12 0.23 0.13 16 24 C -0.14 0.30 9.27 22.23 0.21 0.50 16 25 C -0.08 0.31 10.04 22.33 0.22 0.54 16 26 C -0.14 0.49 10.03 22.23 0.22 0.71 16 27 C -0.07 0.02 9.62 22.54 0.22 0.24 16 28 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.13 -0.93 8.14 -2.39 -0.02 -0.94 16 31 H 0.07 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.11 -0.36 5.67 -2.39 -0.01 -0.37 16 33 H 0.41 -0.12 7.83 -92.71 -0.73 -0.84 16 34 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.17 -0.85 6.19 -2.91 -0.02 -0.87 16 36 H 0.11 -0.28 7.96 -2.39 -0.02 -0.30 16 37 H 0.40 -3.90 8.70 -74.05 -0.64 -4.54 16 38 H -0.28 -0.34 7.11 99.48 0.71 0.36 16 39 H -0.29 -0.78 7.11 99.48 0.71 -0.08 16 40 H 0.42 -1.26 8.19 -92.72 -0.76 -2.01 16 41 H 0.10 -0.10 8.09 -2.39 -0.02 -0.11 16 42 H 0.07 0.19 8.14 -2.39 -0.02 0.17 16 43 H 0.15 -0.86 5.69 -2.91 -0.02 -0.88 16 44 H 0.16 -1.43 8.06 -2.91 -0.02 -1.45 16 45 H 0.15 -1.25 8.06 -2.91 -0.02 -1.27 16 46 H 0.14 -0.36 7.63 -2.91 -0.02 -0.38 16 Total: 0.00 -22.27 386.75 0.33 -21.94 By element: Atomic # 1 Polarization: -10.89 SS G_CDS: -1.02 Total: -11.91 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.90 Total: 12.41 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: -3.37 Total: -5.94 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -2.28 Total: -15.10 kcal Atomic # 14 Polarization: -3.50 SS G_CDS: 2.10 Total: -1.40 kcal Total: -22.27 0.33 -21.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15105874_6580494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.557 kcal (2) G-P(sol) polarization free energy of solvation -22.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds