Wall clock time and date at job start Sun Mar 7 2021 05:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34712 * 116.99766 * 2 1 4 4 O 1.21473 * 120.00402 * 359.97438 * 3 2 1 5 5 C 1.47728 * 119.99977 * 180.02562 * 3 2 1 6 6 C 1.39616 * 120.15025 * 179.97438 * 5 3 2 7 7 C 1.37964 * 119.84720 * 180.02562 * 6 5 3 8 8 C 1.50700 * 119.92141 * 179.97438 * 7 6 5 9 9 H 1.08998 * 112.85343 * 348.80316 * 8 7 6 10 10 C 1.53779 * 113.61523 * 119.99844 * 8 7 6 11 11 C 1.53779 * 87.08155 * 139.97518 * 10 8 7 12 12 H 1.08998 * 113.61751 * 219.93459 * 11 10 8 13 13 N 1.46504 * 113.60994 * 89.11677 * 11 10 8 14 14 C 1.34776 * 119.99774 * 155.00182 * 13 11 10 15 15 O 1.21701 * 120.00135 * 359.97438 * 14 13 11 16 16 C 1.46684 * 119.99998 * 179.97438 * 14 13 11 17 17 C 1.37874 * 126.23497 * 179.97438 * 16 14 13 18 18 C 1.39827 * 107.08440 * 179.97438 * 17 16 14 19 19 C 1.50706 * 126.06783 * 180.02562 * 18 17 16 20 20 O 1.42895 * 109.46938 * 64.99448 * 19 18 17 21 21 Si 1.86301 * 109.47233 * 184.99793 * 19 18 17 22 22 C 1.35453 * 107.86560 * 0.25948 * 18 17 16 23 23 N 1.35526 * 108.87249 * 359.57244 * 22 18 17 24 24 C 1.53776 * 87.08209 * 334.56993 * 11 10 8 25 25 C 1.38346 * 120.15068 * 0.25237 * 7 6 5 26 26 C 1.38387 * 120.30014 * 359.48723 * 25 7 6 27 27 C 1.37923 * 120.15340 * 0.51444 * 26 25 7 28 28 H 1.08995 * 109.47474 * 60.00772 * 1 2 3 29 29 H 1.09003 * 109.46758 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47560 * 300.00342 * 1 2 3 31 31 H 1.08001 * 120.06989 * 0.04105 * 6 5 3 32 32 H 1.09009 * 113.61460 * 25.43234 * 10 8 7 33 33 H 1.08993 * 113.61549 * 254.52426 * 10 8 7 34 34 H 0.96997 * 120.00047 * 334.99460 * 13 11 10 35 35 H 1.08000 * 126.45388 * 359.97438 * 17 16 14 36 36 H 1.09001 * 109.46953 * 304.99485 * 19 18 17 37 37 H 0.96696 * 114.00485 * 60.00759 * 20 19 18 38 38 H 1.48501 * 110.00188 * 58.67931 * 21 19 18 39 39 H 1.48498 * 109.99815 * 179.97438 * 21 19 18 40 40 H 1.08006 * 125.56113 * 179.73254 * 22 18 17 41 41 H 0.97005 * 125.68024 * 180.16752 * 23 22 18 42 42 H 1.09006 * 113.61772 * 139.98202 * 24 11 10 43 43 H 1.09002 * 113.61317 * 270.87682 * 24 11 10 44 44 H 1.07997 * 119.84488 * 179.74970 * 25 7 6 45 45 H 1.08001 * 119.92212 * 180.25729 * 26 25 7 46 46 H 1.08001 * 120.07405 * 179.76336 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0634 1.2003 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.1758 2.5200 -0.0011 7 6 5.5539 2.5850 -0.0022 8 6 6.2432 3.9251 -0.0034 9 1 5.5606 4.7521 -0.1983 10 6 7.1524 4.1512 1.2161 11 6 8.1495 4.8139 0.2511 12 1 9.1899 4.5635 0.4582 13 7 7.9337 6.2530 0.0814 14 6 8.9562 7.0485 -0.2906 15 8 10.0588 6.5714 -0.4850 16 6 8.7400 8.4892 -0.4611 17 6 9.6888 9.4170 -0.8351 18 6 9.0532 10.6619 -0.8740 19 6 9.6969 11.9760 -1.2345 20 8 10.1128 11.9435 -2.6012 21 14 8.4695 13.3562 -0.9913 22 6 7.7574 10.4778 -0.5251 23 7 7.5528 9.1612 -0.2774 24 6 7.5185 3.9610 -0.8620 25 6 6.3043 1.4228 -0.0080 26 6 5.6793 0.1881 -0.0021 27 6 4.3024 0.1086 -0.0010 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.5910 3.4280 -0.0004 32 1 7.5235 3.2280 1.6613 33 1 6.7339 4.8384 1.9513 34 1 7.0550 6.6333 0.2366 35 1 10.7273 9.2195 -1.0563 36 1 10.5635 12.1436 -0.5949 37 1 9.3915 11.7977 -3.2285 38 1 8.0051 13.3804 0.4190 39 1 9.0924 14.6576 -1.3429 40 1 7.0087 11.2534 -0.4579 41 1 6.7109 8.7597 -0.0109 42 1 7.3954 4.4946 -1.8045 43 1 7.9897 2.9858 -0.9851 44 1 7.3828 1.4794 -0.0129 45 1 6.2711 -0.7153 -0.0024 46 1 3.8160 -0.8557 -0.0003 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15508394_10543058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:10:54 Heat of formation + Delta-G solvation = -48.688121 kcal Electronic energy + Delta-G solvation = -29907.073791 eV Core-core repulsion = 25537.075228 eV Total energy + Delta-G solvation = -4369.998563 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.51288 -41.80540 -41.24041 -40.01689 -38.69918 -37.63327 -37.57355 -34.82444 -32.67436 -32.35010 -32.03857 -30.63053 -28.73662 -26.89160 -26.73255 -26.05445 -25.18699 -24.12155 -22.89357 -21.98288 -21.30833 -20.81240 -20.38391 -19.82586 -18.80378 -18.27434 -17.50846 -17.47621 -17.29075 -17.06079 -16.78378 -16.47049 -16.18825 -16.03281 -15.77873 -15.57694 -15.07189 -14.90329 -14.74486 -14.63556 -14.57640 -14.42304 -14.32338 -14.02795 -13.93299 -13.51468 -13.47846 -13.15777 -13.14034 -12.87268 -12.70256 -12.26747 -11.97478 -11.90614 -11.87976 -11.81380 -11.73968 -11.35418 -11.26158 -10.33291 -10.27533 -10.07979 -9.95728 -9.75896 -9.29148 -4.93281 -0.39212 0.29432 0.35005 1.40268 1.41869 1.52300 1.61201 1.73693 1.89976 2.09406 2.13261 2.23432 2.67629 3.40304 3.58960 3.60745 3.65263 3.69436 3.79216 3.86755 3.94439 3.98653 4.11442 4.12391 4.17353 4.22456 4.26833 4.27470 4.36661 4.40340 4.60521 4.63899 4.66270 4.73894 4.77015 4.80408 4.90433 4.92866 4.96680 5.00451 5.03095 5.09673 5.17071 5.25241 5.39437 5.41773 5.57157 5.59987 5.72913 5.83057 6.33557 6.51511 6.55805 6.91051 7.04076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.506 3.494 4 O -0.539 6.539 5 C -0.147 4.147 6 C -0.061 4.061 7 C -0.083 4.083 8 C -0.066 4.066 9 H 0.109 0.891 10 C -0.123 4.123 11 C 0.113 3.887 12 H 0.090 0.910 13 N -0.698 5.698 14 C 0.591 3.409 15 O -0.574 6.574 16 C -0.070 4.070 17 C -0.105 4.105 18 C -0.229 4.229 19 C -0.052 4.052 20 O -0.566 6.566 21 Si 0.802 3.198 22 C 0.061 3.939 23 N -0.515 5.515 24 C -0.141 4.141 25 C -0.078 4.078 26 C -0.128 4.128 27 C -0.068 4.068 28 H 0.062 0.938 29 H 0.133 0.867 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.393 0.607 38 H -0.275 1.275 39 H -0.310 1.310 40 H 0.217 0.783 41 H 0.437 0.563 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.152 0.848 45 H 0.157 0.843 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -2.296 0.982 7.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.431 6.431 5 C -0.148 4.148 6 C -0.079 4.079 7 C -0.083 4.083 8 C -0.084 4.084 9 H 0.127 0.873 10 C -0.161 4.161 11 C 0.008 3.992 12 H 0.108 0.892 13 N -0.349 5.349 14 C 0.380 3.620 15 O -0.453 6.453 16 C -0.183 4.183 17 C -0.132 4.132 18 C -0.235 4.235 19 C -0.161 4.161 20 O -0.374 6.374 21 Si 0.706 3.294 22 C -0.077 4.077 23 N -0.112 5.112 24 C -0.179 4.179 25 C -0.095 4.095 26 C -0.146 4.146 27 C -0.086 4.086 28 H 0.081 0.919 29 H 0.151 0.849 30 H 0.081 0.919 31 H 0.150 0.850 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.248 0.752 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.243 0.757 38 H -0.201 1.201 39 H -0.239 1.239 40 H 0.233 0.767 41 H 0.279 0.721 42 H 0.086 0.914 43 H 0.123 0.877 44 H 0.170 0.830 45 H 0.174 0.826 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -6.198 -1.704 1.597 6.624 hybrid contribution -0.250 -0.308 0.304 0.500 sum -6.448 -2.013 1.901 7.017 Atomic orbital electron populations 1.23581 0.74295 1.05924 1.02613 1.86532 1.25210 1.31907 1.83779 1.21631 0.89912 0.81404 0.71769 1.90817 1.67646 1.37009 1.47619 1.19186 0.88230 0.96118 1.11295 1.21216 0.94686 0.96418 0.95581 1.19730 0.92044 0.95968 1.00575 1.21602 0.95325 0.94031 0.97476 0.87267 1.23411 0.94815 1.01955 0.95952 1.21911 1.00481 0.79106 0.97698 0.89196 1.45388 1.12385 1.07671 1.69439 1.17227 0.84188 0.84573 0.75968 1.90852 1.25849 1.75627 1.52994 1.20107 0.88321 0.91711 1.18193 1.21227 0.98604 0.92213 1.01146 1.19954 0.94955 0.95678 1.12931 1.24731 1.05286 1.01000 0.85115 1.86455 1.39882 1.95490 1.15548 0.93946 0.81898 0.72607 0.80901 1.22393 0.97510 0.85962 1.01823 1.41862 1.10187 1.07236 1.51953 1.23587 0.95471 1.01211 0.97639 1.21660 1.01621 0.91526 0.94713 1.21497 0.93943 0.99259 0.99885 1.21668 0.94665 0.97796 0.94473 0.91905 0.84856 0.91875 0.85034 0.87388 0.89452 0.75203 0.85910 0.89158 0.75693 1.20123 1.23852 0.76669 0.72146 0.91369 0.87662 0.83025 0.82568 0.83597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -1.35 9.82 -56.22 -0.55 -1.90 16 3 C 0.51 3.43 7.90 70.33 0.56 3.99 16 4 O -0.54 -6.48 16.14 19.92 0.32 -6.16 16 5 C -0.15 -0.42 5.87 -20.10 -0.12 -0.54 16 6 C -0.06 -0.05 9.25 22.54 0.21 0.16 16 7 C -0.08 0.29 5.28 -19.90 -0.11 0.18 16 8 C -0.07 0.45 3.85 -11.01 -0.04 0.41 16 9 H 0.11 -0.95 8.09 -2.39 -0.02 -0.97 16 10 C -0.12 0.94 7.29 31.12 0.23 1.16 16 11 C 0.11 -0.38 4.32 45.51 0.20 -0.18 16 12 H 0.09 0.12 7.46 -2.39 -0.02 0.10 16 13 N -0.70 2.37 5.26 -443.99 -2.33 0.03 16 14 C 0.59 2.97 7.79 86.45 0.67 3.64 16 15 O -0.57 -8.50 16.48 -4.35 -0.07 -8.57 16 16 C -0.07 -0.16 7.06 40.35 0.28 0.13 16 17 C -0.10 -0.66 10.59 22.57 0.24 -0.42 16 18 C -0.23 -0.09 5.43 -20.12 -0.11 -0.20 16 19 C -0.05 -0.04 3.02 71.24 0.22 0.18 16 20 O -0.57 -1.66 12.88 -148.98 -1.92 -3.58 16 21 Si 0.80 -3.54 30.60 68.60 2.10 -1.44 16 22 C 0.06 -0.41 10.45 83.48 0.87 0.46 16 23 N -0.51 3.59 5.99 -183.61 -1.10 2.49 16 24 C -0.14 0.69 7.25 31.12 0.23 0.91 16 25 C -0.08 0.40 8.62 22.33 0.19 0.59 16 26 C -0.13 0.59 10.03 22.23 0.22 0.81 16 27 C -0.07 0.08 9.62 22.53 0.22 0.30 16 28 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 29 H 0.13 -0.98 8.14 -2.39 -0.02 -1.00 16 30 H 0.06 -0.05 8.14 -2.39 -0.02 -0.06 16 31 H 0.13 0.12 7.64 -2.91 -0.02 0.10 16 32 H 0.11 -0.91 7.73 -2.38 -0.02 -0.93 16 33 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 34 H 0.41 -4.26 7.83 -92.71 -0.73 -4.99 16 35 H 0.12 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.09 0.35 7.96 -2.39 -0.02 0.33 16 37 H 0.39 -2.33 8.70 -74.06 -0.64 -2.97 16 38 H -0.27 0.38 7.11 99.48 0.71 1.09 16 39 H -0.31 -1.46 7.11 99.48 0.71 -0.75 16 40 H 0.22 -3.25 6.21 -2.91 -0.02 -3.27 16 41 H 0.44 -6.46 8.19 -92.70 -0.76 -7.22 16 42 H 0.07 -0.17 8.14 -2.38 -0.02 -0.19 16 43 H 0.11 -0.66 6.29 -2.39 -0.02 -0.68 16 44 H 0.15 -1.42 6.63 -2.91 -0.02 -1.44 16 45 H 0.16 -1.45 8.06 -2.91 -0.02 -1.47 16 46 H 0.15 -0.49 7.61 -2.91 -0.02 -0.52 16 Total: 0.00 -31.34 392.72 0.56 -30.78 By element: Atomic # 1 Polarization: -23.36 SS G_CDS: -1.03 Total: -24.39 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.15 Total: 12.74 kcal Atomic # 7 Polarization: 5.96 SS G_CDS: -3.44 Total: 2.52 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -2.22 Total: -20.21 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: 2.10 Total: -1.44 kcal Total: -31.34 0.56 -30.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15508394_10543058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.912 kcal (2) G-P(sol) polarization free energy of solvation -31.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds