Wall clock time and date at job start Sun Mar 7 2021 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34715 * 116.99739 * 2 1 4 4 O 1.21464 * 120.00140 * 0.02562 * 3 2 1 5 5 C 1.47729 * 119.99469 * 180.02562 * 3 2 1 6 6 C 1.39611 * 120.14456 * 180.02562 * 5 3 2 7 7 C 1.37969 * 119.84417 * 180.02562 * 6 5 3 8 8 C 1.50701 * 119.92268 * 179.97438 * 7 6 5 9 9 H 1.09002 * 112.85178 * 9.66215 * 8 7 6 10 10 C 1.53785 * 113.69000 * 140.93373 * 8 7 6 11 11 C 1.53779 * 87.08093 * 139.98979 * 10 8 7 12 12 H 1.08999 * 113.68761 * 220.00455 * 11 10 8 13 13 N 1.46504 * 113.61484 * 89.11287 * 11 10 8 14 14 C 1.34781 * 119.99665 * 107.49929 * 13 11 10 15 15 O 1.21641 * 119.99909 * 0.02562 * 14 13 11 16 16 C 1.47187 * 119.99783 * 179.97438 * 14 13 11 17 17 C 1.36013 * 123.46171 * 359.71499 * 16 14 13 18 18 S 1.70447 * 110.81698 * 179.85551 * 17 16 14 19 19 C 1.75510 * 92.44463 * 0.34171 * 18 17 16 20 20 C 1.50701 * 124.71213 * 179.80334 * 19 18 17 21 21 O 1.42895 * 109.47175 * 120.00201 * 20 19 18 22 22 Si 1.86304 * 109.47110 * 359.97438 * 20 19 18 23 23 C 1.32771 * 110.57325 * 359.80670 * 19 18 17 24 24 C 1.53781 * 113.61206 * 238.46909 * 8 7 6 25 25 C 1.38340 * 120.15121 * 0.24489 * 7 6 5 26 26 C 1.38396 * 120.30147 * 359.49377 * 25 7 6 27 27 C 1.37921 * 120.14956 * 0.50688 * 26 25 7 28 28 H 1.08999 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46863 * 299.99694 * 1 2 3 30 30 H 1.09009 * 109.47311 * 59.99609 * 1 2 3 31 31 H 1.08003 * 120.08110 * 359.97438 * 6 5 3 32 32 H 1.09003 * 113.60734 * 254.54099 * 10 8 7 33 33 H 1.08996 * 113.61146 * 25.43597 * 10 8 7 34 34 H 0.96996 * 119.99953 * 287.50554 * 13 11 10 35 35 H 1.08000 * 124.59094 * 359.97438 * 17 16 14 36 36 H 1.09005 * 109.47003 * 240.00147 * 20 19 18 37 37 H 0.96697 * 113.99909 * 180.02562 * 21 20 19 38 38 H 1.48503 * 109.99868 * 298.68328 * 22 20 19 39 39 H 1.48498 * 109.99733 * 59.99885 * 22 20 19 40 40 H 1.07998 * 123.45600 * 180.02562 * 23 19 18 41 41 H 1.09005 * 113.61302 * 334.48043 * 24 8 7 42 42 H 1.08993 * 113.62030 * 105.38889 * 24 8 7 43 43 H 1.07998 * 119.84894 * 179.74665 * 25 7 6 44 44 H 1.07998 * 119.92291 * 180.25746 * 26 25 7 45 45 H 1.08000 * 120.07423 * 179.72188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5388 1.2776 -0.0006 6 6 4.1758 2.5199 0.0000 7 6 5.5540 2.5848 -0.0011 8 6 6.2434 3.9249 -0.0011 9 1 5.5567 4.7542 0.1684 10 6 7.4991 3.9737 0.8854 11 6 8.1541 4.8127 -0.2245 12 1 9.1992 4.5608 -0.4048 13 7 7.9332 6.2536 -0.0788 14 6 8.9463 7.0552 0.3055 15 8 10.0441 6.5823 0.5309 16 6 8.7245 8.5030 0.4514 17 6 7.5294 9.1065 0.2116 18 16 7.6335 10.7859 0.4835 19 6 9.3299 10.6856 0.9225 20 6 10.1851 11.8619 1.3176 21 8 10.6843 11.6644 2.6419 22 14 9.1629 13.4186 1.2643 23 6 9.7550 9.4295 0.8580 24 6 7.1795 4.1360 -1.2028 25 6 6.3043 1.4226 -0.0078 26 6 5.6793 0.1879 -0.0030 27 6 4.3024 0.1084 -0.0019 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 3.5912 3.4280 0.0004 32 1 7.3543 4.5196 1.8177 33 1 7.9682 3.0008 1.0319 34 1 7.0578 6.6307 -0.2588 35 1 6.6350 8.5911 -0.1060 36 1 11.0210 11.9526 0.6239 37 1 11.2440 12.3847 2.9627 38 1 8.6647 13.6520 -0.1151 39 1 8.0195 13.3078 2.2053 40 1 10.7675 9.1311 1.0866 41 1 7.5614 3.2074 -1.6272 42 1 6.7770 4.8128 -1.9563 43 1 7.3828 1.4791 -0.0128 44 1 6.2711 -0.7155 -0.0040 45 1 3.8159 -0.8558 -0.0026 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15508394_6894386.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:16:37 Heat of formation + Delta-G solvation = -57.961439 kcal Electronic energy + Delta-G solvation = -29626.102959 eV Core-core repulsion = 25282.054292 eV Total energy + Delta-G solvation = -4344.048667 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.107 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.90683 -41.49999 -40.46970 -39.08146 -38.47628 -37.59384 -37.18675 -34.81616 -32.54989 -32.29499 -31.55927 -28.75545 -27.04334 -26.78887 -26.73130 -25.51104 -24.92520 -22.91933 -22.27192 -21.90227 -20.62044 -20.31585 -18.87332 -18.69938 -18.39751 -18.31876 -18.15742 -17.49551 -17.09667 -16.96744 -16.38082 -16.27834 -16.18133 -15.83239 -15.70556 -15.14800 -14.91442 -14.68606 -14.65506 -14.41873 -14.34404 -14.14487 -13.95668 -13.92463 -13.76994 -13.50010 -13.17385 -13.14457 -12.89855 -12.72665 -12.69141 -12.39226 -12.12480 -11.92475 -11.87705 -11.83038 -11.75476 -11.27959 -11.17186 -10.51610 -10.25775 -10.09426 -10.01410 -9.77520 -9.62578 -5.20800 -0.47581 -0.40837 0.25828 0.28169 0.60385 0.72429 1.18843 1.38550 1.58756 1.59237 1.87710 1.97266 2.15111 2.66104 3.31564 3.39062 3.57576 3.59112 3.64267 3.67843 3.78923 3.85371 3.92038 3.94123 4.10178 4.11046 4.16434 4.20916 4.25052 4.25985 4.38817 4.41452 4.59242 4.60630 4.62336 4.72862 4.75109 4.80101 4.89583 4.92650 4.95076 4.98850 5.05803 5.09374 5.15348 5.23775 5.37810 5.42698 5.58001 5.81704 6.36211 6.53988 6.83403 7.04896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.506 3.494 4 O -0.540 6.540 5 C -0.147 4.147 6 C -0.063 4.063 7 C -0.083 4.083 8 C -0.068 4.068 9 H 0.105 0.895 10 C -0.140 4.140 11 C 0.113 3.887 12 H 0.092 0.908 13 N -0.695 5.695 14 C 0.582 3.418 15 O -0.576 6.576 16 C -0.178 4.178 17 C -0.184 4.184 18 S 0.183 5.817 19 C -0.211 4.211 20 C -0.049 4.049 21 O -0.564 6.564 22 Si 0.758 3.242 23 C -0.070 4.070 24 C -0.122 4.122 25 C -0.076 4.076 26 C -0.127 4.127 27 C -0.067 4.067 28 H 0.134 0.866 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.413 0.587 35 H 0.205 0.795 36 H 0.102 0.898 37 H 0.406 0.594 38 H -0.261 1.261 39 H -0.274 1.274 40 H 0.144 0.856 41 H 0.111 0.889 42 H 0.086 0.914 43 H 0.153 0.847 44 H 0.159 0.841 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 1.389 -1.831 2.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.353 3.647 4 O -0.432 6.432 5 C -0.148 4.148 6 C -0.081 4.081 7 C -0.083 4.083 8 C -0.087 4.087 9 H 0.123 0.877 10 C -0.179 4.179 11 C 0.008 3.992 12 H 0.111 0.889 13 N -0.346 5.346 14 C 0.368 3.632 15 O -0.456 6.456 16 C -0.196 4.196 17 C -0.322 4.322 18 S 0.448 5.552 19 C -0.327 4.327 20 C -0.160 4.160 21 O -0.375 6.375 22 Si 0.660 3.340 23 C -0.099 4.099 24 C -0.160 4.160 25 C -0.094 4.094 26 C -0.145 4.145 27 C -0.085 4.085 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.083 0.917 33 H 0.125 0.875 34 H 0.250 0.750 35 H 0.222 0.778 36 H 0.120 0.880 37 H 0.258 0.742 38 H -0.186 1.186 39 H -0.200 1.200 40 H 0.161 0.839 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.171 0.829 44 H 0.176 0.824 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.445 2.307 -2.009 3.383 hybrid contribution 0.220 -1.516 0.065 1.533 sum -1.226 0.791 -1.944 2.430 Atomic orbital electron populations 1.23588 0.74293 1.05956 1.02585 1.86532 1.25208 1.31835 1.83777 1.21635 0.89918 0.81410 0.71753 1.90817 1.67661 1.37072 1.47645 1.19178 0.88236 0.96092 1.11322 1.21209 0.94736 0.96413 0.95724 1.19721 0.92026 0.95950 1.00599 1.21600 0.95387 0.94036 0.97630 0.87683 1.23587 0.95539 1.01313 0.97454 1.21930 1.00565 0.79000 0.97708 0.88949 1.45413 1.13329 1.07315 1.68549 1.17740 0.83976 0.85594 0.75860 1.90791 1.25864 1.76899 1.52067 1.20194 0.94476 0.93994 1.10921 1.26125 1.02045 1.00232 1.03770 1.83205 1.05244 1.03771 1.62959 1.23816 0.98471 0.98681 1.11753 1.24302 1.02060 1.01946 0.87738 1.86467 1.71401 1.50906 1.28688 0.93634 0.79769 0.80817 0.79799 1.21051 1.00233 0.90710 0.97873 1.23417 0.94722 1.01969 0.95922 1.21655 1.01645 0.91451 0.94659 1.21509 0.93919 0.99250 0.99788 1.21673 0.94681 0.97747 0.94426 0.84760 0.91964 0.91893 0.85313 0.91658 0.87460 0.74951 0.77786 0.88013 0.74226 1.18594 1.20009 0.83862 0.87073 0.89522 0.82904 0.82386 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.72 9.82 -56.25 -0.55 -2.27 16 3 C 0.51 4.12 7.90 70.33 0.56 4.68 16 4 O -0.54 -7.37 16.14 19.95 0.32 -7.05 16 5 C -0.15 -0.63 5.87 -20.10 -0.12 -0.75 16 6 C -0.06 -0.17 9.25 22.54 0.21 0.04 16 7 C -0.08 0.14 5.29 -19.90 -0.11 0.03 16 8 C -0.07 0.30 3.85 -11.01 -0.04 0.26 16 9 H 0.11 -0.57 8.08 -2.39 -0.02 -0.59 16 10 C -0.14 0.38 7.26 31.12 0.23 0.61 16 11 C 0.11 -0.14 4.32 45.52 0.20 0.06 16 12 H 0.09 0.25 7.46 -2.39 -0.02 0.23 16 13 N -0.69 0.09 5.23 -443.50 -2.32 -2.23 16 14 C 0.58 4.46 7.79 86.59 0.67 5.14 16 15 O -0.58 -9.29 16.40 -4.16 -0.07 -9.36 16 16 C -0.18 -1.02 5.98 -19.87 -0.12 -1.14 16 17 C -0.18 0.02 10.38 67.30 0.70 0.72 16 18 S 0.18 0.33 20.18 -56.49 -1.14 -0.81 16 19 C -0.21 -1.02 5.72 24.51 0.14 -0.88 16 20 C -0.05 0.02 2.94 71.24 0.21 0.23 16 21 O -0.56 -0.30 12.83 -148.98 -1.91 -2.21 16 22 Si 0.76 -2.65 30.91 68.60 2.12 -0.53 16 23 C -0.07 -0.55 9.91 22.67 0.22 -0.33 16 24 C -0.12 0.70 7.29 31.12 0.23 0.93 16 25 C -0.08 0.31 8.53 22.33 0.19 0.50 16 26 C -0.13 0.48 10.03 22.23 0.22 0.70 16 27 C -0.07 0.01 9.62 22.53 0.22 0.23 16 28 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 29 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.13 0.43 7.64 -2.91 -0.02 0.41 16 32 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.11 -0.51 6.41 -2.39 -0.02 -0.53 16 34 H 0.41 -2.51 7.20 -92.71 -0.67 -3.18 16 35 H 0.21 -1.64 7.01 -2.91 -0.02 -1.66 16 36 H 0.10 -0.44 7.96 -2.38 -0.02 -0.46 16 37 H 0.41 -4.26 8.74 -74.06 -0.65 -4.91 16 38 H -0.26 -0.06 7.11 99.48 0.71 0.64 16 39 H -0.27 -0.83 7.11 99.48 0.71 -0.13 16 40 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.11 -0.81 7.61 -2.38 -0.02 -0.83 16 42 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 43 H 0.15 -1.30 6.71 -2.91 -0.02 -1.32 16 44 H 0.16 -1.38 8.06 -2.91 -0.02 -1.40 16 45 H 0.15 -0.39 7.61 -2.91 -0.02 -0.41 16 Total: 0.00 -27.47 397.44 1.04 -26.44 By element: Atomic # 1 Polarization: -13.98 SS G_CDS: -0.22 Total: -14.20 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 4.80 Total: 12.23 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: -2.32 Total: -2.23 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -2.21 Total: -20.89 kcal Atomic # 14 Polarization: -2.65 SS G_CDS: 2.12 Total: -0.53 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.14 Total: -0.81 kcal Total: -27.47 1.04 -26.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15508394_6894386.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.526 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds