Wall clock time and date at job start Sun Mar 7 2021 03:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35537 * 125.67297 * 2 1 4 4 C 1.35457 * 108.86606 * 180.26134 * 3 2 1 5 5 C 1.50704 * 126.06730 * 179.78564 * 4 3 2 6 6 O 1.42897 * 109.47028 * 300.00695 * 5 4 3 7 7 Si 1.86295 * 109.47221 * 180.02562 * 5 4 3 8 8 C 1.39834 * 107.86586 * 359.77100 * 4 3 2 9 9 C 1.37648 * 125.67810 * 179.86809 * 2 1 3 10 10 C 1.46678 * 126.23531 * 0.02562 * 9 2 1 11 11 O 1.21683 * 120.00255 * 173.14008 * 10 9 2 12 12 N 1.34780 * 119.99281 * 353.14081 * 10 9 2 13 13 C 1.46503 * 119.99399 * 175.82742 * 12 10 9 14 14 C 1.52998 * 109.47397 * 184.90859 * 13 12 10 15 15 C 1.53006 * 112.84984 * 293.79922 * 14 13 12 16 16 O 1.42897 * 109.46594 * 305.78885 * 15 14 13 17 17 C 1.53782 * 113.61054 * 64.98943 * 14 13 12 18 18 C 1.53777 * 87.08236 * 140.06979 * 17 14 13 19 19 H 1.08996 * 113.61962 * 89.11572 * 18 17 14 20 20 O 1.42898 * 113.61372 * 219.93836 * 18 17 14 21 21 C 1.42907 * 113.99757 * 208.46835 * 20 18 17 22 22 C 1.50703 * 109.46919 * 180.02562 * 21 20 18 23 23 C 1.38231 * 119.99716 * 269.72499 * 22 21 20 24 24 C 1.38234 * 120.00038 * 179.74962 * 23 22 21 25 25 C 1.38240 * 119.99777 * 0.54637 * 24 23 22 26 26 C 1.38232 * 119.99644 * 359.70550 * 25 24 23 27 27 C 1.38231 * 119.99937 * 89.99772 * 22 21 20 28 28 C 1.53775 * 113.69298 * 162.52399 * 14 13 12 29 29 H 1.09002 * 109.47249 * 264.68231 * 1 2 3 30 30 H 1.09003 * 109.47267 * 24.68221 * 1 2 3 31 31 H 1.08997 * 109.47364 * 144.67942 * 1 2 3 32 32 H 1.07999 * 125.56974 * 0.02562 * 3 2 1 33 33 H 1.09006 * 109.46812 * 60.00759 * 5 4 3 34 34 H 0.96697 * 114.00248 * 299.99320 * 6 5 4 35 35 H 1.48504 * 110.00099 * 58.68132 * 7 5 4 36 36 H 1.48496 * 110.00227 * 180.02562 * 7 5 4 37 37 H 1.08002 * 126.45486 * 180.02562 * 8 4 3 38 38 H 0.96993 * 120.00966 * 355.82596 * 12 10 9 39 39 H 1.09007 * 109.47275 * 64.90879 * 13 12 10 40 40 H 1.08998 * 109.47531 * 304.91092 * 13 12 10 41 41 H 1.09003 * 109.46985 * 65.79004 * 15 14 13 42 42 H 1.09001 * 109.46842 * 185.79047 * 15 14 13 43 43 H 0.96698 * 113.99624 * 180.02562 * 16 15 14 44 44 H 1.09000 * 113.61575 * 25.51815 * 17 14 13 45 45 H 1.09006 * 113.68858 * 254.62884 * 17 14 13 46 46 H 1.09005 * 109.47005 * 299.99789 * 21 20 18 47 47 H 1.08999 * 109.47339 * 59.99918 * 21 20 18 48 48 H 1.08003 * 120.00222 * 359.97438 * 23 22 21 49 49 H 1.07998 * 120.00581 * 180.27668 * 24 23 22 50 50 H 1.07995 * 119.99873 * 179.72865 * 25 24 23 51 51 H 1.08000 * 119.99678 * 180.02562 * 26 25 24 52 52 H 1.07999 * 120.00387 * 0.02562 * 27 22 21 53 53 H 1.08996 * 113.61152 * 105.46591 * 28 14 13 54 54 H 1.08997 * 113.61450 * 334.55694 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0058 5 6 4.7536 1.6190 -0.0124 6 8 4.7211 2.4426 -1.1797 7 14 6.3089 0.5934 -0.0197 8 6 3.5779 -0.6887 -0.0043 9 6 2.2678 -1.1181 0.0026 10 6 1.8124 -2.5124 0.0053 11 8 2.6181 -3.4159 -0.1185 12 7 0.5015 -2.7928 0.1448 13 6 0.0355 -4.1789 0.0560 14 6 -1.4926 -4.2087 0.1254 15 6 -2.0347 -3.7558 1.4826 16 8 -1.4306 -4.5316 2.5196 17 6 -2.1769 -3.5255 -1.0703 18 6 -3.2021 -4.6712 -1.0377 19 1 -4.0556 -4.4751 -0.3887 20 8 -3.5855 -5.1334 -2.3343 21 6 -4.9057 -5.6776 -2.3905 22 6 -5.2024 -6.1316 -3.7965 23 6 -5.7798 -5.2569 -4.6978 24 6 -6.0473 -5.6717 -5.9891 25 6 -5.7477 -6.9647 -6.3757 26 6 -5.1751 -7.8409 -5.4728 27 6 -4.9024 -7.4244 -4.1832 28 6 -2.1083 -5.5258 -0.3756 29 1 -0.3634 -0.0952 1.0233 30 1 -0.3634 0.9338 -0.4291 31 1 -0.3634 -0.8385 -0.5941 32 1 1.9081 2.1237 0.0004 33 1 4.7375 2.2487 0.8772 34 1 4.7333 1.9480 -2.0106 35 1 6.3276 -0.2924 -1.2115 36 1 7.5011 1.4787 -0.0256 37 1 4.4583 -1.3143 -0.0075 38 1 -0.1334 -2.0770 0.3040 39 1 0.4482 -4.7548 0.8844 40 1 0.3649 -4.6132 -0.8879 41 1 -1.8008 -2.7020 1.6340 42 1 -3.1154 -3.8953 1.5071 43 1 -1.7286 -4.2985 3.4095 44 1 -1.5665 -3.5114 -1.9732 45 1 -2.6035 -2.5509 -0.8326 46 1 -4.9775 -6.5276 -1.7118 47 1 -5.6260 -4.9148 -2.0949 48 1 -6.0187 -4.2483 -4.3943 49 1 -6.4943 -4.9871 -6.6946 50 1 -5.9607 -7.2901 -7.3832 51 1 -4.9407 -8.8509 -5.7749 52 1 -4.4557 -8.1092 -3.4776 53 1 -2.4793 -6.1664 0.4245 54 1 -1.4791 -6.0585 -1.0885 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15111636_10803934.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:04:14 Heat of formation + Delta-G solvation = -44.408200 kcal Electronic energy + Delta-G solvation = -35571.951576 eV Core-core repulsion = 30863.751888 eV Total energy + Delta-G solvation = -4708.199688 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 387.192 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.64824 -41.46194 -40.29137 -39.93918 -38.11909 -37.86942 -36.73041 -35.73483 -33.92978 -32.77141 -31.83714 -31.06259 -29.44558 -28.52855 -27.31905 -27.04139 -26.67850 -25.68151 -23.77791 -23.52908 -22.67980 -22.29362 -21.38641 -20.88689 -19.63631 -18.94874 -18.45310 -17.98353 -17.72197 -17.40027 -17.16933 -16.96151 -16.81439 -16.55094 -16.44322 -16.25903 -15.89527 -15.68007 -15.59353 -15.47481 -15.22885 -15.09687 -15.00558 -14.50659 -14.31490 -14.09899 -14.03321 -13.92131 -13.87490 -13.59069 -13.41226 -13.39379 -13.18518 -13.05514 -12.84512 -12.72707 -12.38109 -12.14717 -11.98227 -11.87813 -11.77850 -11.72221 -11.46723 -11.29953 -10.85745 -10.56388 -10.45525 -10.30763 -9.87302 -9.80416 -9.75144 -9.24798 -4.87188 0.29561 0.34916 0.44945 1.36071 1.58396 1.61632 1.74010 1.97543 1.99435 2.22451 2.55044 3.02427 3.07482 3.36244 3.50714 3.52479 3.59792 3.64735 3.77872 3.82479 3.88418 3.92089 4.04167 4.05701 4.10520 4.12422 4.18478 4.24447 4.25654 4.32623 4.38994 4.40935 4.48207 4.51357 4.55236 4.59271 4.61489 4.69366 4.72869 4.73100 4.74850 4.82697 4.90109 4.95537 5.03903 5.04505 5.10518 5.11480 5.15267 5.24386 5.50450 5.57475 5.60860 5.61781 5.80907 6.04865 6.15699 6.27203 6.36483 6.56702 6.89313 7.02153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.421 5.421 3 C 0.069 3.931 4 C -0.224 4.224 5 C -0.029 4.029 6 O -0.548 6.548 7 Si 0.744 3.256 8 C -0.118 4.118 9 C -0.076 4.076 10 C 0.585 3.415 11 O -0.576 6.576 12 N -0.714 5.714 13 C 0.145 3.855 14 C -0.088 4.088 15 C 0.097 3.903 16 O -0.590 6.590 17 C -0.118 4.118 18 C 0.065 3.935 19 H 0.114 0.886 20 O -0.386 6.386 21 C 0.102 3.898 22 C -0.108 4.108 23 C -0.111 4.111 24 C -0.134 4.134 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.115 4.115 28 C -0.141 4.141 29 H 0.105 0.895 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.202 0.798 33 H 0.131 0.869 34 H 0.383 0.617 35 H -0.302 1.302 36 H -0.298 1.298 37 H 0.141 0.859 38 H 0.409 0.591 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.399 0.601 44 H 0.083 0.917 45 H 0.106 0.894 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.136 0.864 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.136 0.864 52 H 0.129 0.871 53 H 0.079 0.921 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 4.208 3.843 12.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.096 5.096 3 C -0.068 4.068 4 C -0.230 4.230 5 C -0.141 4.141 6 O -0.355 6.355 7 Si 0.652 3.348 8 C -0.145 4.145 9 C -0.187 4.187 10 C 0.374 3.626 11 O -0.456 6.456 12 N -0.371 5.371 13 C 0.021 3.979 14 C -0.089 4.089 15 C 0.019 3.981 16 O -0.398 6.398 17 C -0.156 4.156 18 C 0.008 3.992 19 H 0.131 0.869 20 O -0.306 6.306 21 C 0.026 3.974 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.152 4.152 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.133 4.133 28 C -0.180 4.180 29 H 0.124 0.876 30 H 0.145 0.855 31 H 0.109 0.891 32 H 0.219 0.781 33 H 0.148 0.852 34 H 0.232 0.768 35 H -0.229 1.229 36 H -0.226 1.226 37 H 0.158 0.842 38 H 0.251 0.749 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.249 0.751 44 H 0.102 0.898 45 H 0.124 0.876 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.154 0.846 49 H 0.157 0.843 50 H 0.156 0.844 51 H 0.154 0.846 52 H 0.147 0.853 53 H 0.097 0.903 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.574 3.482 3.117 10.653 hybrid contribution -0.565 0.157 -0.671 0.891 sum -10.139 3.639 2.447 11.046 Atomic orbital electron populations 1.22800 0.74632 1.07103 1.05643 1.44208 1.07615 1.04628 1.53100 1.22288 0.89303 0.92474 1.02716 1.19784 0.95552 0.92951 1.14686 1.24181 1.01814 0.97288 0.90800 1.86533 1.95732 1.36621 1.16648 0.94121 0.74359 0.78203 0.88147 1.21280 0.95117 0.94915 1.03183 1.20160 0.91427 0.86291 1.20851 1.17303 0.82617 0.86800 0.75926 1.90836 1.54961 1.47586 1.52223 1.46193 1.07312 1.10384 1.73166 1.21104 0.93420 0.82252 1.01085 1.21821 0.92554 0.99249 0.95262 1.21986 0.96743 0.94379 0.84955 1.86468 1.70476 1.63559 1.19329 1.23272 0.96763 0.98861 0.96679 1.23819 0.96161 0.94729 0.84531 0.86877 1.88034 1.31808 1.80117 1.30653 1.21444 0.84529 0.98394 0.93008 1.19856 1.00367 0.94424 0.96122 1.21321 0.98265 0.99793 0.93487 1.21480 1.00327 0.96735 0.96612 1.21534 0.98273 0.94068 1.00478 1.21453 0.99375 1.00778 0.93719 1.21307 0.99032 0.96058 0.96916 1.23483 0.98135 0.96263 1.00072 0.87636 0.85492 0.89146 0.78105 0.85163 0.76766 1.22948 1.22583 0.84156 0.74873 0.92381 0.92778 0.91705 0.90927 0.75108 0.89815 0.87594 0.91669 0.90636 0.84613 0.84258 0.84434 0.84614 0.85348 0.90262 0.90476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.46 9.50 127.77 1.21 0.75 16 2 N -0.42 1.21 3.16 -534.31 -1.69 -0.48 16 3 C 0.07 -0.19 11.27 83.48 0.94 0.75 16 4 C -0.22 -0.35 5.41 -20.12 -0.11 -0.46 16 5 C -0.03 -0.02 3.00 71.24 0.21 0.19 16 6 O -0.55 -1.57 12.87 -148.98 -1.92 -3.49 16 7 Si 0.74 2.32 30.64 68.60 2.10 4.42 16 8 C -0.12 -0.73 9.14 22.57 0.21 -0.53 16 9 C -0.08 -0.39 6.88 40.35 0.28 -0.11 16 10 C 0.58 5.14 7.77 86.45 0.67 5.81 16 11 O -0.58 -10.55 16.90 -4.29 -0.07 -10.62 16 12 N -0.71 -0.63 4.96 -467.08 -2.32 -2.95 16 13 C 0.14 0.42 4.87 86.38 0.42 0.84 16 14 C -0.09 0.36 0.68 -51.66 -0.03 0.33 16 15 C 0.10 -0.80 6.17 71.98 0.44 -0.35 16 16 O -0.59 2.13 12.92 -148.98 -1.92 0.21 16 17 C -0.12 0.73 6.87 31.12 0.21 0.95 16 18 C 0.07 -0.29 3.95 31.12 0.12 -0.16 16 19 H 0.11 -1.05 7.35 -2.39 -0.02 -1.06 16 20 O -0.39 -0.57 10.34 -148.98 -1.54 -2.11 16 21 C 0.10 -0.13 5.91 71.24 0.42 0.29 16 22 C -0.11 -0.26 5.51 -19.87 -0.11 -0.37 16 23 C -0.11 -0.17 9.70 22.27 0.22 0.05 16 24 C -0.13 -0.17 10.05 22.27 0.22 0.06 16 25 C -0.13 -0.20 10.05 22.27 0.22 0.02 16 26 C -0.14 -0.31 10.05 22.27 0.22 -0.09 16 27 C -0.12 -0.34 9.70 22.27 0.22 -0.13 16 28 C -0.14 0.23 7.06 31.12 0.22 0.45 16 29 H 0.11 -1.69 8.08 -2.39 -0.02 -1.71 16 30 H 0.13 -2.13 8.12 -2.39 -0.02 -2.15 16 31 H 0.09 -1.12 6.01 -2.39 -0.01 -1.13 16 32 H 0.20 -1.75 8.06 -2.91 -0.02 -1.77 16 33 H 0.13 -0.31 7.96 -2.38 -0.02 -0.33 16 34 H 0.38 -0.48 8.70 -74.06 -0.64 -1.12 16 35 H -0.30 -3.01 7.11 99.48 0.71 -2.31 16 36 H -0.30 -2.79 7.11 99.48 0.71 -2.08 16 37 H 0.14 1.08 6.38 -2.91 -0.02 1.06 16 38 H 0.41 -2.57 3.72 -92.71 -0.35 -2.91 16 39 H 0.06 0.47 7.60 -2.38 -0.02 0.45 16 40 H 0.05 0.37 8.06 -2.39 -0.02 0.35 16 41 H 0.06 -0.80 7.55 -2.39 -0.02 -0.82 16 42 H 0.07 -0.85 7.31 -2.39 -0.02 -0.87 16 43 H 0.40 -4.66 9.12 -74.06 -0.68 -5.34 16 44 H 0.08 -0.17 8.10 -2.39 -0.02 -0.19 16 45 H 0.11 -1.30 8.10 -2.38 -0.02 -1.32 16 46 H 0.07 -0.19 8.09 -2.38 -0.02 -0.21 16 47 H 0.08 -0.39 8.08 -2.39 -0.02 -0.41 16 48 H 0.14 -0.30 8.06 -2.91 -0.02 -0.33 16 49 H 0.14 -0.39 8.06 -2.91 -0.02 -0.41 16 50 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 51 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 52 H 0.13 0.08 8.06 -2.91 -0.02 0.06 16 53 H 0.08 -0.13 8.10 -2.39 -0.02 -0.15 16 54 H 0.08 0.19 8.04 -2.39 -0.02 0.17 16 Total: 0.00 -29.95 442.35 -1.83 -31.79 By element: Atomic # 1 Polarization: -24.36 SS G_CDS: -0.69 Total: -25.04 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.22 Total: 8.28 kcal Atomic # 7 Polarization: 0.58 SS G_CDS: -4.01 Total: -3.43 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -5.46 Total: -16.01 kcal Atomic # 14 Polarization: 2.32 SS G_CDS: 2.10 Total: 4.42 kcal Total: -29.95 -1.83 -31.79 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15111636_10803934.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.623 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds