Wall clock time and date at job start Sun Mar 7 2021 05:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34715 * 116.99739 * 2 1 4 4 O 1.21464 * 120.00140 * 0.02562 * 3 2 1 5 5 C 1.47729 * 119.99469 * 180.02562 * 3 2 1 6 6 C 1.39611 * 120.14456 * 180.02562 * 5 3 2 7 7 C 1.37969 * 119.84417 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.92268 * 179.97438 * 7 6 5 9 9 H 1.09002 * 112.85178 * 9.66215 * 8 7 6 10 10 C 1.53785 * 113.69000 * 140.93373 * 8 7 6 11 11 C 1.53779 * 87.08093 * 139.98979 * 10 8 7 12 12 H 1.08999 * 113.68761 * 220.00455 * 11 10 8 13 13 N 1.46504 * 113.61484 * 89.11287 * 11 10 8 14 14 C 1.34781 * 119.99665 * 107.49929 * 13 11 10 15 15 O 1.21641 * 119.99909 * 0.02562 * 14 13 11 16 16 C 1.47187 * 119.99783 * 179.97438 * 14 13 11 17 17 C 1.36013 * 123.46171 * 359.71499 * 16 14 13 18 18 S 1.70447 * 110.81698 * 179.85551 * 17 16 14 19 19 C 1.75510 * 92.44463 * 0.34171 * 18 17 16 20 20 C 1.50701 * 124.71213 * 179.80334 * 19 18 17 21 21 O 1.42895 * 109.47175 * 120.00201 * 20 19 18 22 22 Si 1.86304 * 109.47110 * 359.97438 * 20 19 18 23 23 C 1.32771 * 110.57325 * 359.80670 * 19 18 17 24 24 C 1.53781 * 113.61206 * 238.46909 * 8 7 6 25 25 C 1.38340 * 120.15121 * 0.24489 * 7 6 5 26 26 C 1.38396 * 120.30147 * 359.49377 * 25 7 6 27 27 C 1.37921 * 120.14956 * 0.50688 * 26 25 7 28 28 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46863 * 299.99694 * 1 2 3 30 30 H 1.09009 * 109.47311 * 59.99609 * 1 2 3 31 31 H 1.08003 * 120.08110 * 359.97438 * 6 5 3 32 32 H 1.09003 * 113.60734 * 254.54099 * 10 8 7 33 33 H 1.08996 * 113.61146 * 25.43597 * 10 8 7 34 34 H 0.96996 * 119.99953 * 287.50554 * 13 11 10 35 35 H 1.08000 * 124.59094 * 359.97438 * 17 16 14 36 36 H 1.09005 * 109.47003 * 240.00147 * 20 19 18 37 37 H 0.96697 * 113.99909 * 180.02562 * 21 20 19 38 38 H 1.48503 * 109.99868 * 298.68328 * 22 20 19 39 39 H 1.48498 * 109.99733 * 59.99885 * 22 20 19 40 40 H 1.07998 * 123.45600 * 180.02562 * 23 19 18 41 41 H 1.09005 * 113.61302 * 334.48043 * 24 8 7 42 42 H 1.08993 * 113.62030 * 105.38889 * 24 8 7 43 43 H 1.07998 * 119.84894 * 179.74665 * 25 7 6 44 44 H 1.07998 * 119.92291 * 180.25746 * 26 25 7 45 45 H 1.08000 * 120.07423 * 179.72188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1758 2.5199 0.0000 7 6 5.5540 2.5848 -0.0011 8 6 6.2434 3.9249 -0.0011 9 1 5.5567 4.7542 0.1684 10 6 7.4991 3.9737 0.8854 11 6 8.1541 4.8127 -0.2245 12 1 9.1992 4.5608 -0.4048 13 7 7.9332 6.2536 -0.0788 14 6 8.9463 7.0552 0.3055 15 8 10.0441 6.5823 0.5309 16 6 8.7245 8.5030 0.4514 17 6 7.5294 9.1065 0.2116 18 16 7.6335 10.7859 0.4835 19 6 9.3299 10.6856 0.9225 20 6 10.1851 11.8619 1.3176 21 8 10.6843 11.6644 2.6419 22 14 9.1629 13.4186 1.2643 23 6 9.7550 9.4295 0.8580 24 6 7.1795 4.1360 -1.2028 25 6 6.3043 1.4226 -0.0078 26 6 5.6793 0.1879 -0.0030 27 6 4.3024 0.1084 -0.0019 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.5912 3.4280 0.0004 32 1 7.3543 4.5196 1.8177 33 1 7.9682 3.0008 1.0319 34 1 7.0578 6.6307 -0.2588 35 1 6.6350 8.5911 -0.1060 36 1 11.0210 11.9526 0.6239 37 1 11.2440 12.3847 2.9627 38 1 8.6647 13.6520 -0.1151 39 1 8.0195 13.3078 2.2053 40 1 10.7675 9.1311 1.0866 41 1 7.5614 3.2074 -1.6272 42 1 6.7770 4.8128 -1.9563 43 1 7.3828 1.4791 -0.0128 44 1 6.2711 -0.7155 -0.0040 45 1 3.8159 -0.8558 -0.0026 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15508394_6894386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:16:38 Heat of formation + Delta-G solvation = -59.129596 kcal Electronic energy + Delta-G solvation = -29626.153614 eV Core-core repulsion = 25282.054292 eV Total energy + Delta-G solvation = -4344.099322 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.107 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86125 -41.35380 -40.38049 -39.07936 -38.42306 -37.38709 -37.12513 -34.70841 -32.52801 -32.32027 -31.53743 -28.74444 -27.01290 -26.85930 -26.75554 -25.48970 -24.87604 -22.96052 -22.19857 -21.80040 -20.51264 -20.30265 -18.83058 -18.69202 -18.40120 -18.18094 -18.04728 -17.32740 -17.12040 -16.96703 -16.36947 -16.21104 -16.14925 -15.78069 -15.64448 -15.14663 -14.92602 -14.64925 -14.61151 -14.42363 -14.31996 -14.11318 -13.92091 -13.83262 -13.68891 -13.59503 -13.17554 -13.13253 -12.96406 -12.74058 -12.67112 -12.29223 -12.10516 -11.95106 -11.85460 -11.79049 -11.63592 -11.30949 -10.93168 -10.54088 -10.18018 -10.10520 -9.96421 -9.81775 -9.53138 -5.32550 -0.39292 -0.36859 0.23384 0.33671 0.69250 0.88349 1.12437 1.49844 1.51136 1.66582 1.81184 2.01716 2.33075 2.64850 3.24678 3.30190 3.49943 3.56497 3.60693 3.63300 3.74562 3.80698 3.83815 3.95381 3.99781 4.02906 4.14674 4.19541 4.23598 4.24110 4.32150 4.33692 4.52997 4.55230 4.58790 4.68960 4.69235 4.73391 4.82168 4.87776 4.90934 4.98023 5.04876 5.19965 5.20265 5.22455 5.35608 5.42826 5.53544 5.74213 6.40590 6.50453 6.72300 7.18074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.508 3.492 4 O -0.505 6.505 5 C -0.125 4.125 6 C -0.050 4.050 7 C -0.082 4.082 8 C -0.074 4.074 9 H 0.099 0.901 10 C -0.144 4.144 11 C 0.121 3.879 12 H 0.109 0.891 13 N -0.710 5.710 14 C 0.583 3.417 15 O -0.528 6.528 16 C -0.155 4.155 17 C -0.203 4.203 18 S 0.176 5.824 19 C -0.198 4.198 20 C -0.034 4.034 21 O -0.542 6.542 22 Si 0.670 3.330 23 C -0.048 4.048 24 C -0.136 4.136 25 C -0.079 4.079 26 C -0.128 4.128 27 C -0.065 4.065 28 H 0.105 0.895 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.136 0.864 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.399 0.601 35 H 0.172 0.828 36 H 0.085 0.915 37 H 0.385 0.615 38 H -0.237 1.237 39 H -0.234 1.234 40 H 0.159 0.841 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.270 1.710 -1.292 2.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.353 3.647 4 O -0.394 6.394 5 C -0.126 4.126 6 C -0.069 4.069 7 C -0.082 4.082 8 C -0.092 4.092 9 H 0.117 0.883 10 C -0.182 4.182 11 C 0.015 3.985 12 H 0.127 0.873 13 N -0.361 5.361 14 C 0.369 3.631 15 O -0.405 6.405 16 C -0.173 4.173 17 C -0.341 4.341 18 S 0.442 5.558 19 C -0.315 4.315 20 C -0.147 4.147 21 O -0.349 6.349 22 Si 0.569 3.431 23 C -0.077 4.077 24 C -0.174 4.174 25 C -0.097 4.097 26 C -0.146 4.146 27 C -0.083 4.083 28 H 0.123 0.877 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.154 0.846 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.234 0.766 35 H 0.189 0.811 36 H 0.103 0.897 37 H 0.233 0.767 38 H -0.161 1.161 39 H -0.158 1.158 40 H 0.176 0.824 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.355 2.646 -1.466 3.315 hybrid contribution 0.221 -1.589 -0.125 1.610 sum -1.134 1.057 -1.591 2.221 Atomic orbital electron populations 1.23341 0.75443 1.04114 1.02846 1.86535 1.23970 1.32459 1.84187 1.21238 0.89168 0.81578 0.72730 1.90849 1.66813 1.36055 1.45654 1.19085 0.88990 0.95054 1.09495 1.21155 0.93967 0.96784 0.94958 1.19610 0.92654 0.95062 1.00908 1.21621 0.95654 0.94333 0.97641 0.88250 1.23587 0.95279 1.01168 0.98185 1.21855 1.00931 0.79302 0.96367 0.87301 1.45505 1.13424 1.07175 1.70033 1.17558 0.84117 0.85063 0.76341 1.90824 1.23976 1.76103 1.49549 1.20217 0.93671 0.94334 1.09118 1.25802 1.01808 1.00522 1.05918 1.83194 1.05971 1.03270 1.63332 1.23437 0.97586 0.98214 1.12214 1.23990 1.01169 1.02133 0.87436 1.86519 1.70692 1.49192 1.28505 0.94707 0.82385 0.82873 0.83125 1.21026 1.00362 0.89781 0.96544 1.23456 0.95918 1.01701 0.96288 1.21345 1.00547 0.91807 0.96009 1.21198 0.94330 0.98187 1.00878 1.21507 0.94035 0.97987 0.94757 0.87658 0.91627 0.91635 0.84589 0.90455 0.88431 0.76555 0.81056 0.89697 0.76661 1.16121 1.15773 0.82356 0.88084 0.90312 0.85027 0.84775 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.01 10.56 101.05 1.07 1.06 16 2 O -0.36 -0.74 9.82 -40.53 -0.40 -1.14 16 3 C 0.51 1.75 7.90 34.61 0.27 2.02 16 4 O -0.50 -2.97 16.14 -19.24 -0.31 -3.28 16 5 C -0.13 -0.23 5.87 -104.98 -0.62 -0.85 16 6 C -0.05 -0.05 9.25 -39.17 -0.36 -0.42 16 7 C -0.08 0.04 5.29 -104.68 -0.55 -0.51 16 8 C -0.07 0.14 3.85 -90.96 -0.35 -0.21 16 9 H 0.10 -0.23 8.08 -51.93 -0.42 -0.65 16 10 C -0.14 0.17 7.26 -25.92 -0.19 -0.02 16 11 C 0.12 -0.07 4.32 -67.11 -0.29 -0.36 16 12 H 0.11 0.10 7.46 -51.93 -0.39 -0.29 16 13 N -0.71 0.09 5.23 -54.16 -0.28 -0.19 16 14 C 0.58 1.87 7.79 -12.62 -0.10 1.77 16 15 O -0.53 -3.64 16.40 5.24 0.09 -3.55 16 16 C -0.16 -0.37 5.98 -104.63 -0.63 -0.99 16 17 C -0.20 -0.02 10.38 29.93 0.31 0.29 16 18 S 0.18 0.16 20.18 -107.50 -2.17 -2.01 16 19 C -0.20 -0.40 5.72 -36.18 -0.21 -0.60 16 20 C -0.03 0.01 2.94 36.01 0.11 0.12 16 21 O -0.54 -0.03 12.83 -35.23 -0.45 -0.49 16 22 Si 0.67 -1.11 30.91 -169.99 -5.25 -6.37 16 23 C -0.05 -0.15 9.91 -39.02 -0.39 -0.54 16 24 C -0.14 0.31 7.29 -25.92 -0.19 0.12 16 25 C -0.08 0.10 8.53 -39.49 -0.34 -0.24 16 26 C -0.13 0.14 10.03 -39.64 -0.40 -0.26 16 27 C -0.06 -0.01 9.62 -39.17 -0.38 -0.38 16 28 H 0.11 -0.31 8.14 -51.93 -0.42 -0.73 16 29 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 30 H 0.06 -0.02 8.14 -51.92 -0.42 -0.44 16 31 H 0.14 0.14 7.64 -52.48 -0.40 -0.27 16 32 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 33 H 0.10 -0.19 6.41 -51.93 -0.33 -0.52 16 34 H 0.40 -1.05 7.20 -40.82 -0.29 -1.34 16 35 H 0.17 -0.54 7.01 -52.49 -0.37 -0.90 16 36 H 0.09 -0.18 7.96 -51.93 -0.41 -0.59 16 37 H 0.39 -1.99 8.74 45.56 0.40 -1.59 16 38 H -0.24 -0.06 7.11 56.52 0.40 0.34 16 39 H -0.23 -0.29 7.11 56.52 0.40 0.11 16 40 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.10 -0.28 7.61 -51.93 -0.40 -0.68 16 42 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 43 H 0.13 -0.40 6.71 -52.49 -0.35 -0.75 16 44 H 0.13 -0.42 8.06 -52.49 -0.42 -0.84 16 45 H 0.14 -0.15 7.61 -52.49 -0.40 -0.55 16 LS Contribution 397.44 15.07 5.99 5.99 Total: 0.00 -10.57 397.44 -11.53 -22.10 By element: Atomic # 1 Polarization: -5.53 SS G_CDS: -5.52 Total: -11.05 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: -3.22 Total: -0.01 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: -0.28 Total: -0.19 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.07 Total: -8.46 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.25 Total: -6.37 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.17 Total: -2.01 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -10.57 -11.53 -22.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15508394_6894386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.026 kcal (2) G-P(sol) polarization free energy of solvation -10.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds