Wall clock time and date at job start Sun Mar 7 2021 05:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38968 * 119.95144 * 2 1 4 4 O 1.35707 * 119.91687 * 359.97438 * 3 2 1 5 5 C 1.39023 * 120.17236 * 180.02562 * 3 2 1 6 6 C 1.50707 * 119.95565 * 179.97438 * 5 3 2 7 7 O 1.42899 * 109.47026 * 75.00126 * 6 5 3 8 8 Si 1.86298 * 109.47025 * 195.00022 * 6 5 3 9 9 C 1.37679 * 120.09063 * 359.67713 * 5 3 2 10 10 C 1.39760 * 119.90892 * 0.59950 * 9 5 3 11 11 C 1.47599 * 120.08662 * 179.69890 * 10 9 5 12 12 O 1.21577 * 120.00252 * 20.23359 * 11 10 9 13 13 N 1.34779 * 119.99602 * 200.23635 * 11 10 9 14 14 C 1.46500 * 120.00079 * 7.05999 * 13 11 10 15 15 C 1.46503 * 119.99961 * 187.06524 * 13 11 10 16 16 H 1.09002 * 109.46709 * 359.97438 * 15 13 11 17 17 C 1.52999 * 109.46914 * 119.99680 * 15 13 11 18 18 C 1.53007 * 109.47047 * 180.02562 * 17 15 13 19 19 C 1.53004 * 109.46701 * 300.00130 * 18 17 15 20 20 H 1.09005 * 109.46573 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.47037 * 299.99762 * 19 18 17 22 22 C 1.53005 * 109.47172 * 60.00159 * 19 18 17 23 23 C 1.52995 * 109.47003 * 239.99652 * 15 13 11 24 24 C 1.37715 * 119.95567 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.46660 * 270.01931 * 1 2 3 26 26 H 1.08994 * 109.47078 * 30.02203 * 1 2 3 27 27 H 1.08996 * 109.47200 * 150.02299 * 1 2 3 28 28 H 0.96702 * 113.99863 * 90.00000 * 4 3 2 29 29 H 1.08996 * 109.46806 * 315.00317 * 6 5 3 30 30 H 0.96701 * 113.99991 * 59.99435 * 7 6 5 31 31 H 1.48504 * 109.99893 * 179.97438 * 8 6 5 32 32 H 1.48500 * 110.00206 * 301.31745 * 8 6 5 33 33 H 1.08002 * 120.04867 * 180.31832 * 9 5 3 34 34 H 1.08994 * 109.47442 * 267.53308 * 14 13 11 35 35 H 1.09009 * 109.47077 * 147.53201 * 14 13 11 36 36 H 1.09000 * 109.47151 * 27.53816 * 14 13 11 37 37 H 1.08994 * 109.47352 * 299.99951 * 17 15 13 38 38 H 1.09002 * 109.47192 * 60.00590 * 17 15 13 39 39 H 1.08995 * 109.47399 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.46819 * 59.99605 * 18 17 15 41 41 H 0.96697 * 113.99940 * 299.99702 * 21 19 18 42 42 H 1.09000 * 109.46618 * 179.97438 * 22 19 18 43 43 H 1.08996 * 109.47161 * 59.99707 * 22 19 18 44 44 H 1.08996 * 109.47448 * 300.00121 * 23 15 13 45 45 H 1.09002 * 109.47336 * 60.00551 * 23 15 13 46 46 H 1.08001 * 120.04963 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 -0.0005 5 6 3.5911 1.2094 -0.0005 6 6 4.3386 2.5181 -0.0011 7 8 4.2726 3.1049 1.3001 8 14 6.1196 2.2157 -0.4563 9 6 4.2860 0.0209 0.0056 10 6 3.5919 -1.1922 -0.0002 11 6 4.3329 -2.4687 -0.0003 12 8 5.4910 -2.4994 0.3685 13 7 3.7257 -3.6002 -0.4094 14 6 2.3856 -3.5407 -0.9982 15 6 4.4058 -4.8898 -0.2651 16 1 5.3847 -4.7355 0.1889 17 6 3.5693 -5.8106 0.6257 18 6 4.2799 -7.1572 0.7770 19 6 4.4532 -7.7998 -0.6007 20 1 4.9599 -8.7590 -0.4929 21 8 3.1704 -8.0025 -1.1965 22 6 5.2897 -6.8790 -1.4914 23 6 4.5786 -5.5322 -1.6428 24 6 2.1947 -1.1932 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.3219 2.7181 0.8828 29 1 3.8875 3.1938 -0.7277 30 1 4.6565 2.5572 1.9985 31 1 6.8675 3.4987 -0.4611 32 1 6.7372 1.2708 0.5086 33 1 5.3660 0.0259 0.0104 34 1 1.6388 -3.6843 -0.2174 35 1 2.2829 -4.3254 -1.7479 36 1 2.2379 -2.5682 -1.4678 37 1 3.4462 -5.3529 1.6072 38 1 2.5906 -5.9649 0.1713 39 1 3.6838 -7.8133 1.4112 40 1 5.2585 -7.0025 1.2315 41 1 2.5855 -8.5779 -0.6848 42 1 5.4135 -7.3371 -2.4727 43 1 6.2682 -6.7245 -1.0369 44 1 3.5999 -5.6864 -2.0972 45 1 5.1745 -4.8763 -2.2774 46 1 1.6548 -2.1285 0.0014 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_13287732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:40:05 Heat of formation + Delta-G solvation = -114.770662 kcal Electronic energy + Delta-G solvation = -28538.088596 eV Core-core repulsion = 24588.017333 eV Total energy + Delta-G solvation = -3950.071263 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 322.166 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.05084 -40.89546 -39.68119 -38.00190 -37.60321 -37.17178 -35.05994 -33.99831 -32.05512 -31.83930 -29.87405 -28.39981 -27.87681 -26.79150 -24.94540 -23.77003 -22.88151 -22.11732 -20.80380 -20.45117 -19.57965 -18.60339 -18.22936 -17.62862 -17.54103 -17.13007 -16.69785 -16.43177 -16.29401 -15.95964 -15.86196 -15.63568 -15.16462 -14.81162 -14.73992 -14.47926 -14.16987 -14.13353 -13.99791 -13.88133 -13.37609 -13.30082 -13.22908 -13.08078 -12.94538 -12.81163 -12.56049 -12.47026 -12.32574 -12.07636 -11.94277 -11.59313 -11.44475 -11.29531 -11.00824 -10.68381 -10.64818 -9.92918 -9.85002 -9.57931 -5.04954 -0.39002 0.05887 1.18315 1.48783 1.54023 1.80714 1.81806 2.46546 3.14556 3.30300 3.33014 3.39659 3.48044 3.66554 3.70208 3.74231 3.95190 3.96060 4.07133 4.11975 4.19732 4.25350 4.36400 4.39911 4.43731 4.47801 4.48944 4.54171 4.62689 4.63831 4.75108 4.79527 4.82879 4.91248 4.97801 5.02830 5.03931 5.06346 5.13251 5.16366 5.21234 5.26692 5.33658 5.37808 5.49425 5.61510 6.22553 6.36775 6.70364 6.94208 6.97054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.120 4.120 3 C 0.157 3.843 4 O -0.495 6.495 5 C -0.153 4.153 6 C -0.060 4.060 7 O -0.539 6.539 8 Si 0.743 3.257 9 C -0.067 4.067 10 C -0.152 4.152 11 C 0.555 3.445 12 O -0.583 6.583 13 N -0.599 5.599 14 C 0.053 3.947 15 C 0.140 3.860 16 H 0.074 0.926 17 C -0.115 4.115 18 C -0.147 4.147 19 C 0.106 3.894 20 H 0.065 0.935 21 O -0.577 6.577 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.076 4.076 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.411 0.589 29 H 0.128 0.872 30 H 0.385 0.615 31 H -0.289 1.289 32 H -0.292 1.292 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.392 0.608 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.563 -4.709 -0.480 8.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C 0.111 3.889 4 O -0.309 6.309 5 C -0.154 4.154 6 C -0.171 4.171 7 O -0.347 6.347 8 Si 0.650 3.350 9 C -0.085 4.085 10 C -0.155 4.155 11 C 0.346 3.654 12 O -0.465 6.465 13 N -0.330 5.330 14 C -0.088 4.088 15 C 0.037 3.963 16 H 0.092 0.908 17 C -0.153 4.153 18 C -0.186 4.186 19 C 0.047 3.953 20 H 0.083 0.917 21 O -0.385 6.385 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.093 4.093 25 H 0.100 0.900 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.272 0.728 29 H 0.146 0.854 30 H 0.234 0.766 31 H -0.216 1.216 32 H -0.219 1.219 33 H 0.146 0.854 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.088 0.912 41 H 0.241 0.759 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.072 0.928 46 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.162 -3.858 -1.438 6.603 hybrid contribution 0.144 -0.153 2.206 2.216 sum -5.018 -4.011 0.768 6.470 Atomic orbital electron populations 1.20773 0.88072 1.04397 1.03560 1.20499 0.98420 0.91557 1.01557 1.18460 0.88621 0.85980 0.95793 1.84621 1.75428 1.35642 1.35200 1.20466 0.94231 0.95224 1.05445 1.24831 1.09951 0.93964 0.88314 1.86571 1.82906 1.48344 1.16867 0.94011 0.73429 0.77606 0.89998 1.21077 1.00167 0.91009 0.96278 1.19746 0.94610 0.92338 1.08776 1.18566 0.85661 0.84456 0.76765 1.90763 1.18517 1.86694 1.50491 1.47823 1.18869 1.05891 1.60371 1.22696 0.81865 1.04885 0.99351 1.21163 0.96606 0.81672 0.96886 0.90755 1.21708 0.99978 0.94687 0.98908 1.22213 1.01885 0.96643 0.97814 1.21747 0.84608 0.97458 0.91443 0.91660 1.86472 1.26535 1.72906 1.52576 1.21561 0.98316 0.94527 1.00797 1.21705 1.01950 0.96018 0.95734 1.22343 0.92016 1.00243 0.94715 0.89976 0.90910 0.89333 0.72847 0.85438 0.76600 1.21605 1.21917 0.85414 0.89520 0.89408 0.88898 0.92421 0.89760 0.89628 0.91185 0.75894 0.90932 0.90345 0.90179 0.92848 0.80292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.72 9.78 71.24 0.70 1.42 16 2 C -0.12 0.23 5.89 -19.81 -0.12 0.11 16 3 C 0.16 0.14 6.66 22.63 0.15 0.29 16 4 O -0.50 0.22 11.84 -90.28 -1.07 -0.85 16 5 C -0.15 -0.39 5.27 -19.81 -0.10 -0.50 16 6 C -0.06 -0.13 2.37 71.24 0.17 0.04 16 7 O -0.54 -1.62 12.88 -148.98 -1.92 -3.54 16 8 Si 0.74 2.35 30.26 68.60 2.08 4.43 16 9 C -0.07 -0.34 8.19 22.51 0.18 -0.16 16 10 C -0.15 -0.61 5.56 -20.08 -0.11 -0.72 16 11 C 0.55 4.34 7.51 86.71 0.65 5.00 16 12 O -0.58 -9.53 15.87 -3.96 -0.06 -9.60 16 13 N -0.60 -0.95 2.76 -826.28 -2.28 -3.23 16 14 C 0.05 -0.32 7.71 127.77 0.99 0.67 16 15 C 0.14 0.25 2.52 44.99 0.11 0.36 16 16 H 0.07 0.55 6.92 -2.39 -0.02 0.54 16 17 C -0.11 0.26 5.06 30.60 0.15 0.42 16 18 C -0.15 0.62 5.64 30.60 0.17 0.79 16 19 C 0.11 -0.37 3.77 30.60 0.12 -0.25 16 20 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 21 O -0.58 1.81 11.97 -148.98 -1.78 0.03 16 22 C -0.11 0.11 5.67 30.61 0.17 0.29 16 23 C -0.12 -0.05 5.03 30.61 0.15 0.10 16 24 C -0.08 0.15 7.26 22.50 0.16 0.31 16 25 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 26 H 0.07 -0.34 7.52 -2.39 -0.02 -0.36 16 27 H 0.09 -0.85 8.08 -2.39 -0.02 -0.87 16 28 H 0.41 -2.79 9.06 -74.06 -0.67 -3.46 16 29 H 0.13 0.18 7.82 -2.39 -0.02 0.16 16 30 H 0.38 -0.67 8.70 -74.06 -0.64 -1.31 16 31 H -0.29 -2.61 7.11 99.48 0.71 -1.90 16 32 H -0.29 -2.68 6.67 99.48 0.66 -2.02 16 33 H 0.13 0.96 4.57 -2.91 -0.01 0.95 16 34 H 0.09 -0.89 6.91 -2.39 -0.02 -0.91 16 35 H 0.09 -0.63 6.43 -2.38 -0.02 -0.65 16 36 H 0.09 -0.63 5.38 -2.39 -0.01 -0.65 16 37 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.08 -0.35 7.21 -2.39 -0.02 -0.36 16 39 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 40 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.39 -4.03 9.08 -74.06 -0.67 -4.70 16 42 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.08 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.08 -0.01 6.21 -2.39 -0.01 -0.02 16 45 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.18 -1.34 4.02 -2.91 -0.01 -1.36 16 Total: 0.00 -21.00 356.31 -2.43 -23.44 By element: Atomic # 1 Polarization: -17.91 SS G_CDS: -0.95 Total: -18.85 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 3.55 Total: 8.16 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -2.28 Total: -3.23 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -4.83 Total: -13.95 kcal Atomic # 14 Polarization: 2.35 SS G_CDS: 2.08 Total: 4.43 kcal Total: -21.00 -2.43 -23.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_13287732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.332 kcal (2) G-P(sol) polarization free energy of solvation -21.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds