Wall clock time and date at job start Sun Mar 7 2021 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45201 * 109.47236 * 2 1 4 4 C 1.34229 * 117.00149 * 179.97438 * 3 2 1 5 5 O 1.20819 * 119.99983 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99868 * 179.97438 * 4 3 2 7 7 H 1.08997 * 112.85128 * 311.20145 * 6 4 3 8 8 C 1.53782 * 113.68822 * 82.47096 * 6 4 3 9 9 C 1.53782 * 87.08223 * 139.99103 * 8 6 4 10 10 F 1.39903 * 113.69115 * 89.12619 * 9 8 6 11 11 C 1.52997 * 113.61201 * 220.01550 * 9 8 6 12 12 N 1.46498 * 109.47323 * 277.49627 * 11 9 8 13 13 C 1.34776 * 120.00074 * 180.02562 * 12 11 9 14 14 O 1.21282 * 120.00010 * 359.97438 * 13 12 11 15 15 C 1.50695 * 120.00022 * 180.02562 * 13 12 11 16 16 O 1.42899 * 109.47216 * 179.97438 * 15 13 12 17 17 C 1.35991 * 117.00216 * 179.97438 * 16 15 13 18 18 C 1.38675 * 120.00080 * 179.97438 * 17 16 15 19 19 C 1.50700 * 120.00093 * 359.74741 * 18 17 16 20 20 O 1.42901 * 109.47124 * 285.00280 * 19 18 17 21 21 Si 1.86296 * 109.47164 * 164.99860 * 19 18 17 22 22 C 1.38149 * 120.00047 * 179.72450 * 18 17 16 23 23 C 1.38678 * 119.99764 * 0.02562 * 22 18 17 24 24 O 1.35981 * 119.99866 * 179.97438 * 23 22 18 25 25 C 1.42904 * 117.00229 * 180.02562 * 24 23 22 26 26 C 1.38715 * 120.00207 * 0.02562 * 23 22 18 27 27 C 1.38113 * 119.99912 * 359.97438 * 26 23 22 28 28 C 1.53774 * 113.61379 * 179.97438 * 6 4 3 29 29 H 1.09001 * 109.47277 * 299.99915 * 1 2 3 30 30 H 1.09002 * 109.47399 * 60.00108 * 1 2 3 31 31 H 1.09003 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47277 * 240.00085 * 2 1 3 33 33 H 1.09002 * 109.47399 * 119.99892 * 2 1 3 34 34 H 1.08993 * 113.61674 * 25.43525 * 8 6 4 35 35 H 1.09007 * 113.60831 * 254.54218 * 8 6 4 36 36 H 1.09001 * 109.46943 * 157.49347 * 11 9 8 37 37 H 1.09001 * 109.47255 * 37.49668 * 11 9 8 38 38 H 0.97005 * 119.99974 * 0.02562 * 12 11 9 39 39 H 1.09001 * 109.47594 * 59.99531 * 15 13 12 40 40 H 1.09005 * 109.47216 * 299.99920 * 15 13 12 41 41 H 1.09005 * 109.47030 * 44.99882 * 19 18 17 42 42 H 0.96693 * 114.00176 * 59.99894 * 20 19 18 43 43 H 1.48501 * 109.99989 * 299.99976 * 21 19 18 44 44 H 1.48496 * 109.99773 * 61.32224 * 21 19 18 45 45 H 1.08001 * 120.00335 * 179.97438 * 22 18 17 46 46 H 1.09000 * 109.46568 * 300.00199 * 25 24 23 47 47 H 1.08996 * 109.47306 * 59.99680 * 25 24 23 48 48 H 1.08996 * 109.47490 * 179.97438 * 25 24 23 49 49 H 1.08005 * 120.00035 * 180.02562 * 26 23 22 50 50 H 1.08001 * 119.99714 * 179.97438 * 27 26 23 51 51 H 1.09005 * 113.61299 * 105.38648 * 28 6 4 52 52 H 1.09000 * 113.69214 * 334.49812 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4714 3.5810 -0.7563 8 6 3.9856 3.5797 1.3958 9 6 5.3560 4.1445 0.9858 10 9 5.2849 5.3943 0.3610 11 6 6.3976 4.0985 2.1056 12 7 6.2187 5.2551 2.9868 13 6 7.0300 5.4244 4.0496 14 8 7.9078 4.6189 4.2768 15 6 6.8456 6.6138 4.9564 16 8 7.8185 6.5709 6.0021 17 6 7.7903 7.5799 6.9134 18 6 8.7060 7.5995 7.9547 19 6 9.7287 6.4998 8.0797 20 8 9.0975 5.3160 8.5720 21 14 11.0672 7.0279 9.2629 22 6 8.6810 8.6276 8.8772 23 6 7.7399 9.6396 8.7623 24 8 7.7149 10.6512 9.6706 25 6 6.7183 11.6596 9.4914 26 6 6.8232 9.6194 7.7213 27 6 6.8483 8.5916 6.7990 28 6 5.4581 2.9682 0.0013 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.0373 2.8548 2.2080 35 1 3.2283 4.3466 1.5591 36 1 7.3976 4.1227 1.6727 37 1 6.2727 3.1810 2.6806 38 1 5.5164 5.8991 2.8053 39 1 5.8457 6.5890 5.3896 40 1 6.9697 7.5316 4.3816 41 1 10.1667 6.2981 7.1021 42 1 8.3886 4.9833 8.0048 43 1 11.7314 8.2581 8.7620 44 1 10.4878 7.2751 10.6076 45 1 9.3939 8.6427 9.6884 46 1 6.8570 12.1393 8.5225 47 1 5.7290 11.2042 9.5330 48 1 6.8086 12.4043 10.2822 49 1 6.0905 10.4078 7.6316 50 1 6.1343 8.5757 5.9888 51 1 5.8902 3.2411 -0.9615 52 1 5.9136 2.0765 0.4322 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15509216_4974302.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:52:28 Heat of formation + Delta-G solvation = -213.246398 kcal Electronic energy + Delta-G solvation = -36975.124248 eV Core-core repulsion = 31630.200637 eV Total energy + Delta-G solvation = -5344.923611 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.171 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -48.94169 -41.93001 -41.83930 -40.93083 -39.96099 -39.20391 -38.17456 -37.56786 -37.00583 -35.76562 -32.93608 -32.71588 -31.50737 -30.52340 -28.84406 -28.04886 -27.15373 -26.64253 -26.18897 -24.00998 -23.63119 -22.50280 -22.05004 -21.78753 -20.68624 -19.63218 -19.24330 -18.90490 -18.61660 -18.14961 -17.82216 -17.66100 -17.58411 -17.42353 -17.29834 -16.86020 -16.73845 -16.21343 -16.13220 -15.87537 -15.77884 -15.65944 -15.46259 -15.30628 -15.13857 -14.68031 -14.58369 -14.45923 -14.15310 -14.07831 -13.94832 -13.67759 -13.64451 -13.55174 -13.44414 -13.11898 -12.99839 -12.92678 -12.62036 -12.57411 -12.50408 -12.36454 -12.23038 -11.93188 -11.59129 -11.56757 -11.54889 -11.40544 -11.29429 -11.12825 -11.03889 -10.33848 -10.24568 -8.94472 -4.87137 -0.07655 0.20538 1.00802 1.30681 1.33473 1.39071 1.58161 1.59314 1.89311 2.21765 2.41675 2.44950 2.84943 2.97515 3.13015 3.25637 3.38478 3.42533 3.48693 3.61869 3.82929 3.84072 3.91134 3.95359 3.98201 4.02122 4.02927 4.04340 4.11892 4.15993 4.26773 4.28060 4.30415 4.33194 4.33623 4.47882 4.54485 4.55089 4.57209 4.67654 4.74269 4.80301 4.81672 4.86909 4.87990 5.00049 5.06997 5.08075 5.11732 5.19986 5.28689 5.40126 6.03389 6.27820 6.35163 6.54465 6.60597 7.02249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.359 6.359 4 C 0.472 3.528 5 O -0.536 6.536 6 C -0.108 4.108 7 H 0.150 0.850 8 C -0.126 4.126 9 C 0.095 3.905 10 F -0.184 7.184 11 C 0.115 3.885 12 N -0.710 5.710 13 C 0.517 3.483 14 O -0.564 6.564 15 C 0.036 3.964 16 O -0.309 6.309 17 C 0.098 3.902 18 C -0.118 4.118 19 C -0.085 4.085 20 O -0.544 6.544 21 Si 0.811 3.189 22 C -0.143 4.143 23 C 0.088 3.912 24 O -0.342 6.342 25 C 0.017 3.983 26 C -0.159 4.159 27 C -0.154 4.154 28 C -0.133 4.133 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.421 0.579 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.079 0.921 42 H 0.372 0.628 43 H -0.267 1.267 44 H -0.287 1.287 45 H 0.124 0.876 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.114 0.886 49 H 0.166 0.834 50 H 0.175 0.825 51 H 0.103 0.897 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 4.051 -4.183 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.317 3.683 5 O -0.426 6.426 6 C -0.127 4.127 7 H 0.167 0.833 8 C -0.163 4.163 9 C 0.076 3.924 10 F -0.164 7.164 11 C -0.009 4.009 12 N -0.365 5.365 13 C 0.303 3.697 14 O -0.442 6.442 15 C -0.042 4.042 16 O -0.223 6.223 17 C 0.052 3.948 18 C -0.119 4.119 19 C -0.192 4.192 20 O -0.350 6.350 21 Si 0.712 3.288 22 C -0.161 4.161 23 C 0.043 3.957 24 O -0.256 6.256 25 C -0.077 4.077 26 C -0.177 4.177 27 C -0.172 4.172 28 C -0.171 4.171 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.094 0.906 37 H 0.111 0.889 38 H 0.259 0.741 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.097 0.903 42 H 0.221 0.779 43 H -0.193 1.193 44 H -0.214 1.214 45 H 0.141 0.859 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.132 0.868 49 H 0.183 0.817 50 H 0.192 0.808 51 H 0.121 0.879 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.741 3.757 -2.905 8.246 hybrid contribution -1.850 0.535 -1.274 2.309 sum -8.591 4.292 -4.179 10.473 Atomic orbital electron populations 1.21827 0.90724 1.04247 1.03784 1.23260 0.96909 0.79301 1.02525 1.86521 1.24197 1.33493 1.83350 1.23872 0.80592 0.92726 0.71149 1.90687 1.61146 1.44138 1.46599 1.22618 0.96927 0.90363 1.02747 0.83276 1.23621 0.96363 1.01280 0.95075 1.21796 0.97132 0.80613 0.92831 1.92902 1.97165 1.42729 1.83637 1.21779 0.99034 0.90188 0.89949 1.45498 1.36031 1.28069 1.26892 1.20422 0.81151 0.86659 0.81463 1.90792 1.34322 1.46202 1.72845 1.22737 0.94428 0.98221 0.88796 1.86087 1.54658 1.44502 1.37031 1.18678 0.96401 0.89485 0.90189 1.19552 0.99169 0.98152 0.95063 1.25363 1.00254 0.84992 1.08617 1.86654 1.54617 1.41450 1.52318 0.92499 0.80979 0.81036 0.74255 1.20157 1.00717 0.94711 1.00501 1.18993 0.96205 0.89430 0.91068 1.86080 1.56136 1.34176 1.49250 1.23390 0.90478 0.89386 1.04469 1.21438 1.00261 1.01364 0.94668 1.21471 0.99875 0.93850 1.02029 1.23584 0.93797 0.98228 1.01466 0.91121 0.91267 0.88666 0.91471 0.91289 0.87080 0.86299 0.90579 0.88908 0.74120 0.85347 0.85835 0.90300 0.77932 1.19313 1.21420 0.85894 0.91131 0.91186 0.86757 0.81679 0.80750 0.87892 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.75 10.29 71.98 0.74 1.50 16 2 C 0.05 -0.04 6.19 71.98 0.45 0.41 16 3 O -0.36 -0.38 10.22 -51.41 -0.53 -0.91 16 4 C 0.47 0.67 7.49 71.24 0.53 1.20 16 5 O -0.54 -4.26 15.65 21.99 0.34 -3.92 16 6 C -0.11 0.58 4.24 -11.01 -0.05 0.54 16 7 H 0.15 -1.26 8.14 -2.39 -0.02 -1.28 16 8 C -0.13 1.12 7.08 31.12 0.22 1.34 16 9 C 0.10 -0.67 1.67 -10.28 -0.02 -0.68 16 10 F -0.18 0.89 16.80 44.97 0.76 1.64 16 11 C 0.11 -0.51 5.36 86.38 0.46 -0.05 16 12 N -0.71 4.40 5.47 -463.07 -2.53 1.87 16 13 C 0.52 -0.03 7.91 87.66 0.69 0.67 16 14 O -0.56 -6.18 16.50 16.00 0.26 -5.91 16 15 C 0.04 -0.20 5.22 71.23 0.37 0.17 16 16 O -0.31 -1.04 8.57 -74.41 -0.64 -1.68 16 17 C 0.10 0.37 6.62 22.49 0.15 0.52 16 18 C -0.12 -0.97 5.28 -19.78 -0.10 -1.08 16 19 C -0.08 -0.67 2.33 71.24 0.17 -0.50 16 20 O -0.54 -5.15 12.65 -148.98 -1.89 -7.04 16 21 Si 0.81 4.58 30.40 68.60 2.09 6.66 16 22 C -0.14 -1.38 8.59 22.35 0.19 -1.18 16 23 C 0.09 0.56 6.69 22.49 0.15 0.71 16 24 O -0.34 -2.12 10.50 -93.34 -0.98 -3.10 16 25 C 0.02 -0.06 9.81 113.37 1.11 1.05 16 26 C -0.16 0.04 9.03 22.35 0.20 0.24 16 27 C -0.15 0.30 9.03 22.35 0.20 0.50 16 28 C -0.13 0.68 6.85 31.10 0.21 0.89 16 29 H 0.07 -0.37 8.14 -2.39 -0.02 -0.39 16 30 H 0.07 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.09 -0.72 8.14 -2.39 -0.02 -0.74 16 32 H 0.07 0.00 8.13 -2.39 -0.02 -0.02 16 33 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 34 H 0.11 -0.97 7.92 -2.39 -0.02 -0.99 16 35 H 0.12 -1.46 8.14 -2.38 -0.02 -1.48 16 36 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 37 H 0.09 -0.34 7.94 -2.39 -0.02 -0.36 16 38 H 0.42 -5.20 8.19 -92.70 -0.76 -5.96 16 39 H 0.13 -1.57 7.67 -2.39 -0.02 -1.59 16 40 H 0.12 -1.38 7.65 -2.38 -0.02 -1.40 16 41 H 0.08 0.59 7.82 -2.38 -0.02 0.57 16 42 H 0.37 2.44 8.61 -74.06 -0.64 1.80 16 43 H -0.27 -2.20 7.11 99.48 0.71 -1.49 16 44 H -0.29 -3.21 6.81 99.48 0.68 -2.54 16 45 H 0.12 1.39 4.94 -2.91 -0.01 1.37 16 46 H 0.07 -0.46 7.66 -2.39 -0.02 -0.47 16 47 H 0.07 -0.44 7.66 -2.39 -0.02 -0.46 16 48 H 0.11 -0.71 8.14 -2.39 -0.02 -0.73 16 49 H 0.17 -1.11 6.29 -2.91 -0.02 -1.12 16 50 H 0.18 -1.85 6.29 -2.91 -0.02 -1.87 16 51 H 0.10 -0.60 8.14 -2.38 -0.02 -0.62 16 52 H 0.11 -0.34 7.40 -2.39 -0.02 -0.35 16 Total: 0.00 -28.98 437.78 2.17 -26.81 By element: Atomic # 1 Polarization: -20.27 SS G_CDS: -0.40 Total: -20.68 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.69 Total: 6.25 kcal Atomic # 7 Polarization: 4.40 SS G_CDS: -2.53 Total: 1.87 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -3.42 Total: -22.56 kcal Atomic # 9 Polarization: 0.89 SS G_CDS: 0.76 Total: 1.64 kcal Atomic # 14 Polarization: 4.58 SS G_CDS: 2.09 Total: 6.66 kcal Total: -28.98 2.17 -26.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15509216_4974302.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -186.434 kcal (2) G-P(sol) polarization free energy of solvation -28.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds