Wall clock time and date at job start Sun Mar 7 2021 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38968 * 119.95144 * 2 1 4 4 O 1.35707 * 119.91687 * 359.97438 * 3 2 1 5 5 C 1.39023 * 120.17236 * 180.02562 * 3 2 1 6 6 C 1.50707 * 119.95565 * 179.97438 * 5 3 2 7 7 O 1.42899 * 109.47026 * 75.00126 * 6 5 3 8 8 Si 1.86298 * 109.47025 * 195.00022 * 6 5 3 9 9 C 1.37679 * 120.09063 * 359.67713 * 5 3 2 10 10 C 1.39760 * 119.90892 * 0.59950 * 9 5 3 11 11 C 1.47599 * 120.08662 * 179.69890 * 10 9 5 12 12 O 1.21577 * 120.00252 * 20.23359 * 11 10 9 13 13 N 1.34779 * 119.99602 * 200.23635 * 11 10 9 14 14 C 1.46500 * 120.00079 * 7.05999 * 13 11 10 15 15 C 1.46503 * 119.99961 * 187.06524 * 13 11 10 16 16 H 1.09002 * 109.46709 * 359.97438 * 15 13 11 17 17 C 1.52999 * 109.46914 * 119.99680 * 15 13 11 18 18 C 1.53007 * 109.47047 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46701 * 300.00130 * 18 17 15 20 20 H 1.09005 * 109.46573 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47037 * 299.99762 * 19 18 17 22 22 C 1.53005 * 109.47172 * 60.00159 * 19 18 17 23 23 C 1.52995 * 109.47003 * 239.99652 * 15 13 11 24 24 C 1.37715 * 119.95567 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46660 * 270.01931 * 1 2 3 26 26 H 1.08994 * 109.47078 * 30.02203 * 1 2 3 27 27 H 1.08996 * 109.47200 * 150.02299 * 1 2 3 28 28 H 0.96702 * 113.99863 * 90.00000 * 4 3 2 29 29 H 1.08996 * 109.46806 * 315.00317 * 6 5 3 30 30 H 0.96701 * 113.99991 * 59.99435 * 7 6 5 31 31 H 1.48504 * 109.99893 * 179.97438 * 8 6 5 32 32 H 1.48500 * 110.00206 * 301.31745 * 8 6 5 33 33 H 1.08002 * 120.04867 * 180.31832 * 9 5 3 34 34 H 1.08994 * 109.47442 * 267.53308 * 14 13 11 35 35 H 1.09009 * 109.47077 * 147.53201 * 14 13 11 36 36 H 1.09000 * 109.47151 * 27.53816 * 14 13 11 37 37 H 1.08994 * 109.47352 * 299.99951 * 17 15 13 38 38 H 1.09002 * 109.47192 * 60.00590 * 17 15 13 39 39 H 1.08995 * 109.47399 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.46819 * 59.99605 * 18 17 15 41 41 H 0.96697 * 113.99940 * 299.99702 * 21 19 18 42 42 H 1.09000 * 109.46618 * 179.97438 * 22 19 18 43 43 H 1.08996 * 109.47161 * 59.99707 * 22 19 18 44 44 H 1.08996 * 109.47448 * 300.00121 * 23 15 13 45 45 H 1.09002 * 109.47336 * 60.00551 * 23 15 13 46 46 H 1.08001 * 120.04963 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2094 -0.0005 6 6 4.3386 2.5181 -0.0011 7 8 4.2726 3.1049 1.3001 8 14 6.1196 2.2157 -0.4563 9 6 4.2860 0.0209 0.0056 10 6 3.5919 -1.1922 -0.0002 11 6 4.3329 -2.4687 -0.0003 12 8 5.4910 -2.4994 0.3685 13 7 3.7257 -3.6002 -0.4094 14 6 2.3856 -3.5407 -0.9982 15 6 4.4058 -4.8898 -0.2651 16 1 5.3847 -4.7355 0.1889 17 6 3.5693 -5.8106 0.6257 18 6 4.2799 -7.1572 0.7770 19 6 4.4532 -7.7998 -0.6007 20 1 4.9599 -8.7590 -0.4929 21 8 3.1704 -8.0025 -1.1965 22 6 5.2897 -6.8790 -1.4914 23 6 4.5786 -5.5322 -1.6428 24 6 2.1947 -1.1932 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.3219 2.7181 0.8828 29 1 3.8875 3.1938 -0.7277 30 1 4.6565 2.5572 1.9985 31 1 6.8675 3.4987 -0.4611 32 1 6.7372 1.2708 0.5086 33 1 5.3660 0.0259 0.0104 34 1 1.6388 -3.6843 -0.2174 35 1 2.2829 -4.3254 -1.7479 36 1 2.2379 -2.5682 -1.4678 37 1 3.4462 -5.3529 1.6072 38 1 2.5906 -5.9649 0.1713 39 1 3.6838 -7.8133 1.4112 40 1 5.2585 -7.0025 1.2315 41 1 2.5855 -8.5779 -0.6848 42 1 5.4135 -7.3371 -2.4727 43 1 6.2682 -6.7245 -1.0369 44 1 3.5999 -5.6864 -2.0972 45 1 5.1745 -4.8763 -2.2774 46 1 1.6548 -2.1285 0.0014 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15557736_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:40:06 Heat of formation + Delta-G solvation = -112.611483 kcal Electronic energy + Delta-G solvation = -28537.994967 eV Core-core repulsion = 24588.017333 eV Total energy + Delta-G solvation = -3949.977634 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.98546 -40.87938 -39.66608 -37.93631 -37.55918 -37.12842 -35.09540 -34.01076 -32.04567 -31.90208 -29.91252 -28.44165 -27.95290 -26.73936 -24.91367 -23.82947 -22.89250 -22.11908 -20.83125 -20.40897 -19.57736 -18.53565 -18.16594 -17.72249 -17.50583 -17.11743 -16.66992 -16.42337 -16.23720 -15.89085 -15.82478 -15.69193 -15.12437 -14.79352 -14.70975 -14.52365 -14.27132 -14.11994 -13.98548 -13.86184 -13.42248 -13.37147 -13.28929 -13.12286 -13.04745 -12.86389 -12.56386 -12.42748 -12.35696 -12.14700 -11.71964 -11.58119 -11.45157 -11.30667 -10.93579 -10.73642 -10.56368 -9.92975 -9.76601 -9.57054 -4.93835 -0.33490 0.08063 1.27741 1.63179 1.66156 1.85779 1.97394 2.52734 3.11918 3.22368 3.33191 3.35987 3.49871 3.62274 3.66528 3.69320 3.86432 3.89028 4.01101 4.09616 4.12962 4.21623 4.25420 4.31593 4.36305 4.42823 4.43682 4.50338 4.54600 4.56789 4.62285 4.64564 4.70453 4.82736 4.87072 4.96523 5.02027 5.04093 5.07513 5.11125 5.12656 5.22896 5.29898 5.35063 5.48619 5.58890 6.29915 6.35321 6.58203 6.63789 7.12370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.121 4.121 3 C 0.160 3.840 4 O -0.489 6.489 5 C -0.150 4.150 6 C -0.065 4.065 7 O -0.529 6.529 8 Si 0.682 3.318 9 C -0.054 4.054 10 C -0.139 4.139 11 C 0.562 3.438 12 O -0.534 6.534 13 N -0.605 5.605 14 C 0.061 3.939 15 C 0.141 3.859 16 H 0.101 0.899 17 C -0.122 4.122 18 C -0.150 4.150 19 C 0.103 3.897 20 H 0.058 0.942 21 O -0.564 6.564 22 C -0.110 4.110 23 C -0.124 4.124 24 C -0.087 4.087 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.398 0.602 29 H 0.123 0.877 30 H 0.375 0.625 31 H -0.253 1.253 32 H -0.255 1.255 33 H 0.142 0.858 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.377 0.623 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 -3.838 -0.370 5.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.121 4.121 3 C 0.115 3.885 4 O -0.300 6.300 5 C -0.151 4.151 6 C -0.175 4.175 7 O -0.335 6.335 8 Si 0.583 3.417 9 C -0.073 4.073 10 C -0.142 4.142 11 C 0.351 3.649 12 O -0.412 6.412 13 N -0.337 5.337 14 C -0.081 4.081 15 C 0.038 3.962 16 H 0.119 0.881 17 C -0.161 4.161 18 C -0.189 4.189 19 C 0.044 3.956 20 H 0.075 0.925 21 O -0.369 6.369 22 C -0.148 4.148 23 C -0.162 4.162 24 C -0.105 4.105 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.256 0.744 29 H 0.141 0.859 30 H 0.223 0.777 31 H -0.177 1.177 32 H -0.179 1.179 33 H 0.160 0.840 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.224 0.776 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.085 0.915 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.630 -2.961 -1.320 4.175 hybrid contribution -0.620 -0.413 2.154 2.279 sum -3.250 -3.374 0.834 4.759 Atomic orbital electron populations 1.20725 0.89769 1.03774 1.02752 1.20258 0.97277 0.92093 1.02496 1.18330 0.88786 0.85308 0.96103 1.84654 1.75640 1.35767 1.33939 1.20532 0.93840 0.95740 1.04957 1.24886 1.10448 0.93866 0.88343 1.86606 1.82776 1.47682 1.16413 0.94786 0.74438 0.81306 0.91187 1.21132 1.00659 0.90279 0.95229 1.19761 0.93642 0.93241 1.07518 1.18250 0.86069 0.83418 0.77148 1.90794 1.16444 1.85952 1.47975 1.47721 1.17975 1.06548 1.61455 1.22445 0.83140 1.04113 0.98430 1.21170 0.97299 0.81327 0.96397 0.88097 1.21774 0.99828 0.94756 0.99721 1.22225 1.01961 0.96946 0.97719 1.21808 0.84645 0.97402 0.91774 0.92450 1.86512 1.26254 1.72310 1.51839 1.21527 0.98018 0.94679 1.00590 1.21794 1.02042 0.95961 0.96413 1.22130 0.93095 0.99172 0.96126 0.90978 0.90395 0.91064 0.74385 0.85877 0.77742 1.17736 1.17930 0.84031 0.91875 0.90318 0.89496 0.91752 0.90781 0.91158 0.90637 0.77621 0.90685 0.90318 0.90487 0.91500 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.24 9.78 36.01 0.35 0.59 16 2 C -0.12 0.04 5.89 -104.54 -0.62 -0.58 16 3 C 0.16 0.11 6.66 -39.02 -0.26 -0.15 16 4 O -0.49 -0.10 11.84 -18.83 -0.22 -0.32 16 5 C -0.15 -0.15 5.27 -104.53 -0.55 -0.70 16 6 C -0.07 -0.04 2.37 36.01 0.09 0.04 16 7 O -0.53 -0.65 12.88 -35.23 -0.45 -1.10 16 8 Si 0.68 0.39 30.26 -169.99 -5.14 -4.76 16 9 C -0.05 -0.10 8.19 -39.22 -0.32 -0.42 16 10 C -0.14 -0.23 5.56 -104.96 -0.58 -0.81 16 11 C 0.56 1.74 7.51 -12.44 -0.09 1.65 16 12 O -0.53 -3.53 15.87 5.30 0.08 -3.44 16 13 N -0.61 -0.33 2.76 -175.14 -0.48 -0.81 16 14 C 0.06 -0.14 7.71 59.85 0.46 0.32 16 15 C 0.14 0.06 2.52 -67.93 -0.17 -0.11 16 16 H 0.10 0.24 6.92 -51.93 -0.36 -0.12 16 17 C -0.12 0.12 5.06 -26.73 -0.14 -0.01 16 18 C -0.15 0.28 5.64 -26.73 -0.15 0.13 16 19 C 0.10 -0.15 3.77 -26.73 -0.10 -0.25 16 20 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 21 O -0.56 0.53 11.97 -35.23 -0.42 0.11 16 22 C -0.11 0.08 5.67 -26.70 -0.15 -0.07 16 23 C -0.12 0.02 5.03 -26.71 -0.13 -0.12 16 24 C -0.09 0.04 7.26 -39.22 -0.28 -0.24 16 25 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 26 H 0.08 -0.11 7.52 -51.93 -0.39 -0.50 16 27 H 0.07 -0.23 8.08 -51.93 -0.42 -0.65 16 28 H 0.40 -1.17 9.06 45.56 0.41 -0.76 16 29 H 0.12 0.08 7.82 -51.93 -0.41 -0.33 16 30 H 0.38 -0.50 8.70 45.56 0.40 -0.11 16 31 H -0.25 -0.84 7.11 56.52 0.40 -0.44 16 32 H -0.25 -0.74 6.67 56.52 0.38 -0.36 16 33 H 0.14 0.32 4.57 -52.49 -0.24 0.08 16 34 H 0.06 -0.24 6.91 -51.93 -0.36 -0.60 16 35 H 0.08 -0.22 6.43 -51.92 -0.33 -0.55 16 36 H 0.09 -0.23 5.38 -51.93 -0.28 -0.51 16 37 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 38 H 0.07 -0.09 7.21 -51.93 -0.37 -0.47 16 39 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 40 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 41 H 0.38 -1.63 9.08 45.56 0.41 -1.21 16 42 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 43 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 44 H 0.08 0.01 6.21 -51.93 -0.32 -0.31 16 45 H 0.07 0.04 8.14 -51.93 -0.42 -0.38 16 46 H 0.16 -0.41 4.02 -52.49 -0.21 -0.62 16 LS Contribution 356.31 15.07 5.37 5.37 Total: 0.00 -8.26 356.31 -9.00 -17.26 By element: Atomic # 1 Polarization: -6.49 SS G_CDS: -5.08 Total: -11.57 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.65 Total: -0.73 kcal Atomic # 7 Polarization: -0.33 SS G_CDS: -0.48 Total: -0.81 kcal Atomic # 8 Polarization: -3.74 SS G_CDS: -1.01 Total: -4.76 kcal Atomic # 14 Polarization: 0.39 SS G_CDS: -5.14 Total: -4.76 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -8.26 -9.00 -17.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.349 kcal (2) G-P(sol) polarization free energy of solvation -8.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds