Wall clock time and date at job start Sun Mar 7 2021 05:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 120.00068 * 2 1 4 4 O 1.21278 * 119.99854 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.00100 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.47442 * 180.02562 * 5 3 2 7 7 C 1.38273 * 119.93310 * 269.72756 * 6 5 3 8 8 C 1.38128 * 120.06573 * 179.76248 * 7 6 5 9 9 C 1.38826 * 119.92879 * 0.52843 * 8 7 6 10 10 N 1.40206 * 120.06413 * 179.69667 * 9 8 7 11 11 C 1.36571 * 125.66209 * 130.05191 * 10 9 8 12 12 C 1.34854 * 108.19488 * 180.02562 * 11 10 9 13 13 C 1.40936 * 107.47012 * 359.97438 * 12 11 10 14 14 C 1.34855 * 107.46732 * 359.73815 * 13 12 11 15 15 C 1.50699 * 125.89757 * 180.25491 * 14 13 12 16 16 O 1.42907 * 109.46962 * 150.20267 * 15 14 13 17 17 Si 1.86294 * 109.47529 * 30.20281 * 15 14 13 18 18 C 1.38832 * 119.87356 * 359.72792 * 9 8 7 19 19 C 1.38121 * 119.92743 * 359.97438 * 18 9 8 20 20 C 1.46501 * 119.99618 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.46884 * 119.19564 * 20 2 1 22 22 C 1.52999 * 109.46978 * 239.19239 * 20 2 1 23 23 C 1.53000 * 109.47471 * 60.00289 * 22 20 2 24 24 C 1.53004 * 109.47220 * 59.99524 * 23 22 20 25 25 H 1.09008 * 109.46422 * 59.99887 * 24 23 22 26 26 O 1.42890 * 109.47246 * 180.02562 * 24 23 22 27 27 C 1.52999 * 109.47287 * 300.00589 * 24 23 22 28 28 C 1.52997 * 109.47267 * 359.19181 * 20 2 1 29 29 H 1.08996 * 109.47213 * 275.92392 * 1 2 3 30 30 H 1.09004 * 109.46484 * 35.92208 * 1 2 3 31 31 H 1.08998 * 109.47109 * 155.92190 * 1 2 3 32 32 H 1.09004 * 109.47376 * 300.00730 * 5 3 2 33 33 H 1.09006 * 109.47280 * 60.00550 * 5 3 2 34 34 H 1.08004 * 119.96807 * 0.02562 * 7 6 5 35 35 H 1.07996 * 120.03570 * 180.25763 * 8 7 6 36 36 H 1.07993 * 125.90390 * 359.97438 * 11 10 9 37 37 H 1.08005 * 126.26453 * 179.97438 * 12 11 10 38 38 H 1.08001 * 126.26856 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.47397 * 270.19537 * 15 14 13 40 40 H 0.96702 * 114.00178 * 179.97438 * 16 15 14 41 41 H 1.48495 * 110.00374 * 59.99606 * 17 15 14 42 42 H 1.48498 * 110.00480 * 181.31879 * 17 15 14 43 43 H 1.08000 * 120.03692 * 179.97438 * 18 9 8 44 44 H 1.08000 * 119.96006 * 180.02562 * 19 18 9 45 45 H 1.09003 * 109.47396 * 180.02562 * 22 20 2 46 46 H 1.08999 * 109.47371 * 300.00127 * 22 20 2 47 47 H 1.08997 * 109.47380 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.46892 * 300.00408 * 23 22 20 49 49 H 0.96710 * 114.00009 * 299.99866 * 26 24 23 50 50 H 1.08998 * 109.47067 * 299.99808 * 27 24 23 51 51 H 1.08993 * 109.47071 * 179.97438 * 27 24 23 52 52 H 1.09003 * 109.47022 * 60.00372 * 28 20 2 53 53 H 1.08998 * 109.47185 * 180.02562 * 28 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3855 2.4722 -0.0006 6 6 2.3648 3.6177 -0.0011 7 6 2.8088 4.1464 1.1969 8 6 3.7101 5.1931 1.1997 9 6 4.1618 5.7214 -0.0020 10 7 5.0717 6.7880 -0.0026 11 6 6.2348 6.8420 -0.7164 12 6 6.8342 8.0217 -0.4561 13 6 6.0133 8.7226 0.4500 14 6 4.9394 7.9480 0.7058 15 6 3.7935 8.2999 1.6192 16 8 2.6011 7.6643 1.1540 17 14 3.5501 10.1469 1.6270 18 6 3.7101 5.1920 -1.2034 19 6 2.8135 4.1413 -1.1996 20 6 2.1975 -1.2688 0.0006 21 1 2.8132 -1.3332 -0.8965 22 6 3.0923 -1.3405 1.2396 23 6 2.2280 -1.2501 2.4988 24 6 1.2338 -2.4129 2.5197 25 1 1.7789 -3.3569 2.5200 26 8 0.4262 -2.3281 3.6954 27 6 0.3390 -2.3411 1.2807 28 6 1.2033 -2.4316 0.0214 29 1 -0.3633 0.1061 1.0221 30 1 -0.3632 0.8323 -0.6030 31 1 -0.3633 -0.9382 -0.4193 32 1 0.7591 2.5298 -0.8908 33 1 0.7586 2.5303 0.8892 34 1 2.4538 3.7377 2.1315 35 1 4.0598 5.6029 2.1357 36 1 6.6101 6.0727 -1.3748 37 1 7.7718 8.3662 -0.8669 38 1 6.2063 9.7027 0.8605 39 1 4.0165 7.9585 2.6300 40 1 1.8211 7.8467 1.6958 41 1 3.2453 10.6249 0.2545 42 1 2.4436 10.5095 2.5485 43 1 4.0594 5.6013 -2.1398 44 1 2.4621 3.7288 -2.1338 45 1 3.6376 -2.2843 1.2398 46 1 3.8005 -0.5122 1.2247 47 1 2.8655 -1.3008 3.3815 48 1 1.6830 -0.3061 2.4984 49 1 0.9283 -2.3671 4.5211 50 1 -0.2059 -1.3971 1.2803 51 1 -0.3689 -3.1697 1.2953 52 1 0.5659 -2.3805 -0.8613 53 1 1.7483 -3.3755 0.0223 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_13287746.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:40:09 Heat of formation + Delta-G solvation = -5.987476 kcal Electronic energy + Delta-G solvation = -34672.207601 eV Core-core repulsion = 30284.356153 eV Total energy + Delta-G solvation = -4387.851449 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.193 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.67433 -41.84248 -40.22299 -39.16850 -37.84609 -37.24511 -35.12307 -34.56201 -32.26536 -32.19336 -31.87242 -31.17934 -30.26872 -27.91904 -27.16812 -26.00387 -24.00817 -23.90437 -23.75765 -22.80493 -21.43254 -21.29834 -20.51142 -19.81299 -18.79717 -18.45002 -18.25828 -17.90797 -17.49280 -17.20857 -16.74431 -16.51736 -16.04096 -15.90314 -15.69638 -15.62555 -15.38219 -14.99274 -14.67864 -14.58586 -14.55090 -14.36852 -14.27265 -14.17077 -13.92162 -13.79083 -13.54553 -13.35202 -13.18497 -13.14560 -13.01206 -12.93744 -12.81115 -12.70251 -12.50890 -12.26823 -12.14106 -12.07599 -11.91991 -11.65331 -11.19073 -10.97326 -10.77702 -10.55640 -10.27799 -10.00191 -9.62291 -9.16148 -9.01067 -4.90575 -0.00187 0.32800 1.03359 1.43102 1.60927 1.61766 1.89704 1.96779 1.98614 2.11042 2.67338 3.20309 3.22115 3.50280 3.61014 3.67292 3.71425 3.72249 3.85574 3.85951 4.03157 4.05222 4.13564 4.15793 4.17360 4.26949 4.29249 4.32828 4.37620 4.41841 4.44500 4.47188 4.48895 4.58616 4.60751 4.61779 4.65960 4.79976 4.85641 4.89904 4.93280 5.02900 5.05210 5.08696 5.10446 5.17019 5.18238 5.24311 5.27856 5.31875 5.35618 5.47356 5.63314 5.77110 5.96410 6.21261 6.37884 6.47798 6.53966 6.80423 7.18063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.605 5.605 3 C 0.512 3.488 4 O -0.572 6.572 5 C -0.095 4.095 6 C -0.068 4.068 7 C -0.096 4.096 8 C -0.097 4.097 9 C 0.123 3.877 10 N -0.400 5.400 11 C -0.031 4.031 12 C -0.196 4.196 13 C -0.198 4.198 14 C 0.011 3.989 15 C -0.061 4.061 16 O -0.550 6.550 17 Si 0.797 3.203 18 C -0.133 4.133 19 C -0.097 4.097 20 C 0.148 3.852 21 H 0.065 0.935 22 C -0.134 4.134 23 C -0.137 4.137 24 C 0.106 3.894 25 H 0.056 0.944 26 O -0.586 6.586 27 C -0.141 4.141 28 C -0.116 4.116 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.093 0.907 40 H 0.393 0.607 41 H -0.311 1.311 42 H -0.276 1.276 43 H 0.124 0.876 44 H 0.140 0.860 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.391 0.609 50 H 0.099 0.901 51 H 0.072 0.928 52 H 0.094 0.906 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 -1.874 2.109 5.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.338 5.338 3 C 0.301 3.699 4 O -0.452 6.452 5 C -0.135 4.135 6 C -0.069 4.069 7 C -0.114 4.114 8 C -0.117 4.117 9 C 0.033 3.967 10 N -0.073 5.073 11 C -0.159 4.159 12 C -0.220 4.220 13 C -0.222 4.222 14 C -0.098 4.098 15 C -0.169 4.169 16 O -0.360 6.360 17 Si 0.700 3.300 18 C -0.153 4.153 19 C -0.116 4.116 20 C 0.045 3.955 21 H 0.083 0.917 22 C -0.172 4.172 23 C -0.175 4.175 24 C 0.047 3.953 25 H 0.074 0.926 26 O -0.394 6.394 27 C -0.177 4.177 28 C -0.153 4.153 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.188 0.812 37 H 0.177 0.823 38 H 0.192 0.808 39 H 0.111 0.889 40 H 0.244 0.756 41 H -0.239 1.239 42 H -0.202 1.202 43 H 0.142 0.858 44 H 0.158 0.842 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.240 0.760 50 H 0.117 0.883 51 H 0.091 0.909 52 H 0.113 0.887 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.466 -1.686 1.067 4.892 hybrid contribution -0.066 -0.745 0.351 0.826 sum -4.532 -2.431 1.418 5.335 Atomic orbital electron populations 1.22478 0.77944 1.05442 1.02756 1.47974 1.07966 1.05003 1.72870 1.20879 0.87625 0.85890 0.75520 1.90702 1.15814 1.87815 1.50821 1.20773 0.97095 0.88059 1.07534 1.19533 0.98084 0.96273 0.93004 1.21004 0.96509 0.95447 0.98463 1.20859 0.98180 0.96387 0.96242 1.17794 0.93991 0.90001 0.94893 1.41613 1.16839 1.12828 1.36044 1.22317 0.88555 1.01965 1.03032 1.21228 1.02517 0.94891 1.03316 1.21019 0.95328 1.01843 1.04022 1.20405 0.99257 0.87957 1.02176 1.24731 0.83319 1.11437 0.97425 1.86636 1.19218 1.72624 1.57475 0.93590 0.86658 0.72112 0.77656 1.21087 0.98904 0.98664 0.96599 1.21008 0.96528 0.95344 0.98684 1.21021 0.93417 0.83426 0.97646 0.91709 1.21849 0.98319 1.02807 0.94231 1.22084 0.97928 0.99541 0.97922 1.21839 0.91130 0.96408 0.85910 0.92648 1.86462 1.38928 1.96988 1.16996 1.22159 0.98330 1.05335 0.91915 1.21778 0.97661 0.97428 0.98462 0.91146 0.89335 0.88359 0.85383 0.85672 0.84228 0.85931 0.81231 0.82265 0.80818 0.88948 0.75641 1.23902 1.20233 0.85791 0.84184 0.90440 0.92140 0.91964 0.92377 0.75962 0.88287 0.90896 0.88741 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.47 8.00 127.77 1.02 0.55 16 2 N -0.60 1.16 2.25 -822.60 -1.85 -0.69 16 3 C 0.51 1.42 7.37 87.66 0.65 2.06 16 4 O -0.57 -6.89 14.08 -3.02 -0.04 -6.93 16 5 C -0.10 0.27 4.46 29.10 0.13 0.40 16 6 C -0.07 -0.22 4.38 -19.85 -0.09 -0.31 16 7 C -0.10 -0.40 9.69 22.25 0.22 -0.18 16 8 C -0.10 -0.68 7.66 22.38 0.17 -0.51 16 9 C 0.12 1.17 4.89 38.08 0.19 1.36 16 10 N -0.40 -3.99 2.87 -333.41 -0.96 -4.94 16 11 C -0.03 -0.26 11.12 83.18 0.93 0.66 16 12 C -0.20 -1.22 10.86 22.15 0.24 -0.98 16 13 C -0.20 -1.01 9.43 22.15 0.21 -0.81 16 14 C 0.01 0.08 6.05 41.05 0.25 0.33 16 15 C -0.06 -0.12 2.28 71.24 0.16 0.04 16 16 O -0.55 -1.96 9.84 -148.98 -1.47 -3.43 16 17 Si 0.80 -0.30 31.15 68.60 2.14 1.84 16 18 C -0.13 -1.10 9.66 22.38 0.22 -0.88 16 19 C -0.10 -0.49 9.69 22.25 0.22 -0.27 16 20 C 0.15 -0.10 2.95 44.99 0.13 0.03 16 21 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 22 C -0.13 -0.25 5.23 30.59 0.16 -0.09 16 23 C -0.14 -0.01 5.39 30.60 0.16 0.16 16 24 C 0.11 -0.16 3.47 30.60 0.11 -0.05 16 25 H 0.06 -0.11 8.14 -2.38 -0.02 -0.13 16 26 O -0.59 -0.34 13.32 -148.98 -1.98 -2.32 16 27 C -0.14 0.56 4.91 30.60 0.15 0.71 16 28 C -0.12 0.65 4.91 30.59 0.15 0.80 16 29 H 0.07 -0.62 6.70 -2.39 -0.02 -0.63 16 30 H 0.09 -1.06 6.69 -2.39 -0.02 -1.08 16 31 H 0.10 -1.02 4.95 -2.39 -0.01 -1.03 16 32 H 0.13 -0.99 7.36 -2.38 -0.02 -1.01 16 33 H 0.13 -0.91 8.05 -2.38 -0.02 -0.93 16 34 H 0.14 0.02 8.06 -2.91 -0.02 0.00 16 35 H 0.12 0.71 7.67 -2.91 -0.02 0.69 16 36 H 0.17 0.90 8.06 -2.91 -0.02 0.87 16 37 H 0.16 0.28 8.06 -2.91 -0.02 0.26 16 38 H 0.17 -0.27 6.90 -2.91 -0.02 -0.29 16 39 H 0.09 -0.18 7.96 -2.39 -0.02 -0.20 16 40 H 0.39 -1.82 8.74 -74.06 -0.65 -2.47 16 41 H -0.31 -2.87 7.11 99.48 0.71 -2.16 16 42 H -0.28 -0.55 7.11 99.48 0.71 0.16 16 43 H 0.12 0.90 8.06 -2.91 -0.02 0.87 16 44 H 0.14 0.14 8.06 -2.91 -0.02 0.12 16 45 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 46 H 0.06 0.52 6.11 -2.39 -0.01 0.50 16 47 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.06 0.12 7.60 -2.39 -0.02 0.10 16 49 H 0.39 -2.35 9.08 -74.05 -0.67 -3.02 16 50 H 0.10 -0.49 3.66 -2.39 -0.01 -0.50 16 51 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 52 H 0.09 -0.78 6.89 -2.39 -0.02 -0.80 16 53 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 Total: 0.00 -25.74 407.63 0.86 -24.87 By element: Atomic # 1 Polarization: -11.09 SS G_CDS: -0.34 Total: -11.43 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.37 Total: 3.03 kcal Atomic # 7 Polarization: -2.82 SS G_CDS: -2.81 Total: -5.63 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -3.49 Total: -12.68 kcal Atomic # 14 Polarization: -0.30 SS G_CDS: 2.14 Total: 1.84 kcal Total: -25.74 0.86 -24.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_13287746.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.887 kcal (2) G-P(sol) polarization free energy of solvation -25.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds