Wall clock time and date at job start Sun Mar 7 2021 02:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45206 * 109.47311 * 2 1 4 4 C 1.34219 * 117.00269 * 179.97438 * 3 2 1 5 5 O 1.20832 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00416 * 180.02562 * 4 3 2 7 7 H 1.09004 * 112.84492 * 311.19587 * 6 4 3 8 8 C 1.53780 * 113.69248 * 82.46324 * 6 4 3 9 9 C 1.53783 * 87.08079 * 139.99477 * 8 6 4 10 10 F 1.39898 * 113.68814 * 89.13031 * 9 8 6 11 11 C 1.52996 * 113.61387 * 220.02041 * 9 8 6 12 12 N 1.46498 * 109.47059 * 277.49720 * 11 9 8 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 9 14 14 O 1.21693 * 120.00014 * 0.28042 * 13 12 11 15 15 C 1.46682 * 120.00182 * 180.27909 * 13 12 11 16 16 C 1.37870 * 126.23378 * 179.71906 * 15 13 12 17 17 C 1.50694 * 126.45882 * 359.97438 * 16 15 13 18 18 C 1.39835 * 107.08110 * 179.84361 * 16 15 13 19 19 C 1.35445 * 107.86822 * 0.41752 * 18 16 15 20 20 C 1.50698 * 125.56676 * 179.71617 * 19 18 16 21 21 O 1.42906 * 109.47250 * 300.00165 * 20 19 18 22 22 Si 1.86304 * 109.47461 * 179.97438 * 20 19 18 23 23 N 1.35539 * 108.87278 * 359.74082 * 19 18 16 24 24 C 1.53780 * 113.61773 * 180.02562 * 6 4 3 25 25 H 1.08994 * 109.47187 * 300.00149 * 1 2 3 26 26 H 1.09002 * 109.46998 * 60.00024 * 1 2 3 27 27 H 1.08995 * 109.46921 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47461 * 240.00262 * 2 1 3 29 29 H 1.09002 * 109.46998 * 119.99976 * 2 1 3 30 30 H 1.09006 * 113.60830 * 25.44713 * 8 6 4 31 31 H 1.08992 * 113.61689 * 254.55160 * 8 6 4 32 32 H 1.09004 * 109.47066 * 157.49988 * 11 9 8 33 33 H 1.08994 * 109.46974 * 37.50135 * 11 9 8 34 34 H 0.97001 * 120.00384 * 0.02562 * 12 11 9 35 35 H 1.09006 * 109.47305 * 90.00123 * 17 16 15 36 36 H 1.09000 * 109.47322 * 209.99914 * 17 16 15 37 37 H 1.09009 * 109.47315 * 330.00407 * 17 16 15 38 38 H 1.08003 * 126.06655 * 180.15094 * 18 16 15 39 39 H 1.08998 * 109.47384 * 60.00039 * 20 19 18 40 40 H 0.96696 * 113.99574 * 299.99574 * 21 20 19 41 41 H 1.48493 * 109.99932 * 180.02562 * 22 20 19 42 42 H 1.48498 * 109.99847 * 301.32567 * 22 20 19 43 43 H 0.96995 * 125.67680 * 179.97438 * 23 19 18 44 44 H 1.09002 * 113.60970 * 105.38403 * 24 6 4 45 45 H 1.08992 * 113.69075 * 334.49945 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.4714 3.5816 -0.7547 8 6 3.9858 3.5786 1.3974 9 6 5.3562 4.1437 0.9878 10 9 5.2850 5.3939 0.3641 11 6 6.3979 4.0967 2.1074 12 7 6.2192 5.2526 2.9895 13 6 7.0267 5.4176 4.0559 14 8 7.9075 4.6093 4.2830 15 6 6.8438 6.5717 4.9427 16 6 7.5882 6.8620 6.0662 17 6 8.7382 6.0552 6.6117 18 6 7.0769 8.0479 6.6025 19 6 6.0460 8.4473 5.8200 20 6 5.2049 9.6783 6.0393 21 8 4.5620 9.5954 7.3129 22 14 3.9162 9.7969 4.6991 23 7 5.8940 7.5588 4.8078 24 6 5.4582 2.9681 0.0011 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 4.0376 2.8529 2.2091 31 1 3.2287 4.3453 1.5615 32 1 7.3980 4.1213 1.6744 33 1 6.2730 3.1786 2.6815 34 1 5.5169 5.8967 2.8087 35 1 9.6704 6.4056 6.1685 36 1 8.7837 6.1733 7.6943 37 1 8.5924 5.0031 6.3667 38 1 7.4371 8.5532 7.4865 39 1 5.8410 10.5630 6.0104 40 1 3.9787 8.8303 7.4099 41 1 3.0805 11.0071 4.9037 42 1 4.5717 9.8519 3.3677 43 1 5.2268 7.6099 4.1057 44 1 5.8894 3.2422 -0.9618 45 1 5.9141 2.0760 0.4303 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15509216_13940406.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:51:00 Heat of formation + Delta-G solvation = -130.858774 kcal Electronic energy + Delta-G solvation = -29698.468734 eV Core-core repulsion = 25212.819951 eV Total energy + Delta-G solvation = -4485.648783 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 341.152 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.95578 -42.64479 -41.83021 -40.38038 -39.17643 -37.71214 -37.55181 -35.89115 -33.67614 -32.70154 -31.73619 -29.91987 -28.36552 -27.25773 -27.03302 -25.85813 -23.82236 -22.56508 -22.08886 -21.60832 -20.83613 -20.40182 -19.84977 -18.91741 -17.95649 -17.85334 -17.62032 -17.36255 -16.98385 -16.84149 -16.58526 -16.17905 -16.00132 -15.82473 -15.38545 -15.07457 -14.94963 -14.88610 -14.58645 -14.34248 -14.16985 -14.04613 -13.90418 -13.65863 -13.60145 -13.50389 -13.44395 -12.98912 -12.97649 -12.91415 -12.59689 -12.56180 -12.49246 -12.20804 -11.92056 -11.57636 -11.56336 -11.39557 -11.14002 -10.54966 -10.39429 -9.83454 -9.20958 -5.15531 0.24657 1.02256 1.13440 1.45930 1.56472 1.57994 1.79139 1.88331 2.01976 2.21776 2.85237 2.97730 3.12751 3.26710 3.40784 3.41904 3.68890 3.76647 3.84985 3.96895 4.03584 4.12501 4.15962 4.24578 4.29311 4.31906 4.42464 4.48893 4.55280 4.56960 4.70957 4.74939 4.80879 4.82892 4.84364 4.87367 4.89505 5.04884 5.12616 5.13486 5.19637 5.35336 5.41553 5.61492 5.82789 6.22671 6.39228 6.62113 6.71521 6.98983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.473 3.527 5 O -0.536 6.536 6 C -0.107 4.107 7 H 0.149 0.851 8 C -0.126 4.126 9 C 0.091 3.909 10 F -0.186 7.186 11 C 0.114 3.886 12 N -0.718 5.718 13 C 0.592 3.408 14 O -0.557 6.557 15 C -0.063 4.063 16 C -0.088 4.088 17 C -0.090 4.090 18 C -0.191 4.191 19 C 0.031 3.969 20 C -0.047 4.047 21 O -0.546 6.546 22 Si 0.767 3.233 23 N -0.520 5.520 24 C -0.131 4.131 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.148 0.852 39 H 0.125 0.875 40 H 0.397 0.603 41 H -0.287 1.287 42 H -0.271 1.271 43 H 0.426 0.574 44 H 0.102 0.898 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 0.619 -1.453 7.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.317 3.683 5 O -0.426 6.426 6 C -0.126 4.126 7 H 0.167 0.833 8 C -0.163 4.163 9 C 0.072 3.928 10 F -0.166 7.166 11 C -0.009 4.009 12 N -0.370 5.370 13 C 0.380 3.620 14 O -0.436 6.436 15 C -0.176 4.176 16 C -0.097 4.097 17 C -0.147 4.147 18 C -0.215 4.215 19 C -0.087 4.087 20 C -0.158 4.158 21 O -0.353 6.353 22 Si 0.670 3.330 23 N -0.121 5.121 24 C -0.169 4.169 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.113 0.887 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.166 0.834 39 H 0.142 0.858 40 H 0.248 0.752 41 H -0.214 1.214 42 H -0.197 1.197 43 H 0.268 0.732 44 H 0.121 0.879 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.023 0.723 -2.032 7.347 hybrid contribution 0.264 0.340 -0.345 0.551 sum -6.759 1.064 -2.377 7.244 Atomic orbital electron populations 1.21825 0.90730 1.04222 1.03802 1.23261 0.96900 0.79306 1.02523 1.86519 1.24151 1.33476 1.83334 1.23847 0.80608 0.92676 0.71149 1.90690 1.61151 1.44121 1.46608 1.22606 0.96875 0.90417 1.02687 0.83299 1.23633 0.96199 1.01357 0.95152 1.21879 0.97350 0.80612 0.92953 1.92894 1.97182 1.42855 1.83709 1.21828 0.99178 0.90038 0.89898 1.45576 1.36090 1.28195 1.27174 1.17095 0.81169 0.83702 0.79996 1.90840 1.34464 1.45086 1.73199 1.19988 0.99801 0.95194 1.02572 1.20218 0.98239 0.96816 0.94443 1.20327 0.94525 0.99135 1.00710 1.20749 0.99337 0.98142 1.03272 1.21031 1.00921 0.95132 0.91580 1.24796 1.00571 0.94448 0.95964 1.86533 1.63960 1.52044 1.32799 0.94393 0.78249 0.86858 0.73475 1.41895 1.27324 1.19145 1.23769 1.23589 0.93865 0.98138 1.01326 0.91057 0.91298 0.88709 0.91517 0.91246 0.86916 0.86149 0.90403 0.88458 0.75396 0.91704 0.90644 0.91601 0.83428 0.85814 0.75222 1.21351 1.19698 0.73237 0.87942 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.79 10.29 71.98 0.74 1.53 16 2 C 0.05 -0.05 6.19 71.98 0.45 0.39 16 3 O -0.36 -0.29 10.22 -51.31 -0.52 -0.81 16 4 C 0.47 0.59 7.49 71.24 0.53 1.13 16 5 O -0.54 -4.17 15.65 21.95 0.34 -3.82 16 6 C -0.11 0.57 4.23 -11.01 -0.05 0.53 16 7 H 0.15 -1.24 8.14 -2.38 -0.02 -1.26 16 8 C -0.13 1.09 7.08 31.12 0.22 1.31 16 9 C 0.09 -0.56 1.67 -10.26 -0.02 -0.58 16 10 F -0.19 0.68 16.80 44.97 0.76 1.44 16 11 C 0.11 -0.36 5.37 86.38 0.46 0.10 16 12 N -0.72 1.90 5.46 -467.09 -2.55 -0.65 16 13 C 0.59 2.64 7.79 86.45 0.67 3.32 16 14 O -0.56 -6.68 14.80 -4.33 -0.06 -6.74 16 15 C -0.06 -0.19 7.06 40.35 0.28 0.10 16 16 C -0.09 -0.48 6.21 -19.57 -0.12 -0.60 16 17 C -0.09 -0.51 9.83 71.23 0.70 0.19 16 18 C -0.19 -0.51 10.64 22.01 0.23 -0.28 16 19 C 0.03 -0.05 6.12 41.34 0.25 0.20 16 20 C -0.05 0.21 2.98 71.24 0.21 0.42 16 21 O -0.55 1.78 12.87 -148.98 -1.92 -0.14 16 22 Si 0.77 -5.90 30.96 68.60 2.12 -3.77 16 23 N -0.52 1.84 5.47 -171.93 -0.94 0.90 16 24 C -0.13 0.63 6.86 31.13 0.21 0.85 16 25 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 28 H 0.07 -0.01 8.13 -2.39 -0.02 -0.03 16 29 H 0.07 -0.05 8.13 -2.39 -0.02 -0.07 16 30 H 0.11 -0.98 7.92 -2.38 -0.02 -1.00 16 31 H 0.12 -1.49 8.14 -2.39 -0.02 -1.51 16 32 H 0.08 -0.05 8.14 -2.38 -0.02 -0.07 16 33 H 0.10 -0.30 7.94 -2.39 -0.02 -0.32 16 34 H 0.41 -3.30 7.31 -92.71 -0.68 -3.98 16 35 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 36 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 37 H 0.07 0.59 6.49 -2.38 -0.02 0.57 16 38 H 0.15 0.27 8.06 -2.91 -0.02 0.25 16 39 H 0.12 -0.44 7.96 -2.39 -0.02 -0.45 16 40 H 0.40 -4.46 8.70 -74.06 -0.64 -5.10 16 41 H -0.29 -0.08 7.11 99.48 0.71 0.63 16 42 H -0.27 1.09 7.11 99.48 0.71 1.80 16 43 H 0.43 -4.23 5.98 -92.71 -0.55 -4.79 16 44 H 0.10 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.11 -0.34 7.40 -2.39 -0.02 -0.35 16 Total: 0.00 -23.47 383.55 1.22 -22.25 By element: Atomic # 1 Polarization: -16.47 SS G_CDS: -0.79 Total: -17.26 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: 4.79 Total: 8.62 kcal Atomic # 7 Polarization: 3.74 SS G_CDS: -3.49 Total: 0.25 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -2.16 Total: -11.52 kcal Atomic # 9 Polarization: 0.68 SS G_CDS: 0.76 Total: 1.44 kcal Atomic # 14 Polarization: -5.90 SS G_CDS: 2.12 Total: -3.77 kcal Total: -23.47 1.22 -22.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15509216_13940406.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.609 kcal (2) G-P(sol) polarization free energy of solvation -23.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds