Wall clock time and date at job start Sun Mar 7 2021 02:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35991 * 117.00364 * 2 1 4 4 C 1.39154 * 120.07345 * 180.02562 * 3 2 1 5 5 O 1.35987 * 120.07525 * 359.97438 * 4 3 2 6 6 C 1.42904 * 117.00217 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47145 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00164 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99795 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99936 * 179.97438 * 9 7 6 11 11 H 1.09002 * 112.84962 * 23.80073 * 10 9 7 12 12 C 1.53781 * 113.61535 * 154.99749 * 10 9 7 13 13 C 1.53772 * 87.08202 * 89.11509 * 12 10 9 14 14 H 1.09003 * 113.61802 * 270.88409 * 13 12 10 15 15 C 1.50697 * 113.61586 * 139.98302 * 13 12 10 16 16 C 1.38365 * 119.84579 * 299.72661 * 15 13 12 17 17 C 1.37950 * 120.15257 * 179.76507 * 16 15 13 18 18 C 1.39632 * 119.84359 * 0.52948 * 17 16 15 19 19 C 1.43205 * 120.15004 * 179.70358 * 18 17 16 20 20 N 9.69816 * 155.97818 * 141.50235 * 9 1 2 21 21 C 1.39629 * 119.70118 * 359.71987 * 18 17 16 22 22 C 1.37948 * 119.84662 * 0.02562 * 21 18 17 23 23 C 1.53775 * 87.08375 * 25.43298 * 13 12 10 24 24 C 1.38562 * 119.85273 * 179.97438 * 4 3 2 25 25 C 1.38253 * 120.00018 * 359.97438 * 24 4 3 26 26 N 1.48001 * 119.92440 * 180.02562 * 25 24 4 27 27 O 1.21793 * 120.00501 * 0.02562 * 26 25 24 28 28 O 1.21799 * 119.99706 * 179.97438 * 26 25 24 29 29 C 1.38254 * 120.14464 * 359.97438 * 25 24 4 30 30 C 1.50700 * 119.92591 * 179.97438 * 29 25 24 31 31 O 1.42892 * 109.47095 * 74.99893 * 30 29 25 32 32 Si 1.86302 * 109.47104 * 195.00084 * 30 29 25 33 33 C 1.38244 * 120.14707 * 359.74633 * 29 25 24 34 34 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 35 35 H 1.09001 * 109.46938 * 59.99845 * 1 2 3 36 36 H 1.09004 * 109.46926 * 299.99967 * 1 2 3 37 37 H 1.08996 * 109.47217 * 300.00125 * 6 5 4 38 38 H 1.09004 * 109.46575 * 60.00471 * 6 5 4 39 39 H 0.97002 * 120.00012 * 359.97438 * 9 7 6 40 40 H 1.09004 * 113.61523 * 203.66951 * 12 10 9 41 41 H 1.09005 * 113.61624 * 334.48103 * 12 10 9 42 42 H 1.08003 * 119.92364 * 359.97438 * 16 15 13 43 43 H 1.08004 * 120.07731 * 180.25213 * 17 16 15 44 44 H 1.07997 * 120.07859 * 179.97438 * 21 18 17 45 45 H 1.07995 * 119.92565 * 179.97438 * 22 21 18 46 46 H 1.08996 * 113.61613 * 220.02268 * 23 13 12 47 47 H 1.08999 * 113.61525 * 89.11573 * 23 13 12 48 48 H 1.07996 * 120.00374 * 180.02562 * 24 4 3 49 49 H 1.09000 * 109.47125 * 315.00000 * 30 29 25 50 50 H 0.96705 * 114.00348 * 59.99895 * 31 30 29 51 51 H 1.48504 * 109.99830 * 58.68039 * 32 30 29 52 52 H 1.48496 * 109.99569 * 179.97438 * 32 30 29 53 53 H 1.08001 * 120.00049 * 180.27280 * 33 29 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2862 -0.0005 5 8 4.1796 0.1476 -0.0005 6 6 5.6004 0.3005 -0.0005 7 6 6.2519 -1.0584 -0.0012 8 8 5.5670 -2.0593 -0.0011 9 7 7.5957 -1.1614 -0.0008 10 6 8.2290 -2.4825 -0.0008 11 1 7.5834 -3.2614 -0.4065 12 6 9.6470 -2.4857 -0.5959 13 6 10.1580 -2.1819 0.8223 14 1 10.2142 -1.1169 1.0474 15 6 11.4191 -2.9246 1.1816 16 6 11.4267 -4.3082 1.1832 17 6 12.5789 -4.9945 1.5064 18 6 13.7362 -4.2896 1.8432 19 6 14.9341 -4.9954 2.1860 20 7 15.8851 -5.5563 2.4539 21 6 13.7200 -2.8934 1.8447 22 6 12.5623 -2.2198 1.5143 23 6 8.8772 -2.8549 1.3431 24 6 4.0604 2.5231 -0.0011 25 6 3.3031 3.6798 -0.0016 26 7 3.9717 5.0001 -0.0028 27 8 5.1878 5.0670 -0.0037 28 8 3.3058 6.0199 -0.0037 29 6 1.9225 3.6057 -0.0021 30 6 1.1018 4.8696 -0.0021 31 8 1.1353 5.4593 -1.3033 32 14 -0.6595 4.4663 0.4517 33 6 1.2933 2.3747 -0.0074 34 1 -0.3634 -1.0277 -0.0005 35 1 -0.3633 0.5139 -0.8900 36 1 -0.3633 0.5139 0.8900 37 1 5.9067 0.8503 -0.8905 38 1 5.9066 0.8502 0.8895 39 1 8.1435 -0.3609 -0.0004 40 1 9.9598 -3.4592 -0.9736 41 1 9.8239 -1.6791 -1.3074 42 1 10.5293 -4.8522 0.9274 43 1 12.5845 -6.0745 1.5032 44 1 14.6115 -2.3420 2.1046 45 1 12.5483 -1.1400 1.5154 46 1 8.4329 -2.3454 2.1981 47 1 8.9795 -3.9293 1.4956 48 1 5.1387 2.5838 -0.0019 49 1 1.5131 5.5699 0.7249 50 1 0.7837 4.8907 -2.0020 51 1 -0.7048 3.8233 1.7896 52 1 -1.4791 5.7046 0.4559 53 1 0.2147 2.3196 -0.0123 There are 80 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 80 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15505404_4549636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:35:47 Heat of formation + Delta-G solvation = -8.502257 kcal Electronic energy + Delta-G solvation = -41439.375003 eV Core-core repulsion = 35828.112695 eV Total energy + Delta-G solvation = -5611.262309 eV No. of doubly occupied orbitals = 80 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 440.155 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.38239 -42.10785 -41.58594 -40.65237 -39.75946 -39.22758 -38.84248 -37.71480 -37.43751 -37.10760 -34.70038 -32.66472 -32.58632 -32.20476 -31.93187 -29.80617 -28.73328 -27.89637 -26.69808 -26.62656 -25.76480 -24.05199 -23.72800 -23.32339 -23.08571 -21.96598 -20.76843 -20.29244 -19.87936 -19.77822 -19.48935 -18.76608 -18.65544 -18.29420 -17.81506 -17.71032 -17.34270 -17.11875 -16.82353 -16.58992 -16.51071 -16.35368 -16.06855 -15.67215 -15.65341 -15.51751 -15.18004 -15.13915 -14.84652 -14.69384 -14.53334 -14.37258 -14.30127 -14.08269 -13.88264 -13.85291 -13.76441 -13.46169 -13.39782 -13.15854 -13.01574 -12.91639 -12.65328 -12.47394 -12.41326 -12.30729 -12.25361 -12.20405 -12.19476 -11.80452 -11.76396 -11.65340 -11.17335 -11.05313 -10.51937 -10.43848 -10.13856 -9.93183 -9.63864 -9.46753 -5.12531 -1.34589 -0.41282 -0.22116 0.18229 0.32598 0.43963 1.14140 1.26606 1.41444 1.57064 1.58307 1.89026 1.91560 1.92166 1.95108 2.36765 2.86085 2.86614 2.99956 3.19705 3.29496 3.48178 3.51409 3.54317 3.58019 3.72562 3.76070 3.91048 3.93601 3.96454 3.99032 3.99804 4.06089 4.08163 4.13499 4.24381 4.29555 4.41200 4.43240 4.43480 4.53362 4.56834 4.69888 4.75480 4.82522 4.84080 4.87244 4.91327 4.96896 5.10646 5.14298 5.20831 5.27077 5.30300 5.38797 5.51472 5.61975 5.71573 5.90802 6.08398 6.40419 6.43161 6.48537 6.73012 7.12221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.307 6.307 3 C 0.171 3.829 4 C 0.101 3.899 5 O -0.290 6.290 6 C 0.025 3.975 7 C 0.519 3.481 8 O -0.565 6.565 9 N -0.692 5.692 10 C 0.113 3.887 11 H 0.085 0.915 12 C -0.123 4.123 13 C -0.070 4.070 14 H 0.122 0.878 15 C -0.037 4.037 16 C -0.121 4.121 17 C -0.069 4.069 18 C -0.055 4.055 19 C 0.276 3.724 20 N -0.477 5.477 21 C -0.069 4.069 22 C -0.116 4.116 23 C -0.144 4.144 24 C -0.109 4.109 25 C -0.046 4.046 26 N 0.036 4.964 27 O -0.184 6.184 28 O -0.169 6.169 29 C -0.040 4.040 30 C -0.091 4.091 31 O -0.536 6.536 32 Si 0.786 3.214 33 C -0.163 4.163 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.422 0.578 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.150 0.850 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.156 0.844 46 H 0.070 0.930 47 H 0.100 0.900 48 H 0.185 0.815 49 H 0.114 0.886 50 H 0.393 0.607 51 H -0.272 1.272 52 H -0.291 1.291 53 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 -0.517 -3.198 7.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.218 6.218 3 C 0.122 3.878 4 C 0.054 3.946 5 O -0.203 6.203 6 C -0.052 4.052 7 C 0.305 3.695 8 O -0.443 6.443 9 N -0.346 5.346 10 C 0.007 3.993 11 H 0.103 0.897 12 C -0.161 4.161 13 C -0.088 4.088 14 H 0.140 0.860 15 C -0.038 4.038 16 C -0.139 4.139 17 C -0.089 4.089 18 C -0.058 4.058 19 C -0.038 4.038 20 N -0.153 5.153 21 C -0.090 4.090 22 C -0.133 4.133 23 C -0.182 4.182 24 C -0.129 4.129 25 C -0.131 4.131 26 N 0.549 4.451 27 O -0.395 6.395 28 O -0.382 6.382 29 C -0.043 4.043 30 C -0.199 4.199 31 O -0.343 6.343 32 Si 0.688 3.312 33 C -0.182 4.182 34 H 0.139 0.861 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.260 0.740 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.167 0.833 43 H 0.157 0.843 44 H 0.158 0.842 45 H 0.174 0.826 46 H 0.088 0.912 47 H 0.119 0.881 48 H 0.202 0.798 49 H 0.132 0.868 50 H 0.242 0.758 51 H -0.198 1.198 52 H -0.219 1.219 53 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.382 -2.520 -1.902 7.120 hybrid contribution 1.159 1.253 0.356 1.744 sum -5.224 -1.266 -1.546 5.593 Atomic orbital electron populations 1.23817 0.74714 1.07087 1.04183 1.86332 1.24830 1.24504 1.86183 1.18684 0.89212 0.86361 0.93563 1.17947 0.88789 0.85124 1.02730 1.86302 1.18536 1.26749 1.88701 1.22933 0.78770 0.96190 1.07321 1.20276 0.83112 0.90307 0.75798 1.90789 1.63943 1.39787 1.49795 1.45346 1.04964 1.09903 1.74349 1.21909 0.94359 0.84988 0.98014 0.89684 1.23392 0.92089 1.04641 0.96005 1.21730 0.89938 1.00515 0.96611 0.86036 1.20148 0.95173 0.93604 0.94909 1.21182 0.98226 0.94116 1.00351 1.21336 0.91015 1.00862 0.95736 1.16165 0.87935 0.93114 1.08597 1.26230 0.92890 0.92498 0.92208 1.81321 1.12569 1.10116 1.11277 1.21382 0.99833 0.91425 0.96321 1.21275 0.91288 1.01590 0.99194 1.23591 0.95183 1.02330 0.97145 1.20910 1.03037 0.88086 1.00854 1.20565 0.92754 0.81938 1.17821 1.43718 1.00820 1.03447 0.97143 1.94495 0.96521 1.94119 1.54403 1.94583 1.64424 1.25431 1.53723 1.20216 0.91104 0.97626 0.95317 1.25750 1.10552 0.92793 0.90796 1.86669 1.87110 1.44593 1.15935 0.94411 0.71814 0.82137 0.82824 1.21079 1.01758 0.88119 1.07219 0.86061 0.88817 0.90221 0.85316 0.85457 0.73996 0.87790 0.88952 0.83252 0.84317 0.84161 0.82622 0.91159 0.88145 0.79829 0.86843 0.75803 1.19786 1.21851 0.79036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.17 16 2 O -0.31 0.50 10.28 -79.59 -0.82 -0.31 16 3 C 0.17 -0.42 6.70 22.57 0.15 -0.27 16 4 C 0.10 -0.11 6.70 22.57 0.15 0.04 16 5 O -0.29 -0.36 9.45 -66.99 -0.63 -0.99 16 6 C 0.03 -0.17 5.22 71.24 0.37 0.20 16 7 C 0.52 -0.90 7.91 87.66 0.69 -0.21 16 8 O -0.57 -5.54 16.10 15.99 0.26 -5.29 16 9 N -0.69 6.23 5.26 -440.03 -2.32 3.91 16 10 C 0.11 -0.85 4.32 45.52 0.20 -0.66 16 11 H 0.08 -0.18 7.46 -2.39 -0.02 -0.20 16 12 C -0.12 1.47 7.29 31.12 0.23 1.70 16 13 C -0.07 0.85 3.85 -11.02 -0.04 0.81 16 14 H 0.12 -1.89 8.09 -2.39 -0.02 -1.91 16 15 C -0.04 0.34 5.30 -19.81 -0.10 0.24 16 16 C -0.12 0.96 8.60 22.23 0.19 1.15 16 17 C -0.07 0.33 9.76 22.54 0.22 0.55 16 18 C -0.05 0.10 5.73 -21.36 -0.12 -0.03 16 19 C 0.28 1.36 15.33 88.33 1.35 2.72 16 20 N -0.48 -5.51 18.54 19.01 0.35 -5.16 16 21 C -0.07 0.36 9.76 22.54 0.22 0.58 16 22 C -0.12 1.01 9.69 22.23 0.22 1.23 16 23 C -0.14 1.29 7.25 31.12 0.23 1.51 16 24 C -0.11 0.25 8.54 22.35 0.19 0.44 16 25 C -0.05 -0.09 6.85 36.39 0.25 0.15 16 26 N 0.04 0.30 4.45 -46.46 -0.21 0.09 16 27 O -0.18 -1.70 18.44 18.90 0.35 -1.35 16 28 O -0.17 -2.01 14.62 25.11 0.37 -1.64 16 29 C -0.04 0.07 5.26 -19.86 -0.10 -0.04 16 30 C -0.09 0.07 1.74 71.24 0.12 0.19 16 31 O -0.54 -0.20 11.79 -129.60 -1.53 -1.73 16 32 Si 0.79 -4.70 29.91 68.60 2.05 -2.65 16 33 C -0.16 1.04 7.64 22.35 0.17 1.21 16 34 H 0.12 -1.52 8.14 -2.39 -0.02 -1.54 16 35 H 0.09 -1.52 7.65 -2.39 -0.02 -1.53 16 36 H 0.08 -1.11 7.68 -2.38 -0.02 -1.13 16 37 H 0.13 -1.66 7.66 -2.39 -0.02 -1.67 16 38 H 0.13 -1.62 7.67 -2.38 -0.02 -1.64 16 39 H 0.42 -6.85 8.70 -92.71 -0.81 -7.66 16 40 H 0.10 -1.21 7.73 -2.39 -0.02 -1.23 16 41 H 0.09 -1.25 8.14 -2.38 -0.02 -1.27 16 42 H 0.15 -1.66 6.62 -2.91 -0.02 -1.68 16 43 H 0.14 -0.89 8.06 -2.91 -0.02 -0.92 16 44 H 0.14 -1.01 8.06 -2.91 -0.02 -1.03 16 45 H 0.16 -2.08 8.05 -2.91 -0.02 -2.10 16 46 H 0.07 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.10 -0.92 6.28 -2.39 -0.01 -0.93 16 48 H 0.18 -1.30 5.85 -2.91 -0.02 -1.32 16 49 H 0.11 0.47 6.07 -2.39 -0.01 0.46 16 50 H 0.39 -3.78 8.70 -74.05 -0.64 -4.43 16 51 H -0.27 0.71 7.11 99.48 0.71 1.42 16 52 H -0.29 -0.65 7.11 99.48 0.71 0.06 16 53 H 0.19 -2.59 3.37 -2.91 -0.01 -2.60 16 Total: 0.00 -39.00 454.43 3.20 -35.80 By element: Atomic # 1 Polarization: -33.00 SS G_CDS: -0.37 Total: -33.37 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.69 Total: 12.68 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -2.17 Total: -1.15 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -2.01 Total: -11.31 kcal Atomic # 14 Polarization: -4.70 SS G_CDS: 2.05 Total: -2.65 kcal Total: -39.00 3.20 -35.80 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15505404_4549636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.297 kcal (2) G-P(sol) polarization free energy of solvation -38.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds