Wall clock time and date at job start Sun Mar 7 2021 02:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45207 * 109.46698 * 2 1 4 4 C 1.34228 * 116.99665 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00439 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99565 * 179.97438 * 4 3 2 7 7 H 1.09000 * 112.91056 * 311.25629 * 6 4 3 8 8 C 1.53784 * 113.61203 * 82.51067 * 6 4 3 9 9 C 1.53776 * 87.08402 * 139.97721 * 8 6 4 10 10 F 1.39904 * 113.69006 * 89.12498 * 9 8 6 11 11 C 1.52996 * 113.61790 * 220.01848 * 9 8 6 12 12 N 1.46501 * 109.47220 * 277.49806 * 11 9 8 13 13 C 1.34770 * 120.00152 * 180.02562 * 12 11 9 14 14 O 1.21284 * 120.00210 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00050 * 180.02562 * 13 12 11 16 16 O 1.42901 * 109.47076 * 179.97438 * 15 13 12 17 17 C 1.35898 * 117.00043 * 179.97438 * 16 15 13 18 18 C 1.38707 * 120.05726 * 180.02562 * 17 16 15 19 19 N 1.48001 * 120.02905 * 0.02562 * 18 17 16 20 20 O 1.21800 * 120.00524 * 179.97438 * 19 18 17 21 21 O 1.21802 * 119.99919 * 359.97438 * 19 18 17 22 22 C 1.38172 * 119.94457 * 179.97438 * 18 17 16 23 23 C 1.38241 * 120.05252 * 359.97438 * 22 18 17 24 24 C 1.50704 * 119.94117 * 180.02562 * 23 22 18 25 25 O 1.42898 * 109.46921 * 299.98025 * 24 23 22 26 26 Si 1.86299 * 109.47198 * 179.97438 * 24 23 22 27 27 C 1.38288 * 120.11540 * 359.97438 * 23 22 18 28 28 C 1.38119 * 120.05366 * 0.30245 * 27 23 22 29 29 C 1.53780 * 113.61288 * 180.02562 * 6 4 3 30 30 H 1.08994 * 109.47284 * 60.00651 * 1 2 3 31 31 H 1.09009 * 109.46981 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47622 * 299.99653 * 1 2 3 33 33 H 1.08999 * 109.47622 * 240.00347 * 2 1 3 34 34 H 1.09000 * 109.47544 * 119.99673 * 2 1 3 35 35 H 1.09001 * 113.61229 * 25.43037 * 8 6 4 36 36 H 1.08994 * 113.61320 * 254.53092 * 8 6 4 37 37 H 1.09004 * 109.46937 * 157.49684 * 11 9 8 38 38 H 1.09004 * 109.46880 * 37.50111 * 11 9 8 39 39 H 0.97001 * 119.99571 * 359.97438 * 12 11 9 40 40 H 1.08996 * 109.47101 * 59.99438 * 15 13 12 41 41 H 1.08999 * 109.46731 * 299.99730 * 15 13 12 42 42 H 1.08004 * 119.97093 * 180.02562 * 22 18 17 43 43 H 1.09004 * 109.46907 * 59.97938 * 24 23 22 44 44 H 0.96699 * 114.00144 * 299.99556 * 25 24 23 45 45 H 1.48498 * 109.99687 * 58.68020 * 26 24 23 46 46 H 1.48497 * 110.00002 * 179.97438 * 26 24 23 47 47 H 1.08002 * 119.96980 * 180.02562 * 27 23 22 48 48 H 1.08004 * 120.02504 * 179.72836 * 28 27 23 49 49 H 1.08996 * 113.61797 * 105.47115 * 29 6 4 50 50 H 1.09002 * 113.69170 * 334.58024 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9205 2.9376 0.0000 7 1 3.4712 3.5823 -0.7554 8 6 3.9855 3.5778 1.3967 9 6 5.3558 4.1432 0.9876 10 9 5.2846 5.3939 0.3647 11 6 6.3975 4.0956 2.1072 12 7 6.2186 5.2509 2.9901 13 6 7.0300 5.4186 4.0531 14 8 7.9079 4.6129 4.2791 15 6 6.8456 6.6067 4.9617 16 8 7.8187 6.5623 6.0073 17 6 7.7905 7.5692 6.9195 18 6 8.7066 7.5891 7.9608 19 7 9.7166 6.5137 8.0794 20 8 10.5211 6.5319 8.9937 21 8 9.7432 5.6105 7.2627 22 6 8.6762 8.6142 8.8867 23 6 7.7341 9.6198 8.7755 24 6 7.7036 10.7370 9.7865 25 8 7.4781 10.1946 11.0891 26 14 6.3306 11.9222 9.3610 27 6 6.8203 9.6028 7.7377 28 6 6.8429 8.5772 6.8129 29 6 5.4580 2.9684 0.0001 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.0373 2.8516 2.2079 36 1 3.2283 4.3443 1.5613 37 1 7.3975 4.1206 1.6742 38 1 6.2727 3.1771 2.6807 39 1 5.5167 5.8954 2.8092 40 1 5.8458 6.5811 5.3950 41 1 6.9696 7.5253 4.3883 42 1 9.3896 8.6304 9.6974 43 1 8.6569 11.2654 9.7729 44 1 6.6459 9.7097 11.1747 45 1 5.0293 11.2071 9.3448 46 1 6.2895 13.0284 10.3508 47 1 6.0856 10.3898 7.6529 48 1 6.1262 8.5621 6.0050 49 1 5.8893 3.2430 -0.9625 50 1 5.9139 2.0760 0.4289 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15509216_4549638.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:52:08 Heat of formation + Delta-G solvation = -173.857973 kcal Electronic energy + Delta-G solvation = -38780.382632 eV Core-core repulsion = 33080.370407 eV Total energy + Delta-G solvation = -5700.012225 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 413.150 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -48.91676 -43.28779 -41.85579 -41.75474 -40.74827 -39.53265 -39.11076 -37.61989 -37.57567 -37.46107 -35.75983 -33.49040 -32.71239 -32.28130 -31.06670 -28.98546 -27.81617 -27.15022 -26.67675 -26.07262 -24.12087 -23.72265 -22.82765 -22.03891 -21.82269 -20.69622 -20.51459 -19.77164 -19.33934 -19.08541 -18.63366 -18.56398 -18.24882 -17.80975 -17.64529 -17.52636 -17.37678 -17.11979 -16.80442 -16.39156 -16.20692 -16.04429 -15.87171 -15.78428 -15.54523 -15.31696 -14.94964 -14.75426 -14.59304 -14.49169 -14.12725 -14.01369 -13.79966 -13.68076 -13.65915 -13.48617 -13.21746 -12.99165 -12.91583 -12.70189 -12.59359 -12.49946 -12.38269 -12.36200 -12.27154 -12.20806 -11.91919 -11.80663 -11.58791 -11.54836 -11.39203 -11.06269 -10.82999 -10.74831 -10.32095 -9.79386 -4.90902 -1.30797 -0.23507 0.16404 0.36023 1.01552 1.16149 1.27231 1.41811 1.58410 1.61361 2.02945 2.05852 2.24236 2.85878 2.97186 3.12073 3.14639 3.23733 3.28252 3.35659 3.42279 3.45375 3.62435 3.72463 3.77436 3.85335 3.93740 3.95601 4.00860 4.02536 4.17117 4.28778 4.30445 4.30737 4.40385 4.49234 4.55949 4.56576 4.58358 4.64990 4.75957 4.81583 4.82488 4.85052 4.88502 5.08328 5.09878 5.12283 5.19472 5.22447 5.40663 5.75226 6.34626 6.42138 6.45525 6.61320 7.07428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.358 6.358 4 C 0.472 3.528 5 O -0.537 6.537 6 C -0.107 4.107 7 H 0.152 0.848 8 C -0.125 4.125 9 C 0.098 3.902 10 F -0.182 7.182 11 C 0.114 3.886 12 N -0.707 5.707 13 C 0.510 3.490 14 O -0.563 6.563 15 C 0.025 3.975 16 O -0.292 6.292 17 C 0.194 3.806 18 C -0.105 4.105 19 N 0.035 4.965 20 O -0.205 6.205 21 O -0.173 6.173 22 C -0.004 4.004 23 C -0.147 4.147 24 C -0.091 4.091 25 O -0.551 6.551 26 Si 0.790 3.210 27 C -0.004 4.004 28 C -0.188 4.188 29 C -0.135 4.135 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.423 0.577 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.127 0.873 44 H 0.389 0.611 45 H -0.260 1.260 46 H -0.310 1.310 47 H 0.189 0.811 48 H 0.208 0.792 49 H 0.103 0.897 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 9.361 -5.786 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.316 3.684 5 O -0.427 6.427 6 C -0.126 4.126 7 H 0.169 0.831 8 C -0.162 4.162 9 C 0.079 3.921 10 F -0.162 7.162 11 C -0.010 4.010 12 N -0.363 5.363 13 C 0.296 3.704 14 O -0.440 6.440 15 C -0.052 4.052 16 O -0.202 6.202 17 C 0.145 3.855 18 C -0.190 4.190 19 N 0.544 4.456 20 O -0.412 6.412 21 O -0.387 6.387 22 C -0.023 4.023 23 C -0.149 4.149 24 C -0.198 4.198 25 O -0.359 6.359 26 Si 0.692 3.308 27 C -0.021 4.021 28 C -0.206 4.206 29 C -0.173 4.173 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.262 0.738 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.144 0.856 44 H 0.238 0.762 45 H -0.186 1.186 46 H -0.238 1.238 47 H 0.206 0.794 48 H 0.224 0.776 49 H 0.121 0.879 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.393 9.422 -5.336 17.223 hybrid contribution 0.449 -1.649 0.803 1.888 sum -12.944 7.774 -4.533 15.765 Atomic orbital electron populations 1.21825 0.90667 1.04233 1.03824 1.23258 0.96946 0.79336 1.02472 1.86521 1.24171 1.33432 1.83352 1.23912 0.80592 0.92782 0.71119 1.90693 1.61173 1.44212 1.46636 1.22628 0.96812 0.90307 1.02845 0.83087 1.23616 0.96371 1.01312 0.94944 1.21770 0.97047 0.80599 0.92702 1.92904 1.97152 1.42486 1.83676 1.21758 0.99034 0.90272 0.89984 1.45442 1.36061 1.28090 1.26685 1.20499 0.81311 0.86886 0.81706 1.90869 1.34337 1.46140 1.72694 1.23113 0.94331 0.99258 0.88467 1.86465 1.54264 1.43056 1.36422 1.18964 0.91816 0.88406 0.86358 1.20869 0.97964 0.95392 1.04807 1.43908 1.00857 1.01756 0.99042 1.94505 1.36308 1.83563 1.26788 1.94677 1.78299 1.28944 1.36812 1.20838 0.97308 0.89318 0.94819 1.20379 0.96981 0.97646 0.99880 1.25525 1.13682 0.98339 0.82269 1.86633 1.45378 1.73933 1.30001 0.94174 0.73898 0.75234 0.87472 1.21725 0.94651 0.96335 0.89433 1.21823 1.00361 0.93570 1.04879 1.23607 0.93898 0.98302 1.01491 0.91207 0.88723 0.91078 0.91520 0.91374 0.87270 0.85961 0.90778 0.89245 0.73825 0.83583 0.83583 0.83273 0.85551 0.76150 1.18593 1.23825 0.79389 0.77567 0.87879 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.78 10.29 71.98 0.74 1.53 16 2 C 0.05 -0.04 6.19 71.98 0.45 0.40 16 3 O -0.36 -0.29 10.22 -51.40 -0.53 -0.82 16 4 C 0.47 0.63 7.48 71.24 0.53 1.17 16 5 O -0.54 -4.42 15.65 21.96 0.34 -4.08 16 6 C -0.11 0.62 4.24 -11.01 -0.05 0.57 16 7 H 0.15 -1.38 8.14 -2.39 -0.02 -1.40 16 8 C -0.12 1.20 7.08 31.12 0.22 1.42 16 9 C 0.10 -0.73 1.67 -10.26 -0.02 -0.75 16 10 F -0.18 1.09 16.80 44.97 0.76 1.85 16 11 C 0.11 -0.49 5.37 86.38 0.46 -0.03 16 12 N -0.71 5.08 5.47 -463.06 -2.53 2.55 16 13 C 0.51 -0.11 7.91 87.66 0.69 0.58 16 14 O -0.56 -7.66 16.50 16.00 0.26 -7.40 16 15 C 0.03 -0.21 5.22 71.24 0.37 0.16 16 16 O -0.29 -1.01 7.68 -63.37 -0.49 -1.50 16 17 C 0.19 -0.07 6.67 22.51 0.15 0.08 16 18 C -0.10 -0.68 6.87 36.48 0.25 -0.43 16 19 N 0.03 0.57 4.45 -46.24 -0.21 0.36 16 20 O -0.20 -3.80 18.45 18.89 0.35 -3.46 16 21 O -0.17 -3.70 17.24 25.61 0.44 -3.25 16 22 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 23 C -0.15 0.94 5.39 -19.85 -0.11 0.83 16 24 C -0.09 0.62 2.82 71.24 0.20 0.82 16 25 O -0.55 0.95 12.77 -148.98 -1.90 -0.95 16 26 Si 0.79 -8.32 29.78 68.60 2.04 -6.28 16 27 C 0.00 0.05 8.66 22.25 0.19 0.25 16 28 C -0.19 2.23 9.04 22.37 0.20 2.43 16 29 C -0.13 0.69 6.86 31.13 0.21 0.90 16 30 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 31 H 0.09 -0.73 8.14 -2.38 -0.02 -0.75 16 32 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 33 H 0.07 0.00 8.13 -2.39 -0.02 -0.01 16 34 H 0.07 -0.02 8.13 -2.39 -0.02 -0.04 16 35 H 0.11 -0.98 7.91 -2.39 -0.02 -1.00 16 36 H 0.12 -1.66 8.14 -2.39 -0.02 -1.68 16 37 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.09 -0.25 7.94 -2.38 -0.02 -0.27 16 39 H 0.42 -6.22 8.19 -92.71 -0.76 -6.98 16 40 H 0.15 -2.57 7.65 -2.39 -0.02 -2.59 16 41 H 0.15 -2.52 7.67 -2.39 -0.02 -2.53 16 42 H 0.15 0.53 7.61 -2.91 -0.02 0.50 16 43 H 0.13 -0.91 7.96 -2.38 -0.02 -0.93 16 44 H 0.39 -3.15 8.70 -74.06 -0.64 -3.80 16 45 H -0.26 2.47 7.11 99.48 0.71 3.17 16 46 H -0.31 0.10 7.11 99.48 0.71 0.81 16 47 H 0.19 -3.80 4.87 -2.91 -0.01 -3.82 16 48 H 0.21 -4.56 6.30 -2.91 -0.02 -4.58 16 49 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 50 H 0.11 -0.27 7.40 -2.39 -0.02 -0.28 16 Total: 0.00 -43.46 435.55 2.92 -40.54 By element: Atomic # 1 Polarization: -27.36 SS G_CDS: -0.33 Total: -27.69 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.71 Total: 10.12 kcal Atomic # 7 Polarization: 5.65 SS G_CDS: -2.74 Total: 2.91 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.52 Total: -21.45 kcal Atomic # 9 Polarization: 1.09 SS G_CDS: 0.76 Total: 1.85 kcal Atomic # 14 Polarization: -8.32 SS G_CDS: 2.04 Total: -6.28 kcal Total: -43.46 2.92 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15509216_4549638.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.321 kcal (2) G-P(sol) polarization free energy of solvation -43.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds