Wall clock time and date at job start Sun Mar 7 2021 02:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35996 * 117.00236 * 2 1 4 4 C 1.39154 * 120.07807 * 179.97438 * 3 2 1 5 5 O 1.35996 * 120.06791 * 359.97438 * 4 3 2 6 6 C 1.42902 * 116.99423 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46902 * 180.02562 * 6 5 4 8 8 O 1.21285 * 119.99818 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00050 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00217 * 179.97438 * 9 7 6 11 11 H 1.09005 * 112.84746 * 336.19534 * 10 9 7 12 12 C 1.53776 * 113.61556 * 107.50364 * 10 9 7 13 13 C 1.53774 * 87.08263 * 89.11884 * 12 10 9 14 14 H 1.09004 * 113.69174 * 270.87174 * 13 12 10 15 15 C 1.50699 * 113.61632 * 139.98171 * 13 12 10 16 16 C 1.38361 * 119.84776 * 322.22918 * 15 13 12 17 17 C 1.37946 * 120.15102 * 179.76861 * 16 15 13 18 18 C 1.39631 * 119.84461 * 0.52380 * 17 16 15 19 19 C 1.43207 * 120.14681 * 179.70954 * 18 17 16 20 20 N 9.69816 * 156.01571 * 218.48454 * 9 1 2 21 21 C 1.39626 * 119.70137 * 359.72935 * 18 17 16 22 22 C 1.37949 * 119.84799 * 359.97438 * 21 18 17 23 23 C 1.53781 * 87.08468 * 25.43150 * 13 12 10 24 24 C 1.38563 * 119.85258 * 180.02562 * 4 3 2 25 25 C 1.38236 * 120.00420 * 0.02562 * 24 4 3 26 26 C 1.38261 * 120.14487 * 0.02562 * 25 24 4 27 27 C 1.50699 * 119.92587 * 179.97438 * 26 25 24 28 28 O 1.42892 * 109.47249 * 120.00208 * 27 26 25 29 29 Si 1.86298 * 109.47032 * 359.97438 * 27 26 25 30 30 C 1.38245 * 120.14526 * 0.23396 * 26 25 24 31 31 H 1.09004 * 109.46955 * 60.00281 * 1 2 3 32 32 H 1.09004 * 109.47126 * 179.97438 * 1 2 3 33 33 H 1.08989 * 109.47415 * 299.99766 * 1 2 3 34 34 H 1.08997 * 109.47139 * 299.99564 * 6 5 4 35 35 H 1.08998 * 109.47277 * 59.99761 * 6 5 4 36 36 H 0.97001 * 120.00287 * 0.02562 * 9 7 6 37 37 H 1.09005 * 113.61447 * 203.66437 * 12 10 9 38 38 H 1.08998 * 113.61205 * 334.56475 * 12 10 9 39 39 H 1.08000 * 119.91931 * 359.97438 * 16 15 13 40 40 H 1.08001 * 120.07686 * 180.25552 * 17 16 15 41 41 H 1.07996 * 120.07777 * 179.97438 * 21 18 17 42 42 H 1.07995 * 119.92550 * 180.02562 * 22 21 18 43 43 H 1.08991 * 113.61713 * 220.02176 * 23 13 12 44 44 H 1.08993 * 113.68887 * 89.12237 * 23 13 12 45 45 H 1.08001 * 119.99543 * 180.02562 * 24 4 3 46 46 H 1.07997 * 119.93023 * 180.02562 * 25 24 4 47 47 H 1.09004 * 109.46453 * 240.00276 * 27 26 25 48 48 H 0.96703 * 114.00176 * 299.99748 * 28 27 26 49 49 H 1.48506 * 109.99834 * 58.68765 * 29 27 26 50 50 H 1.48502 * 110.00011 * 180.02562 * 29 27 26 51 51 H 1.07991 * 120.00096 * 179.74445 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2864 0.0005 5 8 4.1795 0.1477 0.0016 6 6 5.6003 0.3008 0.0027 7 6 6.2519 -1.0581 0.0031 8 8 5.5670 -2.0590 0.0030 9 7 7.5957 -1.1611 0.0036 10 6 8.2292 -2.4821 0.0046 11 1 7.5833 -3.2609 0.4103 12 6 8.8781 -2.8551 -1.3387 13 6 10.1586 -2.1819 -0.8175 14 1 10.2162 -1.1169 -1.0426 15 6 11.4199 -2.9247 -1.1758 16 6 11.4307 -4.3082 -1.1657 17 6 12.5805 -4.9945 -1.4972 18 6 13.7382 -4.2897 -1.8327 19 6 14.9372 -4.9956 -2.1719 20 7 15.8884 -5.5579 -2.4361 21 6 13.7217 -2.8935 -1.8357 22 6 12.5633 -2.2199 -1.5082 23 6 9.6468 -2.4850 0.6006 24 6 4.0602 2.5234 0.0011 25 6 3.3029 3.6799 0.0016 26 6 1.9223 3.6057 0.0021 27 6 1.1015 4.8696 0.0033 28 8 0.2766 4.9030 -1.1630 29 14 2.2364 6.3470 0.0046 30 6 1.2931 2.3748 0.0070 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5137 0.8899 34 1 5.9072 0.8501 -0.8873 35 1 5.9058 0.8509 0.8926 36 1 8.1435 -0.3606 0.0040 37 1 8.9806 -3.9296 -1.4907 38 1 8.4342 -2.3460 -2.1943 39 1 10.5360 -4.8520 -0.9009 40 1 12.5864 -6.0745 -1.4929 41 1 14.6137 -2.3422 -2.0939 42 1 12.5490 -1.1400 -1.5105 43 1 9.8236 -1.6772 1.3106 44 1 9.9588 -3.4579 0.9801 45 1 5.1385 2.5841 0.0011 46 1 3.7907 4.6434 0.0016 47 1 0.4731 4.8938 0.8937 48 1 0.7701 4.8840 -1.9944 49 1 3.1209 6.3090 -1.1878 50 1 1.4391 7.5999 0.0063 51 1 0.2146 2.3196 0.0116 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15505404_60476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:36:27 Heat of formation + Delta-G solvation = -18.332085 kcal Electronic energy + Delta-G solvation = -34364.664931 eV Core-core repulsion = 29583.992805 eV Total energy + Delta-G solvation = -4780.672126 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.161 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.84668 -41.48359 -40.53417 -39.52760 -38.99174 -38.71264 -37.42789 -36.99916 -34.65605 -32.34688 -32.02248 -31.84784 -31.41104 -29.50650 -28.44281 -26.68005 -26.61119 -26.11922 -23.90216 -23.64577 -23.14599 -22.54604 -21.77559 -20.28701 -19.83220 -19.76443 -18.55494 -18.40011 -17.97079 -17.51870 -17.35493 -16.93928 -16.66959 -16.61775 -16.48421 -16.12685 -15.83838 -15.80324 -15.60025 -15.45372 -15.38087 -15.13073 -14.82736 -14.64862 -14.50582 -14.31595 -14.25585 -14.01679 -13.76816 -13.73940 -13.54099 -13.46743 -13.36075 -13.14588 -12.90206 -12.58798 -12.56267 -12.18025 -12.15083 -12.13811 -11.96917 -11.79009 -11.63351 -11.62653 -11.15598 -10.95992 -10.60779 -10.09847 -9.91816 -9.75660 -9.62486 -8.89171 -4.87203 -0.20952 0.19346 0.30538 0.45257 1.35094 1.49261 1.52017 1.57904 1.65508 1.90049 2.01687 2.33030 2.58301 2.61184 2.87103 2.87778 3.41592 3.53393 3.57136 3.67826 3.74585 3.78176 3.89184 3.94461 3.95853 4.01007 4.05972 4.08477 4.16880 4.18009 4.31074 4.31285 4.31791 4.38567 4.44668 4.54818 4.58751 4.67238 4.67778 4.72738 4.83943 4.88334 4.93374 4.99094 5.03467 5.12150 5.15193 5.15874 5.23173 5.31794 5.39450 5.40014 5.55519 5.62288 5.73152 5.92142 5.99882 6.41343 6.46158 6.50587 6.58248 7.20741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.335 6.335 3 C 0.076 3.924 4 C 0.086 3.914 5 O -0.315 6.315 6 C 0.033 3.967 7 C 0.514 3.486 8 O -0.574 6.574 9 N -0.690 5.690 10 C 0.111 3.889 11 H 0.079 0.921 12 C -0.145 4.145 13 C -0.067 4.067 14 H 0.125 0.875 15 C -0.038 4.038 16 C -0.122 4.122 17 C -0.070 4.070 18 C -0.055 4.055 19 C 0.276 3.724 20 N -0.477 5.477 21 C -0.069 4.069 22 C -0.114 4.114 23 C -0.122 4.122 24 C -0.158 4.158 25 C -0.110 4.110 26 C -0.117 4.117 27 C -0.086 4.086 28 O -0.551 6.551 29 Si 0.777 3.223 30 C -0.153 4.153 31 H 0.061 0.939 32 H 0.111 0.889 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.423 0.577 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.147 0.853 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.159 0.841 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.178 0.822 46 H 0.159 0.841 47 H 0.122 0.878 48 H 0.386 0.614 49 H -0.275 1.275 50 H -0.308 1.308 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 8.629 3.339 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.030 3.970 4 C 0.041 3.959 5 O -0.229 6.229 6 C -0.044 4.044 7 C 0.301 3.699 8 O -0.452 6.452 9 N -0.344 5.344 10 C 0.005 3.995 11 H 0.098 0.902 12 C -0.184 4.184 13 C -0.085 4.085 14 H 0.143 0.857 15 C -0.038 4.038 16 C -0.140 4.140 17 C -0.090 4.090 18 C -0.058 4.058 19 C -0.038 4.038 20 N -0.153 5.153 21 C -0.089 4.089 22 C -0.132 4.132 23 C -0.160 4.160 24 C -0.177 4.177 25 C -0.127 4.127 26 C -0.117 4.117 27 C -0.194 4.194 28 O -0.359 6.359 29 Si 0.681 3.319 30 C -0.172 4.172 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.261 0.739 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.165 0.835 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.176 0.824 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.195 0.805 46 H 0.176 0.824 47 H 0.139 0.861 48 H 0.235 0.765 49 H -0.201 1.201 50 H -0.237 1.237 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.094 7.355 2.959 8.200 hybrid contribution -0.801 -0.289 -1.224 1.491 sum 1.293 7.067 1.736 7.391 Atomic orbital electron populations 1.23272 0.76877 1.05173 1.02045 1.86187 1.22932 1.26691 1.89110 1.18684 0.90000 0.85550 1.02747 1.18582 0.88130 0.86587 1.02640 1.86226 1.18352 1.29015 1.89270 1.22802 0.79258 0.95208 1.07150 1.20566 0.83095 0.90774 0.75512 1.90782 1.64171 1.40242 1.49980 1.45309 1.04903 1.09731 1.74493 1.21896 0.94370 0.85170 0.98032 0.90246 1.23588 0.95396 1.02214 0.97172 1.21723 0.89735 1.00602 0.96446 0.85698 1.20156 0.95241 0.93535 0.94912 1.21172 0.98205 0.94238 1.00375 1.21322 0.91091 1.00817 0.95805 1.16165 0.87823 0.93183 1.08652 1.26239 0.92894 0.92490 0.92190 1.81326 1.12618 1.10081 1.11295 1.21392 0.99891 0.91351 0.96268 1.21285 0.91134 1.01662 0.99096 1.23382 0.91914 1.04624 0.96097 1.21388 1.02338 0.89205 1.04741 1.21014 0.92336 0.99082 1.00274 1.20125 0.94521 0.94625 1.02477 1.25320 1.00683 1.02398 0.90961 1.86565 1.36813 1.95826 1.16709 0.94032 0.78077 0.72258 0.87485 1.21001 1.00469 0.90603 1.05096 0.92009 0.87111 0.91640 0.85499 0.85168 0.73855 0.88419 0.91209 0.83489 0.84459 0.84038 0.82364 0.88714 0.87986 0.80460 0.82366 0.86052 0.76467 1.20086 1.23664 0.84269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.81 113.37 1.11 1.15 16 2 O -0.33 -3.43 10.28 -79.65 -0.82 -4.25 16 3 C 0.08 0.52 6.70 22.57 0.15 0.67 16 4 C 0.09 0.34 6.70 22.57 0.15 0.49 16 5 O -0.32 -2.09 9.45 -67.09 -0.63 -2.73 16 6 C 0.03 -0.17 5.22 71.24 0.37 0.20 16 7 C 0.51 0.33 7.91 87.66 0.69 1.02 16 8 O -0.57 -7.86 16.10 15.99 0.26 -7.60 16 9 N -0.69 5.56 5.26 -440.03 -2.32 3.24 16 10 C 0.11 -0.70 4.32 45.52 0.20 -0.50 16 11 H 0.08 0.01 7.47 -2.38 -0.02 -0.01 16 12 C -0.15 1.15 7.25 31.12 0.23 1.38 16 13 C -0.07 0.82 3.85 -11.02 -0.04 0.77 16 14 H 0.13 -2.03 8.09 -2.38 -0.02 -2.04 16 15 C -0.04 0.34 5.30 -19.80 -0.10 0.24 16 16 C -0.12 0.91 8.57 22.23 0.19 1.10 16 17 C -0.07 0.31 9.76 22.54 0.22 0.53 16 18 C -0.05 0.10 5.73 -21.36 -0.12 -0.02 16 19 C 0.28 1.34 15.33 88.33 1.35 2.70 16 20 N -0.48 -5.48 18.54 19.01 0.35 -5.13 16 21 C -0.07 0.39 9.76 22.54 0.22 0.61 16 22 C -0.11 1.06 9.69 22.23 0.22 1.28 16 23 C -0.12 1.41 7.29 31.12 0.23 1.64 16 24 C -0.16 0.70 9.04 22.35 0.20 0.90 16 25 C -0.11 0.52 8.66 22.27 0.19 0.71 16 26 C -0.12 0.12 5.39 -19.86 -0.11 0.02 16 27 C -0.09 0.19 2.82 71.24 0.20 0.39 16 28 O -0.55 -0.77 12.77 -148.98 -1.90 -2.67 16 29 Si 0.78 -3.80 29.78 68.60 2.04 -1.76 16 30 C -0.15 -0.44 8.60 22.35 0.19 -0.24 16 31 H 0.06 0.00 7.68 -2.39 -0.02 -0.02 16 32 H 0.11 -0.08 8.14 -2.38 -0.02 -0.10 16 33 H 0.07 -0.04 7.65 -2.39 -0.02 -0.06 16 34 H 0.13 -1.54 7.66 -2.39 -0.02 -1.56 16 35 H 0.13 -1.63 7.66 -2.39 -0.02 -1.65 16 36 H 0.42 -6.95 8.70 -92.71 -0.81 -7.76 16 37 H 0.10 -0.76 6.31 -2.38 -0.02 -0.78 16 38 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.15 -1.51 6.66 -2.91 -0.02 -1.53 16 40 H 0.14 -0.82 8.06 -2.91 -0.02 -0.84 16 41 H 0.14 -1.11 8.06 -2.91 -0.02 -1.13 16 42 H 0.16 -2.28 8.05 -2.91 -0.02 -2.30 16 43 H 0.09 -1.30 8.14 -2.39 -0.02 -1.32 16 44 H 0.10 -1.12 7.71 -2.39 -0.02 -1.14 16 45 H 0.18 -2.33 6.30 -2.91 -0.02 -2.35 16 46 H 0.16 -1.64 4.87 -2.91 -0.01 -1.66 16 47 H 0.12 -0.40 7.96 -2.38 -0.02 -0.41 16 48 H 0.39 -1.62 8.70 -74.06 -0.64 -2.26 16 49 H -0.27 0.62 7.11 99.48 0.71 1.33 16 50 H -0.31 -1.14 7.11 99.48 0.71 -0.44 16 51 H 0.14 0.25 6.30 -2.92 -0.02 0.23 16 Total: 0.00 -36.42 432.40 2.32 -34.10 By element: Atomic # 1 Polarization: -27.84 SS G_CDS: -0.40 Total: -28.24 kcal Atomic # 6 Polarization: 9.30 SS G_CDS: 5.74 Total: 15.04 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -1.96 Total: -1.89 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -3.10 Total: -17.25 kcal Atomic # 14 Polarization: -3.80 SS G_CDS: 2.04 Total: -1.76 kcal Total: -36.42 2.32 -34.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15505404_60476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.765 kcal (2) G-P(sol) polarization free energy of solvation -36.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds