Wall clock time and date at job start Sun Mar 7 2021 03:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33813 * 122.45348 * 2 1 4 4 C 1.50706 * 124.52210 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.46754 * 329.72510 * 4 3 2 6 6 Si 1.86294 * 109.47198 * 209.72421 * 4 3 2 7 7 S 1.70616 * 110.95691 * 179.73404 * 3 2 1 8 8 C 1.75827 * 91.56237 * 0.24287 * 7 3 2 9 9 C 1.46582 * 125.45437 * 180.02562 * 8 7 3 10 10 O 1.21711 * 119.99651 * 179.97438 * 9 8 7 11 11 N 1.34769 * 120.00484 * 359.97438 * 9 8 7 12 12 C 1.46499 * 120.00314 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47311 * 177.32778 * 12 11 9 14 14 C 1.53001 * 112.84906 * 66.10001 * 13 12 11 15 15 O 1.42901 * 109.47012 * 63.93282 * 14 13 12 16 16 C 1.53777 * 113.61492 * 197.40728 * 13 12 11 17 17 C 1.53782 * 87.08209 * 139.98306 * 16 13 12 18 18 H 1.08997 * 113.69055 * 89.12461 * 17 16 13 19 19 O 1.42895 * 113.61289 * 220.02178 * 17 16 13 20 20 C 1.42900 * 114.00121 * 247.49339 * 19 17 16 21 21 C 1.50703 * 109.47466 * 179.97438 * 20 19 17 22 22 C 1.38227 * 120.00017 * 269.72688 * 21 20 19 23 23 C 1.38240 * 119.99866 * 179.76628 * 22 21 20 24 24 C 1.38235 * 119.99777 * 0.48170 * 23 22 21 25 25 C 1.38236 * 120.00013 * 359.79982 * 24 23 22 26 26 C 1.38233 * 120.00080 * 359.94566 * 25 24 23 27 27 C 1.53779 * 87.07921 * 334.56686 * 17 16 13 28 28 C 1.36640 * 109.08440 * 0.02562 * 8 7 3 29 29 H 1.09007 * 109.47171 * 90.00063 * 1 2 3 30 30 H 1.08995 * 109.47530 * 209.99657 * 1 2 3 31 31 H 1.08999 * 109.46846 * 330.00275 * 1 2 3 32 32 H 1.09001 * 109.46837 * 89.72110 * 4 3 2 33 33 H 0.96703 * 113.99553 * 180.02562 * 5 4 3 34 34 H 1.48502 * 109.99939 * 298.67809 * 6 4 3 35 35 H 1.48502 * 110.00246 * 59.99844 * 6 4 3 36 36 H 0.97003 * 120.00343 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.46825 * 297.32708 * 12 11 9 38 38 H 1.09002 * 109.47266 * 57.32862 * 12 11 9 39 39 H 1.09000 * 109.47182 * 183.92800 * 14 13 12 40 40 H 1.09001 * 109.47105 * 303.93388 * 14 13 12 41 41 H 0.96700 * 114.00236 * 179.97438 * 15 14 13 42 42 H 1.08998 * 113.61768 * 254.52926 * 16 13 12 43 43 H 1.09004 * 113.61654 * 25.43382 * 16 13 12 44 44 H 1.09006 * 109.47239 * 300.00282 * 20 19 17 45 45 H 1.08999 * 109.46893 * 59.99991 * 20 19 17 46 46 H 1.08003 * 120.00331 * 359.97438 * 22 21 20 47 47 H 1.08000 * 119.99919 * 180.25227 * 23 22 21 48 48 H 1.08001 * 119.99762 * 179.76730 * 24 23 22 49 49 H 1.07996 * 119.99449 * 179.97438 * 25 24 23 50 50 H 1.07994 * 119.99962 * 180.02562 * 26 25 24 51 51 H 1.09004 * 113.61736 * 270.88306 * 27 17 16 52 52 H 1.08997 * 113.69169 * 139.98912 * 27 17 16 53 53 H 1.07999 * 123.35318 * 180.02562 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 6 1.6356 2.5162 -0.0006 5 8 0.3787 2.4992 -0.6803 6 14 2.7968 3.6841 -0.8713 7 16 3.8969 0.7891 0.0074 8 6 3.5936 -0.9428 0.0031 9 6 4.6231 -1.9863 0.0068 10 8 4.3001 -3.1597 0.0037 11 7 5.9272 -1.6464 0.0136 12 6 6.9560 -2.6894 0.0167 13 6 8.3403 -2.0404 -0.0428 14 6 8.6717 -1.2314 1.2128 15 8 8.7318 -2.1064 2.3410 16 6 9.4570 -3.0091 -0.4664 17 6 10.0359 -1.8532 -1.2994 18 1 10.7372 -1.2255 -0.7496 19 8 10.5374 -2.2612 -2.5737 20 6 11.9559 -2.1465 -2.7040 21 6 12.3726 -2.6016 -4.0789 22 6 12.6971 -3.9270 -4.2993 23 6 13.0747 -4.3454 -5.5616 24 6 13.1374 -3.4363 -6.6011 25 6 12.8184 -2.1097 -6.3792 26 6 12.4358 -1.6923 -5.1182 27 6 8.6092 -1.2818 -1.3532 28 6 2.2446 -1.1601 -0.0043 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.4885 2.8488 1.0270 33 1 -0.0588 3.3607 -0.7195 34 1 4.0971 3.7349 -0.1557 35 1 3.0056 3.2414 -2.2733 36 1 6.1847 -0.7112 0.0156 37 1 6.8709 -3.2808 0.9283 38 1 6.8204 -3.3362 -0.8501 39 1 9.6353 -0.7385 1.0836 40 1 7.8985 -0.4807 1.3760 41 1 8.9386 -1.6606 3.1739 42 1 10.1011 -3.3195 0.3563 43 1 9.1037 -3.8466 -1.0680 44 1 12.2511 -1.1071 -2.5598 45 1 12.4412 -2.7695 -1.9528 46 1 12.6525 -4.6364 -3.4861 47 1 13.3244 -5.3818 -5.7347 48 1 13.4360 -3.7625 -7.5864 49 1 12.8678 -1.3995 -7.1913 50 1 12.1862 -0.6560 -4.9450 51 1 8.0240 -1.6470 -2.1972 52 1 8.5673 -0.1978 -1.2466 53 1 1.8019 -2.1451 -0.0078 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15111636_6739946.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:10:31 Heat of formation + Delta-G solvation = -73.456500 kcal Electronic energy + Delta-G solvation = -34871.122959 eV Core-core repulsion = 30188.015659 eV Total energy + Delta-G solvation = -4683.107300 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.154 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.69123 -40.77262 -40.18577 -39.68359 -38.15492 -37.37379 -36.75624 -35.56721 -32.84704 -32.45604 -31.85271 -30.26469 -29.73575 -27.72846 -27.09064 -26.74174 -25.95780 -24.33924 -23.54433 -22.96447 -22.31243 -21.97013 -20.34369 -19.64140 -19.22782 -18.59676 -18.35568 -18.01310 -17.76903 -17.31216 -17.07201 -16.80368 -16.62499 -16.54601 -16.18992 -15.96331 -15.83292 -15.62851 -15.19634 -15.13327 -14.92019 -14.69361 -14.46301 -14.42414 -14.32935 -14.12774 -14.02622 -13.90337 -13.45198 -13.42223 -13.32104 -13.10128 -12.93184 -12.91062 -12.78359 -12.56989 -12.28722 -12.18759 -12.02134 -11.98000 -11.79818 -11.76216 -11.52674 -11.39281 -10.90951 -10.68255 -10.48890 -10.38213 -9.88821 -9.82085 -9.77894 -9.49883 -5.17053 -0.81042 0.14630 0.27888 0.43419 0.50455 1.01517 1.29288 1.55576 1.81032 1.91380 1.92566 2.52459 2.97351 3.03883 3.27928 3.32633 3.47265 3.58532 3.61010 3.71529 3.77832 3.85551 3.89243 4.01693 4.02495 4.07488 4.09599 4.22886 4.24210 4.30412 4.37164 4.40756 4.43357 4.45906 4.52283 4.53506 4.58826 4.60628 4.70267 4.71297 4.74686 4.78890 4.87645 4.91824 4.92633 5.02122 5.06578 5.07229 5.08997 5.16575 5.30828 5.42414 5.48915 5.55866 5.59334 6.03304 6.15309 6.23826 6.83166 6.85440 6.88206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.102 4.102 3 C -0.203 4.203 4 C -0.041 4.041 5 O -0.551 6.551 6 Si 0.755 3.245 7 S 0.210 5.790 8 C -0.284 4.284 9 C 0.589 3.411 10 O -0.570 6.570 11 N -0.708 5.708 12 C 0.146 3.854 13 C -0.090 4.090 14 C 0.097 3.903 15 O -0.587 6.587 16 C -0.135 4.135 17 C 0.067 3.933 18 H 0.113 0.887 19 O -0.386 6.386 20 C 0.101 3.899 21 C -0.108 4.108 22 C -0.114 4.114 23 C -0.135 4.135 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.112 4.112 27 C -0.122 4.122 28 C -0.055 4.055 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.406 0.594 34 H -0.255 1.255 35 H -0.294 1.294 36 H 0.407 0.593 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.399 0.601 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.129 0.871 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.140 0.860 50 H 0.134 0.866 51 H 0.084 0.916 52 H 0.099 0.901 53 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 11.226 2.398 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.322 4.322 4 C -0.153 4.153 5 O -0.362 6.362 6 Si 0.657 3.343 7 S 0.478 5.522 8 C -0.403 4.403 9 C 0.376 3.624 10 O -0.451 6.451 11 N -0.360 5.360 12 C 0.023 3.977 13 C -0.091 4.091 14 C 0.020 3.980 15 O -0.396 6.396 16 C -0.173 4.173 17 C 0.009 3.991 18 H 0.130 0.870 19 O -0.306 6.306 20 C 0.026 3.974 21 C -0.108 4.108 22 C -0.133 4.133 23 C -0.152 4.152 24 C -0.143 4.143 25 C -0.151 4.151 26 C -0.130 4.130 27 C -0.159 4.159 28 C -0.088 4.088 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.258 0.742 34 H -0.181 1.181 35 H -0.221 1.221 36 H 0.244 0.756 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.249 0.751 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.147 0.853 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.158 0.842 50 H 0.152 0.848 51 H 0.103 0.897 52 H 0.117 0.883 53 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.850 10.260 1.345 11.041 hybrid contribution -1.101 -1.073 0.613 1.655 sum 2.749 9.188 1.958 9.788 Atomic orbital electron populations 1.20502 0.87361 1.03201 1.02805 1.18882 0.99540 0.90116 1.02817 1.23745 0.98165 1.00282 1.10001 1.24186 0.93647 0.94383 1.03047 1.86531 1.32608 1.38444 1.78573 0.94070 0.77791 0.85446 0.76956 1.82671 1.03052 0.97185 1.69300 1.24575 0.97846 0.97830 1.20064 1.17155 0.82429 0.87057 0.75756 1.90832 1.82332 1.19937 1.51991 1.45681 1.04626 1.10937 1.74712 1.21195 0.85183 0.89560 1.01756 1.21825 0.93420 0.98570 0.95256 1.21950 1.01115 0.90687 0.84271 1.86445 1.94607 1.38979 1.19572 1.23412 0.96695 0.97620 0.99566 1.23789 0.94943 0.96014 0.84317 0.86984 1.88031 1.21584 1.86711 1.34262 1.21457 0.81535 1.01025 0.93422 1.19847 1.01024 0.94314 0.95633 1.21309 0.98598 0.95424 0.97920 1.21463 1.00013 1.00753 0.93012 1.21541 0.99086 0.93660 0.99980 1.21476 0.99452 0.96710 0.97505 1.21316 0.98702 1.00199 0.92766 1.23280 0.95770 1.01366 0.95503 1.20892 0.91265 1.00548 0.96135 0.91243 0.91875 0.89203 0.87140 0.74192 1.18064 1.22070 0.75645 0.91918 0.92215 0.90762 0.92387 0.75070 0.90014 0.90222 0.90809 0.91527 0.85271 0.84473 0.84312 0.84247 0.84810 0.89741 0.88290 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.19 8.70 71.23 0.62 0.43 16 2 C -0.10 -0.58 5.75 -21.05 -0.12 -0.70 16 3 C -0.20 -0.63 5.56 24.68 0.14 -0.50 16 4 C -0.04 0.16 2.75 71.24 0.20 0.36 16 5 O -0.55 2.56 9.83 -148.98 -1.46 1.09 16 6 Si 0.75 -3.98 31.31 68.60 2.15 -1.84 16 7 S 0.21 0.53 19.79 -56.49 -1.12 -0.59 16 8 C -0.28 -2.40 6.45 24.07 0.16 -2.25 16 9 C 0.59 6.83 7.78 86.42 0.67 7.50 16 10 O -0.57 -11.30 16.84 -4.38 -0.07 -11.37 16 11 N -0.71 -3.47 5.27 -467.17 -2.46 -5.93 16 12 C 0.15 0.79 4.93 86.38 0.43 1.22 16 13 C -0.09 0.07 0.62 -51.66 -0.03 0.04 16 14 C 0.10 -0.44 6.19 71.98 0.45 0.00 16 15 O -0.59 0.75 13.19 -148.98 -1.96 -1.22 16 16 C -0.13 -0.11 7.00 31.12 0.22 0.11 16 17 C 0.07 -0.09 3.96 31.12 0.12 0.03 16 18 H 0.11 -0.68 7.34 -2.39 -0.02 -0.70 16 19 O -0.39 -1.50 10.34 -148.98 -1.54 -3.04 16 20 C 0.10 0.07 5.90 71.24 0.42 0.49 16 21 C -0.11 -0.43 5.51 -19.87 -0.11 -0.54 16 22 C -0.11 -0.47 9.70 22.27 0.22 -0.25 16 23 C -0.13 -0.42 10.05 22.27 0.22 -0.20 16 24 C -0.12 -0.31 10.05 22.27 0.22 -0.09 16 25 C -0.13 -0.33 10.05 22.27 0.22 -0.11 16 26 C -0.11 -0.35 9.70 22.27 0.22 -0.14 16 27 C -0.12 0.24 6.85 31.12 0.21 0.46 16 28 C -0.05 -0.48 9.80 21.72 0.21 -0.26 16 29 H 0.07 0.22 8.14 -2.38 -0.02 0.20 16 30 H 0.06 0.09 8.13 -2.39 -0.02 0.07 16 31 H 0.09 0.03 6.43 -2.39 -0.02 0.01 16 32 H 0.11 -0.95 7.96 -2.39 -0.02 -0.97 16 33 H 0.41 -6.12 8.74 -74.06 -0.65 -6.77 16 34 H -0.26 0.66 7.11 99.48 0.71 1.36 16 35 H -0.29 -1.09 7.11 99.48 0.71 -0.39 16 36 H 0.41 -0.19 6.84 -92.71 -0.63 -0.82 16 37 H 0.06 0.59 7.87 -2.39 -0.02 0.58 16 38 H 0.06 0.51 8.05 -2.39 -0.02 0.49 16 39 H 0.07 -0.64 7.31 -2.39 -0.02 -0.65 16 40 H 0.06 -0.38 7.40 -2.39 -0.02 -0.40 16 41 H 0.40 -3.77 9.12 -74.06 -0.68 -4.45 16 42 H 0.08 0.06 8.05 -2.39 -0.02 0.04 16 43 H 0.08 0.33 8.04 -2.38 -0.02 0.31 16 44 H 0.07 -0.21 8.09 -2.38 -0.02 -0.23 16 45 H 0.07 -0.09 8.08 -2.39 -0.02 -0.11 16 46 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 47 H 0.14 -0.07 8.06 -2.91 -0.02 -0.10 16 48 H 0.14 -0.21 8.06 -2.91 -0.02 -0.24 16 49 H 0.14 -0.22 8.06 -2.91 -0.02 -0.25 16 50 H 0.13 -0.03 8.06 -2.91 -0.02 -0.06 16 51 H 0.08 0.16 8.10 -2.38 -0.02 0.14 16 52 H 0.10 -0.64 8.10 -2.39 -0.02 -0.66 16 53 H 0.15 1.37 8.06 -2.91 -0.02 1.34 16 Total: 0.00 -26.57 448.22 -2.76 -29.32 By element: Atomic # 1 Polarization: -11.07 SS G_CDS: -0.96 Total: -12.03 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.68 Total: 5.59 kcal Atomic # 7 Polarization: -3.47 SS G_CDS: -2.46 Total: -5.93 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -5.04 Total: -14.53 kcal Atomic # 14 Polarization: -3.98 SS G_CDS: 2.15 Total: -1.84 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -1.12 Total: -0.59 kcal Total: -26.57 -2.76 -29.32 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15111636_6739946.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.132 kcal (2) G-P(sol) polarization free energy of solvation -26.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds