Wall clock time and date at job start Sun Mar 7 2021 03:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86292 * 109.47363 * 2 1 4 4 C 1.50706 * 109.46715 * 119.99989 * 2 1 3 5 5 C 1.38192 * 119.84231 * 254.97233 * 4 2 1 6 6 C 1.38306 * 120.14459 * 179.72030 * 5 4 2 7 7 F 1.35106 * 120.08023 * 180.30226 * 6 5 4 8 8 C 1.39803 * 119.83258 * 0.56123 * 6 5 4 9 9 C 1.47698 * 120.15552 * 179.74258 * 8 6 5 10 10 O 1.21577 * 119.99762 * 359.72116 * 9 8 6 11 11 N 1.34770 * 119.99968 * 179.71990 * 9 8 6 12 12 C 1.46503 * 119.99850 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47189 * 183.76784 * 12 11 9 14 14 C 1.53000 * 112.84942 * 66.60728 * 13 12 11 15 15 O 1.42902 * 109.47333 * 53.88660 * 14 13 12 16 16 C 1.53779 * 113.69216 * 197.87648 * 13 12 11 17 17 C 1.53782 * 87.08098 * 139.99197 * 16 13 12 18 18 H 1.09000 * 113.69012 * 89.12957 * 17 16 13 19 19 O 1.42897 * 113.61056 * 220.01969 * 17 16 13 20 20 C 1.42905 * 113.99726 * 247.49178 * 19 17 16 21 21 C 1.50708 * 109.46669 * 180.02562 * 20 19 17 22 22 C 1.38234 * 120.00214 * 269.72554 * 21 20 19 23 23 C 1.38228 * 120.00039 * 179.74531 * 22 21 20 24 24 C 1.38237 * 119.99791 * 0.55913 * 23 22 21 25 25 C 1.38235 * 120.00380 * 359.69647 * 24 23 22 26 26 C 1.38237 * 119.99564 * 90.00984 * 21 20 19 27 27 C 1.53777 * 87.08060 * 334.56717 * 17 16 13 28 28 C 1.39649 * 119.68841 * 359.46622 * 8 6 5 29 29 C 1.38072 * 119.85561 * 0.25294 * 28 8 6 30 30 F 1.35096 * 119.91667 * 180.02562 * 29 28 8 31 31 H 0.96702 * 114.00083 * 300.00047 * 1 2 3 32 32 H 1.08992 * 109.47144 * 239.99598 * 2 1 3 33 33 H 1.48497 * 110.00432 * 178.67886 * 3 2 1 34 34 H 1.48500 * 110.00221 * 299.99960 * 3 2 1 35 35 H 1.08005 * 119.92297 * 0.02562 * 5 4 2 36 36 H 0.96996 * 120.00261 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47169 * 63.77048 * 12 11 9 38 38 H 1.09001 * 109.47061 * 303.76380 * 12 11 9 39 39 H 1.09002 * 109.47094 * 173.89086 * 14 13 12 40 40 H 1.09005 * 109.46952 * 293.88891 * 14 13 12 41 41 H 0.96699 * 113.99780 * 179.97438 * 15 14 13 42 42 H 1.08998 * 113.61061 * 25.44169 * 16 13 12 43 43 H 1.09001 * 113.61081 * 254.54182 * 16 13 12 44 44 H 1.08993 * 109.47569 * 300.00526 * 20 19 17 45 45 H 1.08999 * 109.46747 * 60.00726 * 20 19 17 46 46 H 1.07998 * 119.99732 * 0.02562 * 22 21 20 47 47 H 1.08000 * 120.00230 * 180.27650 * 23 22 21 48 48 H 1.08008 * 119.99970 * 179.72466 * 24 23 22 49 49 H 1.07999 * 120.00359 * 179.97438 * 25 24 23 50 50 H 1.08000 * 120.00137 * 359.97438 * 26 21 20 51 51 H 1.09003 * 113.61514 * 139.98132 * 27 17 16 52 52 H 1.09005 * 113.61772 * 270.88144 * 27 17 16 53 53 H 1.08005 * 120.07605 * 180.27344 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.4534 0.0197 2.2812 6 6 2.9108 -0.6254 3.4158 7 9 3.4155 0.0901 4.4447 8 6 2.8546 -2.0202 3.4931 9 6 3.3463 -2.7169 4.6991 10 8 3.8060 -2.0776 5.6254 11 7 3.2854 -4.0612 4.7726 12 6 3.7737 -4.7522 5.9685 13 6 3.6780 -6.2647 5.7585 14 6 4.6271 -6.7749 4.6723 15 8 5.9589 -6.3466 4.9638 16 6 3.7430 -7.0752 7.0637 17 6 2.6547 -7.9808 6.4633 18 1 3.0498 -8.8140 5.8822 19 8 1.6611 -8.3847 7.4076 20 6 1.6803 -9.7812 7.7101 21 6 0.5967 -10.0935 8.7098 22 6 0.8686 -10.0377 10.0640 23 6 -0.1268 -10.3191 10.9809 24 6 -1.3910 -10.6675 10.5436 25 6 -1.6616 -10.7284 9.1894 26 6 -0.6677 -10.4415 8.2724 27 6 2.2355 -6.7753 5.6056 28 6 2.3260 -2.7513 2.4271 29 6 1.8677 -2.0936 1.3029 30 9 1.3556 -2.7996 0.2712 31 1 -0.3933 0.4417 0.7651 32 1 1.7923 -0.5139 -0.8899 33 1 3.5346 1.7702 0.0322 34 1 1.5616 2.4678 -1.2085 35 1 2.4999 1.0970 2.2180 36 1 2.9191 -4.5712 4.0334 37 1 3.1665 -4.4656 6.8272 38 1 4.8124 -4.4756 6.1494 39 1 4.5938 -7.8641 4.6430 40 1 4.3206 -6.3760 3.7053 41 1 6.6156 -6.6352 4.3153 42 1 3.4128 -6.5181 7.9404 43 1 4.6965 -7.5809 7.2166 44 1 1.5087 -10.3529 6.7981 45 1 2.6501 -10.0487 8.1295 46 1 1.8575 -9.7699 10.4055 47 1 0.0845 -10.2711 12.0390 48 1 -2.1676 -10.8916 11.2600 49 1 -2.6492 -11.0010 8.8477 50 1 -0.8790 -10.4892 7.2143 51 1 1.9719 -7.0389 4.5812 52 1 1.4930 -6.1363 6.0836 53 1 2.2755 -3.8287 2.4820 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15111636_12360598.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:05:40 Heat of formation + Delta-G solvation = -160.624107 kcal Electronic energy + Delta-G solvation = -39740.646405 eV Core-core repulsion = 34181.236655 eV Total energy + Delta-G solvation = -5559.409750 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 420.163 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -50.12554 -50.10235 -41.72528 -40.95764 -40.18428 -39.78818 -38.10890 -37.64295 -36.71447 -35.56371 -33.42414 -32.72079 -31.82410 -31.38931 -29.67927 -28.00157 -27.12041 -26.90231 -26.59147 -24.40912 -23.86960 -23.51526 -22.85500 -22.28136 -21.87491 -20.08758 -19.36155 -18.85402 -18.66178 -18.37527 -18.04424 -17.89722 -17.60231 -17.38473 -17.01331 -16.78677 -16.70004 -16.52369 -16.48224 -16.31981 -16.07952 -15.87719 -15.83931 -15.65148 -15.53476 -15.25861 -15.10193 -15.01958 -14.57052 -14.29878 -14.20346 -14.07633 -13.99668 -13.86155 -13.82359 -13.38734 -13.37254 -13.15602 -13.01857 -12.85643 -12.72182 -12.35960 -12.18327 -12.13848 -11.96680 -11.74914 -11.70712 -11.42602 -11.26219 -10.83693 -10.62945 -10.60519 -10.42533 -10.24789 -9.85986 -9.83725 -9.79060 -5.05351 -0.82694 -0.32418 0.30898 0.46279 1.15690 1.37980 1.61695 1.81099 1.93109 2.22836 2.56633 2.77517 2.81917 3.03179 3.08285 3.12170 3.27454 3.37091 3.53825 3.54377 3.55922 3.67544 3.79142 3.83869 3.89545 3.93189 4.07046 4.11527 4.12399 4.17348 4.25875 4.30329 4.32180 4.33734 4.41675 4.51175 4.52081 4.55593 4.60664 4.63265 4.67378 4.69953 4.73931 4.74947 4.78251 4.86519 4.98260 5.05151 5.11874 5.14171 5.15478 5.24441 5.36651 5.51809 5.58783 5.62246 6.06173 6.26913 6.28579 6.67641 6.87928 6.96451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.546 6.546 2 C -0.077 4.077 3 Si 0.776 3.224 4 C -0.097 4.097 5 C -0.119 4.119 6 C 0.140 3.860 7 F -0.123 7.123 8 C -0.148 4.148 9 C 0.555 3.445 10 O -0.563 6.563 11 N -0.700 5.700 12 C 0.148 3.852 13 C -0.087 4.087 14 C 0.096 3.904 15 O -0.590 6.590 16 C -0.139 4.139 17 C 0.063 3.937 18 H 0.110 0.890 19 O -0.385 6.385 20 C 0.102 3.898 21 C -0.107 4.107 22 C -0.115 4.115 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.133 4.133 26 C -0.111 4.111 27 C -0.119 4.119 28 C -0.078 4.078 29 C 0.102 3.898 30 F -0.128 7.128 31 H 0.399 0.601 32 H 0.115 0.885 33 H -0.280 1.280 34 H -0.289 1.289 35 H 0.182 0.818 36 H 0.413 0.587 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.398 0.602 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.129 0.871 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.135 0.865 51 H 0.103 0.897 52 H 0.089 0.911 53 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.678 -4.599 -3.298 5.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.186 4.186 3 Si 0.680 3.320 4 C -0.098 4.098 5 C -0.137 4.137 6 C 0.119 3.881 7 F -0.101 7.101 8 C -0.152 4.152 9 C 0.342 3.658 10 O -0.443 6.443 11 N -0.352 5.352 12 C 0.024 3.976 13 C -0.088 4.088 14 C 0.019 3.981 15 O -0.399 6.399 16 C -0.177 4.177 17 C 0.006 3.994 18 H 0.128 0.872 19 O -0.305 6.305 20 C 0.026 3.974 21 C -0.107 4.107 22 C -0.133 4.133 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.129 4.129 27 C -0.156 4.156 28 C -0.097 4.097 29 C 0.082 3.918 30 F -0.107 7.107 31 H 0.250 0.750 32 H 0.133 0.867 33 H -0.207 1.207 34 H -0.217 1.217 35 H 0.198 0.802 36 H 0.251 0.749 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.248 0.752 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.147 0.853 47 H 0.154 0.846 48 H 0.156 0.844 49 H 0.157 0.843 50 H 0.153 0.847 51 H 0.121 0.879 52 H 0.107 0.893 53 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.211 -3.524 -2.992 4.779 hybrid contribution 0.511 -1.166 -0.715 1.460 sum -0.700 -4.690 -3.707 6.019 Atomic orbital electron populations 1.86553 1.16166 1.82128 1.50581 1.25254 0.86049 1.11383 0.95911 0.93787 0.78331 0.74129 0.85749 1.20581 0.98979 0.92667 0.97621 1.20998 0.99956 1.02069 0.90698 1.17818 0.96200 0.88350 0.85687 1.91614 1.84057 1.77473 1.56950 1.19817 1.06398 0.92566 0.96437 1.18103 0.78594 0.82935 0.86136 1.90876 1.46667 1.66858 1.39879 1.45629 1.63136 1.05327 1.21125 1.21122 0.99400 0.90412 0.86645 1.21802 0.96593 0.92741 0.97669 1.21994 0.81837 0.98586 0.95732 1.86456 1.18278 1.79973 1.55146 1.23471 0.99762 0.97872 0.96642 1.23826 0.88762 0.96245 0.90588 0.87211 1.88031 1.55686 1.24169 1.62609 1.21439 0.96524 0.82518 0.96911 1.19849 0.95424 1.01193 0.94272 1.21304 1.00144 0.99016 0.92816 1.21454 0.93528 0.99731 1.00565 1.21537 0.97390 0.98922 0.96478 1.21477 1.00109 1.00108 0.93440 1.21319 0.92454 0.98504 1.00640 1.23289 0.94325 0.96363 1.01629 1.21303 0.96145 1.02257 0.90022 1.17359 0.99290 0.89154 0.85994 1.91567 1.84422 1.78216 1.56466 0.75020 0.86724 1.20669 1.21653 0.80153 0.74856 0.92324 0.92109 0.91315 0.91601 0.75234 0.90174 0.90474 0.90839 0.91671 0.85306 0.84551 0.84394 0.84278 0.84731 0.87886 0.89274 0.80415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.32 12.88 -148.98 -1.92 -0.60 16 2 C -0.08 0.25 2.44 71.24 0.17 0.42 16 3 Si 0.78 -3.78 29.90 68.60 2.05 -1.73 16 4 C -0.10 0.28 5.27 -19.77 -0.10 0.17 16 5 C -0.12 0.38 8.62 22.27 0.19 0.57 16 6 C 0.14 0.38 7.28 22.66 0.17 0.54 16 7 F -0.12 -1.07 15.55 44.97 0.70 -0.37 16 8 C -0.15 -0.22 5.88 -20.06 -0.12 -0.34 16 9 C 0.56 3.32 7.77 86.74 0.67 3.99 16 10 O -0.56 -8.86 15.34 -3.96 -0.06 -8.92 16 11 N -0.70 0.59 5.27 -466.10 -2.46 -1.87 16 12 C 0.15 0.25 4.88 86.38 0.42 0.67 16 13 C -0.09 0.35 0.68 -51.65 -0.04 0.32 16 14 C 0.10 -0.69 6.19 71.98 0.45 -0.24 16 15 O -0.59 1.61 12.90 -148.98 -1.92 -0.31 16 16 C -0.14 0.22 7.05 31.12 0.22 0.44 16 17 C 0.06 -0.24 3.96 31.12 0.12 -0.12 16 18 H 0.11 -0.88 7.34 -2.39 -0.02 -0.90 16 19 O -0.39 -0.70 10.34 -148.98 -1.54 -2.24 16 20 C 0.10 -0.08 5.90 71.24 0.42 0.34 16 21 C -0.11 -0.29 5.51 -19.86 -0.11 -0.40 16 22 C -0.11 -0.35 9.70 22.27 0.22 -0.13 16 23 C -0.13 -0.31 10.05 22.27 0.22 -0.08 16 24 C -0.13 -0.21 10.05 22.27 0.22 0.02 16 25 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 26 C -0.11 -0.22 9.70 22.27 0.22 0.00 16 27 C -0.12 0.69 6.74 31.12 0.21 0.90 16 28 C -0.08 0.31 9.51 22.57 0.21 0.53 16 29 C 0.10 -0.18 7.23 22.33 0.16 -0.02 16 30 F -0.13 -0.12 16.73 44.97 0.75 0.64 16 31 H 0.40 -4.45 8.70 -74.06 -0.64 -5.09 16 32 H 0.12 -0.21 7.89 -2.39 -0.02 -0.23 16 33 H -0.28 -0.06 7.11 99.48 0.71 0.65 16 34 H -0.29 -0.72 7.11 99.48 0.71 -0.02 16 35 H 0.18 -1.56 5.10 -2.91 -0.01 -1.58 16 36 H 0.41 -3.25 5.96 -92.71 -0.55 -3.80 16 37 H 0.06 0.27 8.05 -2.39 -0.02 0.25 16 38 H 0.06 0.44 7.58 -2.39 -0.02 0.42 16 39 H 0.07 -0.70 7.31 -2.39 -0.02 -0.72 16 40 H 0.07 -0.70 7.81 -2.38 -0.02 -0.72 16 41 H 0.40 -4.15 9.12 -74.06 -0.68 -4.82 16 42 H 0.08 0.15 8.03 -2.39 -0.02 0.13 16 43 H 0.08 -0.10 8.10 -2.39 -0.02 -0.11 16 44 H 0.07 -0.31 8.08 -2.39 -0.02 -0.33 16 45 H 0.07 -0.16 8.08 -2.39 -0.02 -0.18 16 46 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 47 H 0.14 -0.18 8.06 -2.91 -0.02 -0.20 16 48 H 0.14 -0.31 8.06 -2.91 -0.02 -0.33 16 49 H 0.14 -0.35 8.06 -2.91 -0.02 -0.37 16 50 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 51 H 0.10 -1.11 8.10 -2.39 -0.02 -1.13 16 52 H 0.09 -0.23 8.10 -2.38 -0.02 -0.25 16 53 H 0.18 -1.91 6.41 -2.91 -0.02 -1.93 16 Total: 0.00 -28.19 447.63 -1.07 -29.27 By element: Atomic # 1 Polarization: -20.62 SS G_CDS: -0.83 Total: -21.46 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 4.16 Total: 7.61 kcal Atomic # 7 Polarization: 0.59 SS G_CDS: -2.46 Total: -1.87 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -5.44 Total: -12.08 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 1.45 Total: 0.27 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.05 Total: -1.73 kcal Total: -28.19 -1.07 -29.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15111636_12360598.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.357 kcal (2) G-P(sol) polarization free energy of solvation -28.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds