Wall clock time and date at job start Sun Mar 7 2021 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34783 * 119.99926 * 2 1 4 4 O 1.21696 * 119.99833 * 186.23649 * 3 2 1 5 5 C 1.46671 * 119.99945 * 6.23316 * 3 2 1 6 6 C 1.37868 * 126.23133 * 187.93590 * 5 3 2 7 7 C 1.39835 * 107.08818 * 179.97438 * 6 5 3 8 8 C 1.50698 * 126.07074 * 179.97438 * 7 6 5 9 9 O 1.42896 * 109.47319 * 65.00397 * 8 7 6 10 10 Si 1.86305 * 109.47097 * 185.00256 * 8 7 6 11 11 C 1.35457 * 107.86031 * 0.02562 * 7 6 5 12 12 N 1.35528 * 108.87369 * 359.76453 * 11 7 6 13 13 C 1.46500 * 120.00157 * 180.02562 * 2 1 3 14 14 H 1.08998 * 109.47250 * 180.02562 * 13 2 1 15 15 C 1.53000 * 109.46687 * 300.00039 * 13 2 1 16 16 C 1.53002 * 109.47086 * 180.02562 * 15 13 2 17 17 C 1.53003 * 109.46836 * 299.99660 * 16 15 13 18 18 H 1.09001 * 109.46887 * 180.02562 * 17 16 15 19 19 O 1.42902 * 109.47124 * 300.00000 * 17 16 15 20 20 C 1.53000 * 109.47005 * 60.00290 * 17 16 15 21 21 C 1.53002 * 109.47086 * 299.99556 * 20 17 16 22 22 H 1.08998 * 109.47003 * 275.80303 * 1 2 3 23 23 H 1.09001 * 109.46629 * 35.80421 * 1 2 3 24 24 H 1.08998 * 109.47473 * 155.80350 * 1 2 3 25 25 H 1.08006 * 126.45879 * 359.93359 * 6 5 3 26 26 H 1.09001 * 109.47286 * 304.99885 * 8 7 6 27 27 H 0.96699 * 114.00166 * 59.99776 * 9 8 7 28 28 H 1.48502 * 110.00107 * 58.67909 * 10 8 7 29 29 H 1.48503 * 109.99970 * 180.02562 * 10 8 7 30 30 H 1.08003 * 125.56251 * 180.02562 * 11 7 6 31 31 H 0.96996 * 125.68317 * 180.25969 * 12 11 7 32 32 H 1.08999 * 109.47411 * 299.99443 * 15 13 2 33 33 H 1.09002 * 109.47585 * 59.99842 * 15 13 2 34 34 H 1.09002 * 109.47311 * 179.97438 * 16 15 13 35 35 H 1.09002 * 109.47181 * 59.99418 * 16 15 13 36 36 H 0.96701 * 113.99894 * 300.00023 * 19 17 16 37 37 H 1.08989 * 109.47225 * 59.99946 * 20 17 16 38 38 H 1.09009 * 109.46907 * 180.02562 * 20 17 16 39 39 H 1.08993 * 109.47538 * 180.02562 * 21 20 17 40 40 H 1.09002 * 109.47181 * 300.00581 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3505 1.1704 -0.1145 5 6 1.4120 2.4337 0.1379 6 6 1.9448 3.6980 0.0021 7 6 0.9038 4.6074 0.2133 8 6 1.0146 6.1096 0.1658 9 8 1.3460 6.5210 -1.1619 10 14 -0.6127 6.8683 0.6631 11 6 -0.2217 3.8985 0.4694 12 7 0.0727 2.5764 0.4217 13 6 2.1976 -1.2687 -0.0006 14 1 3.2692 -1.0695 0.0000 15 6 1.8279 -2.0715 1.2483 16 6 2.5934 -3.3963 1.2482 17 6 2.2242 -4.1983 -0.0014 18 1 2.7692 -5.1423 -0.0013 19 8 0.8194 -4.4599 -0.0018 20 6 2.5939 -3.3955 -1.2503 21 6 1.8284 -2.0708 -1.2501 22 1 -0.3633 0.1039 1.0224 23 1 -0.3632 0.8335 -0.6012 24 1 -0.3634 -0.9373 -0.4212 25 1 2.9727 3.9404 -0.2241 26 1 1.7939 6.4384 0.8533 27 1 0.6948 6.2617 -1.8281 28 1 -0.9842 6.4227 2.0301 29 1 -0.5167 8.3496 0.6197 30 1 -1.1956 4.3182 0.6736 31 1 -0.5555 1.8514 0.5652 32 1 2.0912 -1.5004 2.1386 33 1 0.7562 -2.2707 1.2483 34 1 2.3304 -3.9680 2.1381 35 1 3.6650 -3.1967 1.2484 36 1 0.5134 -4.9664 0.7631 37 1 3.6654 -3.1960 -1.2500 38 1 2.3305 -3.9668 -2.1406 39 1 2.0914 -1.4990 -2.1400 40 1 0.7568 -2.2703 -1.2504 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:38:00 Heat of formation + Delta-G solvation = -56.350792 kcal Electronic energy + Delta-G solvation = -22783.337366 eV Core-core repulsion = 19372.819419 eV Total energy + Delta-G solvation = -3410.517947 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.70201 -41.02174 -39.55799 -37.67671 -37.19307 -35.08781 -32.64857 -31.88530 -31.04695 -29.90481 -28.12480 -26.52873 -24.50675 -23.80335 -22.42503 -21.23252 -20.82900 -20.61209 -19.00246 -17.94662 -17.61950 -17.32002 -17.14842 -16.80423 -16.32976 -15.97843 -15.65508 -15.46758 -14.90894 -14.78870 -14.54369 -14.41845 -14.23036 -14.08376 -13.94144 -13.50860 -13.33522 -13.27243 -13.24012 -13.00978 -12.42570 -12.25670 -12.11633 -11.95099 -11.50663 -11.41888 -11.18173 -10.72691 -10.33319 -10.04678 -9.82180 -9.28853 -4.93231 0.32328 1.41839 1.50245 1.68771 1.75738 2.08778 2.11327 2.23406 3.36224 3.40531 3.66356 3.69728 3.71286 3.90261 3.95095 3.98262 4.03483 4.14454 4.15192 4.28405 4.34422 4.38550 4.40700 4.45473 4.56774 4.62813 4.64637 4.83033 4.88803 4.93330 4.99751 5.01890 5.08250 5.11502 5.22464 5.31575 5.40375 5.58679 5.73886 6.17480 6.41322 6.90904 6.91249 6.92725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.606 5.606 3 C 0.582 3.418 4 O -0.579 6.579 5 C -0.069 4.069 6 C -0.105 4.105 7 C -0.226 4.226 8 C -0.054 4.054 9 O -0.566 6.566 10 Si 0.806 3.194 11 C 0.056 3.944 12 N -0.522 5.522 13 C 0.140 3.860 14 H 0.073 0.927 15 C -0.114 4.114 16 C -0.148 4.148 17 C 0.107 3.893 18 H 0.066 0.934 19 O -0.577 6.577 20 C -0.114 4.114 21 C -0.115 4.115 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.393 0.607 28 H -0.275 1.275 29 H -0.309 1.309 30 H 0.219 0.781 31 H 0.437 0.563 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.392 0.608 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -4.747 1.194 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.337 5.337 3 C 0.373 3.627 4 O -0.460 6.460 5 C -0.182 4.182 6 C -0.133 4.133 7 C -0.232 4.232 8 C -0.163 4.163 9 O -0.374 6.374 10 Si 0.710 3.290 11 C -0.082 4.082 12 N -0.126 5.126 13 C 0.038 3.962 14 H 0.091 0.909 15 C -0.152 4.152 16 C -0.186 4.186 17 C 0.048 3.952 18 H 0.084 0.916 19 O -0.385 6.385 20 C -0.152 4.152 21 C -0.153 4.153 22 H 0.101 0.899 23 H 0.104 0.896 24 H 0.121 0.879 25 H 0.139 0.861 26 H 0.107 0.893 27 H 0.243 0.757 28 H -0.201 1.201 29 H -0.238 1.238 30 H 0.236 0.764 31 H 0.286 0.714 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.241 0.759 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.829 -3.902 1.463 9.763 hybrid contribution 1.095 -0.580 0.688 1.417 sum -7.734 -4.482 2.151 9.194 Atomic orbital electron populations 1.22422 0.78073 1.05703 1.03239 1.47840 1.08054 1.05037 1.72769 1.17451 0.86233 0.83091 0.75911 1.90815 1.15298 1.87155 1.52701 1.20041 0.85429 0.93944 1.18754 1.21218 0.99360 0.90746 1.01937 1.19968 0.93817 0.96128 1.13330 1.24779 1.11927 0.91947 0.87636 1.86455 1.53362 1.80323 1.17229 0.93911 0.77911 0.76028 0.81118 1.22501 1.00464 0.82392 1.02834 1.42949 1.07748 1.08866 1.53056 1.21159 0.96678 0.82027 0.96374 0.90898 1.21708 1.02081 0.95531 0.95903 1.22219 1.00946 0.96219 0.99225 1.21737 0.82284 0.96994 0.94152 0.91560 1.86466 1.23118 1.78161 1.50738 1.21557 1.00352 0.95267 0.98071 1.21698 1.01931 0.95445 0.96236 0.89922 0.89646 0.87871 0.86072 0.89284 0.75684 1.20102 1.23762 0.76424 0.71406 0.92678 0.89697 0.89572 0.91211 0.75853 0.90380 0.90797 0.92957 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.36 7.82 127.77 1.00 0.64 16 2 N -0.61 -1.07 2.76 -827.30 -2.28 -3.35 16 3 C 0.58 5.44 7.63 86.44 0.66 6.10 16 4 O -0.58 -10.85 16.24 -4.33 -0.07 -10.93 16 5 C -0.07 -0.37 6.63 40.35 0.27 -0.10 16 6 C -0.11 -0.89 10.60 22.57 0.24 -0.65 16 7 C -0.23 -0.39 5.43 -20.12 -0.11 -0.50 16 8 C -0.05 -0.08 3.02 71.24 0.22 0.13 16 9 O -0.57 -2.00 12.88 -148.98 -1.92 -3.92 16 10 Si 0.81 -3.34 30.60 68.60 2.10 -1.24 16 11 C 0.06 -0.30 10.45 83.48 0.87 0.57 16 12 N -0.52 2.24 5.07 -183.63 -0.93 1.31 16 13 C 0.14 0.30 2.51 44.99 0.11 0.42 16 14 H 0.07 0.61 6.91 -2.39 -0.02 0.60 16 15 C -0.11 0.23 5.06 30.60 0.15 0.38 16 16 C -0.15 0.58 5.64 30.60 0.17 0.75 16 17 C 0.11 -0.37 3.77 30.60 0.12 -0.26 16 18 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 19 O -0.58 2.01 11.97 -148.98 -1.78 0.23 16 20 C -0.11 0.10 5.66 30.60 0.17 0.28 16 21 C -0.11 -0.05 5.05 30.60 0.15 0.10 16 22 H 0.08 -0.97 7.45 -2.39 -0.02 -0.99 16 23 H 0.09 -0.83 5.68 -2.39 -0.01 -0.84 16 24 H 0.10 -0.94 6.44 -2.39 -0.02 -0.96 16 25 H 0.12 1.57 8.06 -2.91 -0.02 1.54 16 26 H 0.09 0.43 7.96 -2.39 -0.02 0.41 16 27 H 0.39 -2.16 8.70 -74.06 -0.64 -2.80 16 28 H -0.27 0.31 7.11 99.48 0.71 1.02 16 29 H -0.31 -1.48 7.11 99.48 0.71 -0.78 16 30 H 0.22 -3.14 6.21 -2.91 -0.02 -3.16 16 31 H 0.44 -4.80 4.94 -92.71 -0.46 -5.25 16 32 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.08 -0.36 7.21 -2.39 -0.02 -0.38 16 34 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.39 -4.16 9.08 -74.06 -0.67 -4.84 16 37 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 39 H 0.05 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.08 -0.06 6.21 -2.39 -0.01 -0.07 16 Total: 0.00 -26.14 314.84 -1.51 -27.65 By element: Atomic # 1 Polarization: -16.97 SS G_CDS: -0.65 Total: -17.63 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 4.03 Total: 7.87 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -3.22 Total: -2.04 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -3.77 Total: -14.62 kcal Atomic # 14 Polarization: -3.34 SS G_CDS: 2.10 Total: -1.24 kcal Total: -26.14 -1.51 -27.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.697 kcal (2) G-P(sol) polarization free energy of solvation -26.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds