Wall clock time and date at job start Sun Mar 7 2021 08:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35655 * 116.99688 * 2 1 4 4 C 1.38658 * 120.15240 * 0.02562 * 3 2 1 5 5 C 1.38114 * 120.08472 * 179.97438 * 4 3 2 6 6 C 1.38499 * 120.39153 * 359.97438 * 5 4 3 7 7 C 1.50708 * 119.84594 * 180.02562 * 6 5 4 8 8 O 1.42901 * 109.47191 * 245.00263 * 7 6 5 9 9 Si 1.86298 * 109.47129 * 5.00449 * 7 6 5 10 10 H 1.48508 * 109.47032 * 59.99672 * 9 7 6 11 11 H 1.48498 * 109.47440 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47112 * 300.00012 * 9 7 6 13 13 C 1.37824 * 120.30856 * 0.02562 * 6 5 4 14 14 C 1.39695 * 119.90145 * 359.73449 * 13 6 5 15 15 C 1.47484 * 120.19152 * 180.27927 * 14 13 6 16 16 O 1.21596 * 120.00119 * 180.23484 * 15 14 13 17 17 N 1.34781 * 120.00248 * 0.23049 * 15 14 13 18 18 C 1.38898 * 119.99828 * 180.02562 * 17 15 14 19 19 N 1.29643 * 124.94625 * 359.69781 * 18 17 15 20 20 C 1.32005 * 116.90875 * 179.83904 * 19 18 17 21 21 C 1.33432 * 114.57033 * 0.45013 * 20 19 18 22 22 C 1.50701 * 125.96862 * 179.76352 * 21 20 19 23 23 C 1.50702 * 109.47021 * 89.97370 * 22 21 20 24 24 C 1.38346 * 119.92121 * 89.99973 * 23 22 21 25 25 C 1.38392 * 120.30113 * 180.02562 * 24 23 22 26 26 C 1.37927 * 120.15320 * 0.02562 * 25 24 23 27 27 C 1.39652 * 119.84549 * 0.02562 * 26 25 24 28 28 C 1.43193 * 120.15080 * 180.02562 * 27 26 25 29 29 N 9.76105 * 114.97982 * 18.57880 * 15 1 2 30 30 C 1.37962 * 119.92512 * 269.73103 * 23 22 21 31 31 S 1.70976 * 124.94379 * 180.02562 * 18 17 15 32 32 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47054 * 299.99658 * 1 2 3 34 34 H 1.09000 * 109.47187 * 59.99713 * 1 2 3 35 35 H 1.07995 * 119.96069 * 0.02562 * 4 3 2 36 36 H 1.07996 * 119.79656 * 180.02562 * 5 4 3 37 37 H 1.08996 * 109.47023 * 125.00362 * 7 6 5 38 38 H 0.96703 * 113.99504 * 60.00165 * 8 7 6 39 39 H 1.08001 * 120.05039 * 180.02562 * 13 6 5 40 40 H 0.96991 * 119.99996 * 0.02562 * 17 15 14 41 41 H 1.08005 * 122.71131 * 180.21166 * 20 19 18 42 42 H 1.08998 * 109.47735 * 209.97063 * 22 21 20 43 43 H 1.09001 * 109.47267 * 329.97680 * 22 21 20 44 44 H 1.07991 * 119.84901 * 0.02562 * 24 23 22 45 45 H 1.07999 * 119.92076 * 180.02562 * 25 24 23 46 46 H 1.07995 * 120.07522 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.08105 * 359.97438 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2927 2.3736 0.0005 5 6 1.9211 3.6035 0.0011 6 6 3.3038 3.6838 0.0016 7 6 3.9767 5.0324 0.0028 8 8 4.6992 5.2052 -1.2179 9 14 2.6882 6.3692 0.1565 10 1 1.9373 6.1894 1.4251 11 1 3.3512 7.6979 0.1582 12 1 1.7490 6.2856 -0.9907 13 6 4.0672 2.5364 0.0011 14 6 3.4447 1.2858 0.0056 15 6 4.2554 0.0538 0.0113 16 8 3.7099 -1.0330 0.0109 17 7 5.6009 0.1324 0.0168 18 6 6.3643 -1.0280 0.0216 19 7 5.8847 -2.2324 0.0269 20 6 6.7573 -3.2229 0.0277 21 6 8.0346 -2.8371 0.0323 22 6 9.2346 -3.7487 0.0393 23 6 9.6403 -4.0559 -1.3792 24 6 10.5513 -3.2418 -2.0282 25 6 10.9290 -3.5163 -3.3310 26 6 10.3982 -4.6046 -3.9915 27 6 9.4772 -5.4299 -3.3428 28 6 8.9224 -6.5618 -4.0222 29 7 8.4906 -8.2803 -2.7968 30 6 9.1064 -5.1515 -2.0258 31 16 8.0734 -1.0758 0.0295 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8900 35 1 0.2141 2.3191 0.0014 36 1 1.3307 4.5078 0.0019 37 1 4.6660 5.0937 0.8448 38 1 4.1475 5.1623 -2.0109 39 1 5.1451 2.6039 0.0019 40 1 6.0360 0.9992 0.0174 41 1 6.4613 -4.2616 0.0285 42 1 10.0603 -3.2587 0.5552 43 1 8.9835 -4.6760 0.5543 44 1 10.9697 -2.3882 -1.5158 45 1 11.6410 -2.8769 -3.8315 46 1 10.6934 -4.8174 -5.0083 47 1 8.3989 -5.7890 -1.5164 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15421976_12496546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:31:27 Heat of formation + Delta-G solvation = 313.217193 kcal Electronic energy + Delta-G solvation = -33940.630551 eV Core-core repulsion = 29273.947466 eV Total energy + Delta-G solvation = -4666.683085 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 409.105 amu Computer time = 35.21 seconds Orbital eigenvalues (eV) -42.12960 -41.23198 -40.73244 -39.78506 -39.25984 -37.14146 -36.41865 -35.11329 -33.15462 -32.87681 -31.91531 -30.99914 -28.69103 -27.79882 -26.23747 -26.18435 -26.14856 -24.87684 -24.23662 -23.28560 -22.91469 -22.24498 -20.70278 -20.52088 -19.86519 -19.13934 -18.35844 -18.00659 -17.78575 -17.61084 -17.11482 -16.95154 -16.61766 -16.57799 -16.35758 -16.07815 -15.90779 -15.83752 -15.75292 -15.17535 -15.16301 -14.87579 -14.76775 -14.63853 -14.50690 -13.84843 -13.73541 -13.68691 -13.53091 -13.32387 -13.18271 -12.64764 -12.51226 -12.33032 -12.22619 -12.15694 -12.05826 -11.95513 -11.62992 -11.58419 -11.52706 -10.82862 -10.54015 -10.38621 -10.34920 -10.30373 -10.14616 -9.60544 -9.45902 -9.30763 -9.01322 -1.38347 -0.63179 -0.26602 -0.22471 -0.17356 0.07366 0.10890 0.13417 0.43918 0.91929 1.20571 1.46283 1.48486 1.54904 1.67859 1.89166 1.96224 2.16764 2.43496 2.57082 3.08166 3.42740 3.45839 3.51026 3.54424 3.61015 3.66517 3.71087 3.80915 3.85272 3.88949 3.94872 4.04013 4.04769 4.20069 4.22093 4.28931 4.29794 4.46537 4.55698 4.56096 4.62944 4.64235 4.64358 4.67137 4.77612 4.82980 4.94582 4.99045 5.07049 5.09247 5.17634 5.18265 5.47010 5.55658 5.80679 6.23274 6.63921 6.74040 6.98054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.315 6.315 3 C 0.175 3.825 4 C -0.210 4.210 5 C -0.050 4.050 6 C -0.163 4.163 7 C -0.068 4.068 8 O -0.550 6.550 9 Si 0.971 3.029 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.249 1.249 13 C -0.010 4.010 14 C -0.193 4.193 15 C 0.553 3.447 16 O -0.498 6.498 17 N -0.624 5.624 18 C 0.246 3.754 19 N -0.520 5.520 20 C 0.049 3.951 21 C -0.233 4.233 22 C 0.004 3.996 23 C -0.117 4.117 24 C -0.034 4.034 25 C -0.143 4.143 26 C -0.004 4.004 27 C -0.327 4.327 28 C 0.389 3.611 29 N -0.421 5.421 30 C -0.045 4.045 31 S 0.208 5.792 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.162 0.838 36 H 0.148 0.852 37 H 0.134 0.866 38 H 0.390 0.610 39 H 0.160 0.840 40 H 0.437 0.563 41 H 0.173 0.827 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.163 0.837 45 H 0.174 0.826 46 H 0.175 0.825 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.131 12.513 -1.655 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.227 6.227 3 C 0.127 3.873 4 C -0.229 4.229 5 C -0.067 4.067 6 C -0.164 4.164 7 C -0.179 4.179 8 O -0.357 6.357 9 Si 0.796 3.204 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.173 1.173 13 C -0.029 4.029 14 C -0.198 4.198 15 C 0.340 3.660 16 O -0.369 6.369 17 N -0.278 5.278 18 C -0.121 4.121 19 N -0.242 5.242 20 C -0.102 4.102 21 C -0.356 4.356 22 C -0.036 4.036 23 C -0.117 4.117 24 C -0.053 4.053 25 C -0.161 4.161 26 C -0.023 4.023 27 C -0.328 4.328 28 C 0.306 3.694 29 N -0.334 5.334 30 C -0.065 4.065 31 S 0.460 5.540 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.179 0.821 36 H 0.165 0.835 37 H 0.152 0.848 38 H 0.239 0.761 39 H 0.178 0.822 40 H 0.279 0.721 41 H 0.190 0.810 42 H 0.136 0.864 43 H 0.118 0.882 44 H 0.181 0.819 45 H 0.191 0.809 46 H 0.193 0.807 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.605 12.315 -0.623 12.847 hybrid contribution -0.729 -0.535 0.977 1.331 sum 2.876 11.780 0.354 12.131 Atomic orbital electron populations 1.23456 0.76325 1.05492 1.02964 1.86344 1.23423 1.26465 1.86437 1.19375 0.91175 0.85591 0.91182 1.21437 1.01760 0.90834 1.08854 1.21361 0.94336 0.97929 0.93123 1.20274 0.93439 0.96502 1.06185 1.24892 1.04414 0.97319 0.91296 1.86498 1.38531 1.94976 1.15660 0.85378 0.76839 0.76987 0.81213 1.18091 1.20175 1.17306 1.21161 1.01049 0.88674 0.91974 1.19166 0.90803 0.93070 1.16733 1.18632 0.81408 0.89613 0.76360 1.90945 1.71077 1.30043 1.44883 1.42928 1.05802 1.06454 1.72663 1.23884 0.94856 0.89977 1.03430 1.66548 1.38774 0.98144 1.20721 1.21632 0.87647 0.99176 1.01741 1.25774 0.98961 0.96381 1.14468 1.19049 0.93610 0.98343 0.92599 1.20001 0.98621 0.96004 0.97124 1.22015 0.91533 0.97006 0.94697 1.21788 1.01415 0.97971 0.94903 1.21924 0.90040 0.89643 1.00725 1.22017 1.07691 1.05636 0.97409 1.80765 0.28369 0.71041 0.89197 1.98902 1.70950 1.25026 0.38504 1.21871 0.95854 0.96367 0.92390 1.83453 0.98187 1.02144 1.70249 0.87582 0.90715 0.90650 0.82100 0.83485 0.84838 0.76101 0.82229 0.72113 0.81047 0.86427 0.88212 0.81895 0.80894 0.80718 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 407. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.32 -2.93 8.57 -68.79 -0.59 -3.52 16 3 C 0.18 0.92 6.70 22.85 0.15 1.07 16 4 C -0.21 0.29 9.03 22.34 0.20 0.49 16 5 C -0.05 0.21 8.65 22.30 0.19 0.40 16 6 C -0.16 0.75 5.35 -19.90 -0.11 0.65 16 7 C -0.07 0.50 2.79 71.24 0.20 0.69 16 8 O -0.55 3.32 12.83 -148.98 -1.91 1.41 16 9 Si 0.97 -5.88 25.12 68.60 1.72 -4.16 16 10 H -0.26 1.20 7.11 99.48 0.71 1.91 16 11 H -0.28 0.45 7.11 99.48 0.71 1.16 16 12 H -0.25 1.57 7.04 99.48 0.70 2.27 16 13 C -0.01 0.03 9.16 22.52 0.21 0.24 16 14 C -0.19 -0.87 5.89 -20.01 -0.12 -0.98 16 15 C 0.55 5.63 7.72 86.68 0.67 6.30 16 16 O -0.50 -10.16 13.79 16.90 0.23 -9.93 16 17 N -0.62 -2.22 5.35 -316.60 -1.69 -3.91 16 18 C 0.25 1.65 8.01 179.23 1.44 3.08 16 19 N -0.52 -6.98 8.64 -201.81 -1.74 -8.73 16 20 C 0.05 0.38 11.24 83.58 0.94 1.32 16 21 C -0.23 -0.19 5.82 24.60 0.14 -0.05 16 22 C 0.00 -0.01 5.87 29.10 0.17 0.16 16 23 C -0.12 0.28 5.11 -19.90 -0.10 0.18 16 24 C -0.03 0.23 9.69 22.33 0.22 0.45 16 25 C -0.14 1.15 10.03 22.23 0.22 1.37 16 26 C 0.00 0.02 9.76 22.54 0.22 0.24 16 27 C -0.33 -0.13 5.73 -21.36 -0.12 -0.25 16 28 C 0.39 0.78 19.69 69.06 1.36 2.14 16 29 N -0.42 -6.13 24.48 37.02 0.91 -5.22 16 30 C -0.05 -0.09 9.40 22.54 0.21 0.12 16 31 S 0.21 -0.43 23.22 -56.49 -1.31 -1.75 16 32 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 33 H 0.07 -0.31 7.66 -2.38 -0.02 -0.33 16 34 H 0.07 -0.32 7.66 -2.39 -0.02 -0.34 16 35 H 0.16 -0.98 6.30 -2.91 -0.02 -1.00 16 36 H 0.15 -1.18 4.83 -2.91 -0.01 -1.19 16 37 H 0.13 -1.31 7.96 -2.39 -0.02 -1.33 16 38 H 0.39 -4.54 8.70 -74.06 -0.64 -5.19 16 39 H 0.16 -1.42 6.40 -2.91 -0.02 -1.44 16 40 H 0.44 -2.38 6.85 -92.71 -0.64 -3.02 16 41 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 42 H 0.12 -1.03 8.08 -2.39 -0.02 -1.05 16 43 H 0.10 -0.38 8.08 -2.39 -0.02 -0.39 16 44 H 0.16 -2.03 8.06 -2.92 -0.02 -2.05 16 45 H 0.17 -2.41 8.06 -2.91 -0.02 -2.44 16 46 H 0.18 -1.96 8.06 -2.91 -0.02 -1.99 16 47 H 0.12 0.53 8.06 -2.91 -0.02 0.51 16 Total: 0.00 -35.39 429.68 3.37 -32.02 By element: Atomic # 1 Polarization: -15.50 SS G_CDS: 0.55 Total: -14.95 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.21 Total: 18.74 kcal Atomic # 7 Polarization: -15.33 SS G_CDS: -2.53 Total: -17.86 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: -2.27 Total: -12.04 kcal Atomic # 14 Polarization: -5.88 SS G_CDS: 1.72 Total: -4.16 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -1.31 Total: -1.75 kcal Total: -35.39 3.37 -32.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15421976_12496546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 345.233 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 309.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 313.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 35.22 seconds