Wall clock time and date at job start Sun Mar 7 2021 03:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86308 * 109.46897 * 2 1 4 4 C 1.50692 * 109.47594 * 119.99814 * 2 1 3 5 5 C 1.34179 * 125.43726 * 65.31106 * 4 2 1 6 6 C 1.47020 * 105.95673 * 180.14616 * 5 4 2 7 7 C 1.47379 * 127.19642 * 179.82927 * 6 5 4 8 8 O 1.21617 * 119.99467 * 359.71815 * 7 6 5 9 9 N 1.34778 * 120.00203 * 179.70730 * 7 6 5 10 10 C 1.46494 * 119.99806 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47165 * 184.92431 * 10 9 7 12 12 C 1.52998 * 112.84973 * 63.63977 * 11 10 9 13 13 O 1.42904 * 109.47191 * 54.13793 * 12 11 10 14 14 C 1.53779 * 113.69270 * 194.91252 * 11 10 9 15 15 C 1.53790 * 87.08181 * 139.98812 * 14 11 10 16 16 H 1.08999 * 113.60862 * 89.11452 * 15 14 11 17 17 O 1.42896 * 113.69068 * 220.00916 * 15 14 11 18 18 C 1.42904 * 113.99782 * 247.53738 * 17 15 14 19 19 C 1.50704 * 109.46850 * 180.02562 * 18 17 15 20 20 C 1.38237 * 119.99597 * 269.72116 * 19 18 17 21 21 C 1.38232 * 119.99745 * 179.76840 * 20 19 18 22 22 C 1.38232 * 119.99870 * 0.50696 * 21 20 19 23 23 C 1.38226 * 120.00332 * 359.74919 * 22 21 20 24 24 C 1.38232 * 120.00154 * 89.99653 * 19 18 17 25 25 C 1.53779 * 87.08056 * 334.56919 * 15 14 11 26 26 C 1.36420 * 105.61190 * 359.57413 * 6 5 4 27 27 O 1.33644 * 108.39659 * 0.25948 * 26 6 5 28 28 H 0.96698 * 113.99893 * 299.99534 * 1 2 3 29 29 H 1.09000 * 109.47262 * 240.00492 * 2 1 3 30 30 H 1.48501 * 109.99890 * 300.00148 * 3 2 1 31 31 H 1.48493 * 109.99956 * 61.31788 * 3 2 1 32 32 H 1.07997 * 127.02417 * 359.97438 * 5 4 2 33 33 H 0.97001 * 120.00003 * 0.02562 * 9 7 6 34 34 H 1.08996 * 109.47683 * 64.92184 * 10 9 7 35 35 H 1.09003 * 109.47383 * 304.91587 * 10 9 7 36 36 H 1.08998 * 109.47720 * 294.13470 * 12 11 10 37 37 H 1.09010 * 109.47183 * 174.13406 * 12 11 10 38 38 H 0.96698 * 114.00182 * 179.97438 * 13 12 11 39 39 H 1.08996 * 113.61196 * 254.53332 * 14 11 10 40 40 H 1.09004 * 113.61450 * 25.44226 * 14 11 10 41 41 H 1.09002 * 109.46824 * 299.99996 * 18 17 15 42 42 H 1.08993 * 109.47495 * 60.00020 * 18 17 15 43 43 H 1.08007 * 119.99882 * 0.02562 * 20 19 18 44 44 H 1.07999 * 120.00172 * 180.23382 * 21 20 19 45 45 H 1.08007 * 119.99617 * 179.72415 * 22 21 20 46 46 H 1.08001 * 120.00286 * 179.97438 * 23 22 21 47 47 H 1.07996 * 120.00081 * 0.02562 * 24 19 18 48 48 H 1.09004 * 113.61286 * 270.88272 * 25 15 14 49 49 H 1.09001 * 113.69388 * 139.99345 * 25 15 14 50 50 H 1.08001 * 125.79968 * 180.25895 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 1.2304 5 6 1.7603 -2.0134 1.5008 6 6 2.4124 -2.2460 2.7978 7 6 2.5000 -3.5189 3.5354 8 8 1.9927 -4.5241 3.0758 9 7 3.1424 -3.5690 4.7192 10 6 3.2299 -4.8345 5.4520 11 6 3.8960 -4.5934 6.8082 12 6 3.0798 -3.6705 7.7153 13 8 1.7525 -4.1836 7.8465 14 6 4.3664 -5.8820 7.5033 15 6 5.6215 -5.1013 7.9279 16 1 5.5117 -4.5827 8.8803 17 8 6.8270 -5.8645 7.8473 18 6 7.4206 -6.1489 9.1157 19 6 8.6788 -6.9531 8.9123 20 6 8.6212 -8.3342 8.8953 21 6 9.7745 -9.0718 8.7040 22 6 10.9870 -8.4285 8.5402 23 6 11.0455 -7.0477 8.5625 24 6 9.8914 -6.3099 8.7485 25 6 5.3794 -4.2011 6.7049 26 6 2.9245 -1.0385 3.1731 27 8 2.6269 -0.1420 2.2277 28 1 -0.3933 0.4416 0.7651 29 1 1.7924 -0.5137 -0.8900 30 1 1.5614 2.4680 -1.2085 31 1 1.5878 2.4586 1.2242 32 1 1.2460 -2.7419 0.8917 33 1 3.5468 -2.7672 5.0859 34 1 3.8223 -5.5468 4.8778 35 1 2.2281 -5.2355 5.6056 36 1 3.0421 -2.6724 7.2789 37 1 3.5485 -3.6197 8.6982 38 1 1.1776 -3.6477 8.4098 39 1 3.7353 -6.1822 8.3397 40 1 4.5736 -6.6998 6.8131 41 1 7.6649 -5.2142 9.6204 42 1 6.7195 -6.7186 9.7255 43 1 7.6743 -8.8368 9.0273 44 1 9.7290 -10.1506 8.6869 45 1 11.8888 -9.0049 8.3951 46 1 11.9929 -6.5451 8.4349 47 1 9.9371 -5.2310 8.7667 48 1 5.8635 -4.5594 5.7963 49 1 5.5659 -3.1442 6.8952 50 1 3.4766 -0.8408 4.0800 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15111636_13456056.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:07:55 Heat of formation + Delta-G solvation = -87.592978 kcal Electronic energy + Delta-G solvation = -32896.557309 eV Core-core repulsion = 28244.303945 eV Total energy + Delta-G solvation = -4652.253364 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.165 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.72800 -41.51153 -40.36885 -40.01766 -38.15972 -38.08603 -36.69046 -35.46292 -33.96679 -32.75761 -31.93488 -31.81718 -29.47311 -27.53237 -27.00813 -26.68848 -26.50955 -24.64867 -23.50879 -22.81053 -22.33153 -22.27287 -21.04791 -19.73200 -19.24009 -18.47380 -18.04029 -17.87527 -17.68637 -17.54155 -17.32185 -16.84824 -16.62046 -16.52811 -16.39714 -16.07665 -15.89361 -15.70732 -15.60455 -15.15305 -15.06089 -14.65243 -14.29294 -14.23380 -14.04588 -14.02117 -13.95945 -13.85231 -13.59215 -13.37730 -13.34783 -12.95480 -12.83554 -12.70344 -12.13565 -12.12013 -11.95992 -11.73992 -11.69201 -11.40161 -11.26423 -10.99263 -10.82682 -10.75522 -10.41111 -10.22672 -9.85301 -9.80358 -9.78376 -4.90838 0.25533 0.31622 0.46945 0.80624 1.18121 1.53177 1.75451 1.95602 2.01120 2.23817 2.57806 3.06300 3.10541 3.21439 3.38695 3.51494 3.55363 3.57038 3.69405 3.85583 3.90752 3.94066 3.97956 4.08790 4.12869 4.16088 4.26474 4.34012 4.34921 4.42598 4.44327 4.50162 4.52722 4.57330 4.61892 4.64536 4.74857 4.77099 4.79693 4.87065 4.89437 5.01399 5.05870 5.10909 5.12557 5.15596 5.19718 5.31490 5.52458 5.59434 5.62964 5.81953 6.06877 6.30085 6.34555 6.44535 6.90179 7.12911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.048 4.048 3 Si 0.794 3.206 4 C -0.049 4.049 5 C -0.152 4.152 6 C -0.269 4.269 7 C 0.584 3.416 8 O -0.591 6.591 9 N -0.701 5.701 10 C 0.149 3.851 11 C -0.086 4.086 12 C 0.097 3.903 13 O -0.592 6.592 14 C -0.142 4.142 15 C 0.064 3.936 16 H 0.111 0.889 17 O -0.386 6.386 18 C 0.102 3.898 19 C -0.107 4.107 20 C -0.116 4.116 21 C -0.135 4.135 22 C -0.126 4.126 23 C -0.133 4.133 24 C -0.110 4.110 25 C -0.115 4.115 26 C 0.069 3.931 27 O -0.163 6.163 28 H 0.391 0.609 29 H 0.147 0.853 30 H -0.288 1.288 31 H -0.284 1.284 32 H 0.142 0.858 33 H 0.415 0.585 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.397 0.603 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.136 0.864 48 H 0.087 0.913 49 H 0.107 0.893 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.811 7.306 6.681 11.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.156 4.156 3 Si 0.697 3.303 4 C -0.097 4.097 5 C -0.172 4.172 6 C -0.274 4.274 7 C 0.373 3.627 8 O -0.473 6.473 9 N -0.353 5.353 10 C 0.026 3.974 11 C -0.087 4.087 12 C 0.019 3.981 13 O -0.401 6.401 14 C -0.181 4.181 15 C 0.006 3.994 16 H 0.129 0.871 17 O -0.305 6.305 18 C 0.026 3.974 19 C -0.108 4.108 20 C -0.134 4.134 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.151 4.151 24 C -0.128 4.128 25 C -0.153 4.153 26 C -0.002 4.002 27 O -0.058 6.058 28 H 0.241 0.759 29 H 0.165 0.835 30 H -0.215 1.215 31 H -0.210 1.210 32 H 0.160 0.840 33 H 0.252 0.748 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.247 0.753 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.082 0.918 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.154 0.846 48 H 0.105 0.895 49 H 0.126 0.874 50 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 5.713 6.883 5.262 10.378 hybrid contribution -1.588 -0.421 1.072 1.962 sum 4.125 6.462 6.334 9.945 Atomic orbital electron populations 1.86653 1.17590 1.80616 1.50028 1.24759 0.83465 1.13546 0.93783 0.93429 0.89792 0.70032 0.77085 1.22676 1.01460 0.92593 0.92972 1.22569 1.02364 0.96021 0.96277 1.21452 1.11564 0.94923 0.99419 1.17572 0.77313 0.87010 0.80801 1.90794 1.49245 1.37853 1.69390 1.45498 1.56395 1.13256 1.20126 1.21043 1.00395 0.85335 0.90673 1.21798 0.94774 0.98267 0.93842 1.22010 0.82551 0.95243 0.98293 1.86470 1.23542 1.55993 1.74074 1.23487 0.97138 0.96713 1.00747 1.23830 0.83109 0.92695 0.99735 0.87083 1.88032 1.39693 1.73605 1.29215 1.21440 0.91581 0.98580 0.85786 1.19855 0.94817 0.94015 1.02067 1.21305 0.99088 0.93754 0.99211 1.21448 0.92806 1.00961 1.00122 1.21532 0.98581 0.95204 0.99031 1.21480 0.99185 0.94450 0.99996 1.21323 0.92110 1.00806 0.98585 1.23273 0.91778 1.01453 0.98778 1.25296 0.96752 0.84873 0.93264 1.83719 1.56797 1.38922 1.26402 0.75939 0.83540 1.21531 1.20983 0.84019 0.74780 0.92887 0.92838 0.91174 0.91255 0.75269 0.90618 0.90467 0.90676 0.91783 0.85408 0.84634 0.84419 0.84216 0.84583 0.89451 0.87417 0.71986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.19 12.88 -148.98 -1.92 -3.11 16 2 C -0.05 0.06 2.97 71.23 0.21 0.27 16 3 Si 0.79 -2.86 32.09 68.60 2.20 -0.66 16 4 C -0.05 -0.04 6.18 24.76 0.15 0.11 16 5 C -0.15 -0.92 10.90 23.65 0.26 -0.66 16 6 C -0.27 -0.89 6.31 -18.99 -0.12 -1.01 16 7 C 0.58 4.66 7.81 86.65 0.68 5.34 16 8 O -0.59 -11.40 16.98 -4.08 -0.07 -11.47 16 9 N -0.70 0.34 5.29 -466.42 -2.47 -2.13 16 10 C 0.15 0.40 4.82 86.38 0.42 0.82 16 11 C -0.09 0.35 0.67 -51.65 -0.03 0.32 16 12 C 0.10 -0.74 6.14 71.98 0.44 -0.30 16 13 O -0.59 1.48 12.96 -148.98 -1.93 -0.45 16 14 C -0.14 0.17 7.06 31.12 0.22 0.39 16 15 C 0.06 -0.26 3.96 31.12 0.12 -0.14 16 16 H 0.11 -0.96 7.34 -2.39 -0.02 -0.98 16 17 O -0.39 -0.63 10.34 -148.98 -1.54 -2.18 16 18 C 0.10 -0.11 5.90 71.24 0.42 0.31 16 19 C -0.11 -0.27 5.51 -19.86 -0.11 -0.38 16 20 C -0.12 -0.36 9.70 22.27 0.22 -0.14 16 21 C -0.14 -0.31 10.05 22.27 0.22 -0.09 16 22 C -0.13 -0.20 10.05 22.27 0.22 0.03 16 23 C -0.13 -0.16 10.05 22.27 0.22 0.07 16 24 C -0.11 -0.17 9.70 22.27 0.22 0.04 16 25 C -0.12 0.75 6.87 31.12 0.21 0.96 16 26 C 0.07 -0.40 11.61 67.40 0.78 0.38 16 27 O -0.16 0.44 8.90 4.55 0.04 0.48 16 28 H 0.39 -1.46 8.70 -74.06 -0.64 -2.11 16 29 H 0.15 -0.52 7.96 -2.39 -0.02 -0.54 16 30 H -0.29 -0.83 7.11 99.48 0.71 -0.12 16 31 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 32 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.41 -3.87 6.81 -92.71 -0.63 -4.50 16 34 H 0.05 0.32 8.11 -2.39 -0.02 0.30 16 35 H 0.05 0.49 7.66 -2.39 -0.02 0.47 16 36 H 0.07 -0.85 7.62 -2.39 -0.02 -0.87 16 37 H 0.07 -0.76 7.31 -2.38 -0.02 -0.77 16 38 H 0.40 -4.13 9.12 -74.06 -0.68 -4.81 16 39 H 0.08 -0.05 8.10 -2.39 -0.02 -0.07 16 40 H 0.08 0.21 8.08 -2.38 -0.02 0.19 16 41 H 0.08 -0.36 8.09 -2.39 -0.02 -0.38 16 42 H 0.06 -0.16 8.08 -2.39 -0.02 -0.18 16 43 H 0.13 0.11 8.06 -2.91 -0.02 0.08 16 44 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 45 H 0.14 -0.32 8.06 -2.91 -0.02 -0.34 16 46 H 0.14 -0.41 8.06 -2.91 -0.02 -0.43 16 47 H 0.14 -0.30 8.06 -2.91 -0.02 -0.32 16 48 H 0.09 -0.25 8.10 -2.39 -0.02 -0.27 16 49 H 0.11 -1.33 8.10 -2.39 -0.02 -1.35 16 50 H 0.26 -4.66 7.47 -2.91 -0.02 -4.68 16 Total: 0.00 -31.49 424.92 -1.85 -33.35 By element: Atomic # 1 Polarization: -19.22 SS G_CDS: -0.93 Total: -20.15 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 4.76 Total: 6.31 kcal Atomic # 7 Polarization: 0.34 SS G_CDS: -2.47 Total: -2.13 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -5.42 Total: -16.72 kcal Atomic # 14 Polarization: -2.86 SS G_CDS: 2.20 Total: -0.66 kcal Total: -31.49 -1.85 -33.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15111636_13456056.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.247 kcal (2) G-P(sol) polarization free energy of solvation -31.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds