Wall clock time and date at job start Sun Mar 7 2021 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00238 * 2 1 4 4 O 1.21592 * 120.00137 * 184.34674 * 3 2 1 5 5 C 1.47556 * 119.99730 * 4.35095 * 3 2 1 6 6 C 1.39834 * 120.00510 * 147.60001 * 5 3 2 7 7 C 1.36560 * 120.00443 * 180.29664 * 6 5 3 8 8 C 1.39827 * 119.99755 * 359.45379 * 7 6 5 9 9 C 1.47556 * 119.99904 * 180.27608 * 8 7 6 10 10 C 1.34976 * 125.27807 * 359.97438 * 9 8 7 11 11 C 1.37804 * 114.70307 * 179.83243 * 10 9 8 12 12 C 1.33734 * 115.07750 * 0.46464 * 11 10 9 13 13 C 1.50705 * 125.11700 * 179.77746 * 12 11 10 14 14 O 1.42902 * 109.46803 * 299.99620 * 13 12 11 15 15 Si 1.86299 * 109.47162 * 179.97438 * 13 12 11 16 16 S 1.75854 * 109.76656 * 359.74957 * 12 11 10 17 17 C 1.39826 * 120.00021 * 0.55134 * 8 7 6 18 18 C 1.36557 * 120.00224 * 359.72355 * 17 8 7 19 19 C 1.46507 * 120.00137 * 179.97438 * 2 1 3 20 20 H 1.08998 * 109.47047 * 179.97438 * 19 2 1 21 21 C 1.52995 * 109.47326 * 300.00579 * 19 2 1 22 22 C 1.52998 * 109.47196 * 179.97438 * 21 19 2 23 23 C 1.52998 * 109.47082 * 300.00124 * 22 21 19 24 24 H 1.09003 * 109.47344 * 180.02562 * 23 22 21 25 25 O 1.42904 * 109.47139 * 299.99908 * 23 22 21 26 26 C 1.53004 * 109.47395 * 59.99864 * 23 22 21 27 27 C 1.53000 * 109.46541 * 60.00289 * 19 2 1 28 28 H 1.08997 * 109.47043 * 94.96104 * 1 2 3 29 29 H 1.08995 * 109.46990 * 214.95875 * 1 2 3 30 30 H 1.08994 * 109.46895 * 334.95979 * 1 2 3 31 31 H 1.08003 * 119.99825 * 0.02562 * 6 5 3 32 32 H 1.07996 * 120.00283 * 179.72042 * 7 6 5 33 33 H 1.08009 * 122.64716 * 0.02562 * 10 9 8 34 34 H 1.08004 * 122.45807 * 180.21711 * 11 10 9 35 35 H 1.08992 * 109.47519 * 59.99307 * 13 12 11 36 36 H 0.96702 * 114.00276 * 180.02562 * 14 13 12 37 37 H 1.48501 * 109.99616 * 298.67791 * 15 13 12 38 38 H 1.48499 * 110.00156 * 59.99432 * 15 13 12 39 39 H 1.08002 * 119.99731 * 179.75634 * 17 8 7 40 40 H 1.08005 * 120.00276 * 179.97438 * 18 17 8 41 41 H 1.08998 * 109.46955 * 299.99870 * 21 19 2 42 42 H 1.08998 * 109.47241 * 59.99832 * 21 19 2 43 43 H 1.08995 * 109.47256 * 179.97438 * 22 21 19 44 44 H 1.08998 * 109.46914 * 59.99937 * 22 21 19 45 45 H 0.96705 * 113.99793 * 299.99862 * 25 23 22 46 46 H 1.09000 * 109.46958 * 180.02562 * 26 23 22 47 47 H 1.08998 * 109.47131 * 59.99863 * 26 23 22 48 48 H 1.08998 * 109.47452 * 299.99817 * 27 19 2 49 49 H 1.09006 * 109.47309 * 60.00446 * 27 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3522 1.1687 -0.0798 5 6 1.4043 2.4432 0.0969 6 6 1.9830 3.5352 0.7511 7 6 1.3006 4.7143 0.8461 8 6 0.0279 4.8331 0.2793 9 6 -0.7068 6.1090 0.3766 10 6 -0.2540 7.2249 0.9862 11 6 -1.1201 8.2959 0.9443 12 6 -2.2779 8.0643 0.3164 13 6 -3.3864 9.0705 0.1430 14 8 -3.8478 9.4968 1.4266 15 14 -4.7934 8.2888 -0.7951 16 16 -2.3120 6.4093 -0.2770 17 6 -0.5508 3.7412 -0.3748 18 6 0.1292 2.5604 -0.4649 19 6 2.1976 -1.2688 0.0006 20 1 3.2692 -1.0696 0.0000 21 6 1.8279 -2.0706 1.2500 22 6 2.5925 -3.3958 1.2503 23 6 2.2224 -4.1983 0.0013 24 1 2.7667 -5.1427 0.0017 25 8 0.8173 -4.4590 0.0016 26 6 2.5921 -3.3965 -1.2483 27 6 1.8279 -2.0715 -1.2484 28 1 -0.3633 -0.0889 -1.0238 29 1 -0.3633 -0.8422 0.5888 30 1 -0.3633 0.9310 0.4349 31 1 2.9679 3.4449 1.1850 32 1 1.7457 5.5563 1.3552 33 1 0.7124 7.2753 1.4661 34 1 -0.8829 9.2509 1.3895 35 1 -3.0130 9.9304 -0.4128 36 1 -4.5634 10.1463 1.3916 37 1 -4.3341 7.8703 -2.1438 38 1 -5.3117 7.1147 -0.0481 39 1 -1.5355 3.8318 -0.8091 40 1 -0.3180 1.7168 -0.9697 41 1 2.0912 -1.4987 2.1398 42 1 0.7563 -2.2698 1.2501 43 1 2.3295 -3.9669 2.1406 44 1 3.6641 -3.1970 1.2500 45 1 0.5113 -4.9649 0.7668 46 1 2.3280 -3.9681 -2.1380 47 1 3.6637 -3.1976 -1.2485 48 1 0.7563 -2.2707 -1.2484 49 1 2.0913 -1.5003 -2.1386 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_13308390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:40:21 Heat of formation + Delta-G solvation = -34.591265 kcal Electronic energy + Delta-G solvation = -30978.147462 eV Core-core repulsion = 26770.945296 eV Total energy + Delta-G solvation = -4207.202166 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.138 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.92582 -40.46649 -39.61765 -38.93959 -37.43523 -37.20484 -35.21243 -33.56816 -32.47277 -31.89148 -30.96169 -29.76238 -28.24687 -27.15765 -24.74686 -24.34409 -23.81048 -23.40408 -22.88923 -21.05922 -20.59670 -20.21631 -18.75449 -18.45816 -18.27476 -17.93992 -17.57464 -17.22790 -16.71532 -16.60131 -16.25576 -15.78604 -15.73114 -15.63490 -15.41443 -15.01937 -14.80999 -14.67341 -14.50508 -14.33793 -14.20507 -14.19795 -14.08662 -13.63802 -13.36699 -13.28831 -13.24456 -13.21325 -13.05829 -12.85948 -12.67602 -12.45637 -12.25931 -12.14370 -12.10412 -11.83453 -11.50515 -11.31212 -11.12314 -10.82258 -10.70583 -10.34830 -10.22718 -9.79871 -9.71062 -9.11725 -5.24308 -0.97096 0.16850 0.22470 0.31214 0.65024 1.17242 1.42433 1.55310 1.71689 1.84115 1.88418 2.65042 3.23575 3.36007 3.36495 3.43126 3.60516 3.67209 3.71920 3.72670 3.81769 3.91865 4.03217 4.03923 4.14898 4.15831 4.20495 4.31679 4.32430 4.39894 4.42720 4.44077 4.48710 4.51463 4.52076 4.59705 4.73694 4.80897 4.86875 4.89709 4.93562 4.99480 5.00007 5.08106 5.10043 5.11069 5.17992 5.22270 5.22908 5.33257 5.37746 5.44779 5.62966 6.17236 6.83981 6.90289 6.92133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.599 5.599 3 C 0.554 3.446 4 O -0.580 6.580 5 C -0.145 4.145 6 C -0.063 4.063 7 C -0.107 4.107 8 C 0.003 3.997 9 C -0.152 4.152 10 C -0.120 4.120 11 C -0.105 4.105 12 C -0.187 4.187 13 C -0.040 4.040 14 O -0.560 6.560 15 Si 0.751 3.249 16 S 0.077 5.923 17 C -0.127 4.127 18 C -0.083 4.083 19 C 0.139 3.861 20 H 0.077 0.923 21 C -0.117 4.117 22 C -0.146 4.146 23 C 0.106 3.894 24 H 0.068 0.932 25 O -0.578 6.578 26 C -0.114 4.114 27 C -0.115 4.115 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.135 0.865 32 H 0.153 0.847 33 H 0.168 0.832 34 H 0.162 0.838 35 H 0.109 0.891 36 H 0.406 0.594 37 H -0.271 1.271 38 H -0.281 1.281 39 H 0.137 0.863 40 H 0.167 0.833 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.391 0.609 46 H 0.073 0.927 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 1.515 0.966 6.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.329 5.329 3 C 0.344 3.656 4 O -0.461 6.461 5 C -0.149 4.149 6 C -0.082 4.082 7 C -0.127 4.127 8 C 0.000 4.000 9 C -0.269 4.269 10 C -0.150 4.150 11 C -0.135 4.135 12 C -0.304 4.304 13 C -0.152 4.152 14 O -0.371 6.371 15 Si 0.655 3.345 16 S 0.343 5.657 17 C -0.146 4.146 18 C -0.101 4.101 19 C 0.037 3.963 20 H 0.095 0.905 21 C -0.155 4.155 22 C -0.185 4.185 23 C 0.047 3.953 24 H 0.086 0.914 25 O -0.386 6.386 26 C -0.152 4.152 27 C -0.153 4.153 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.153 0.847 32 H 0.171 0.829 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.127 0.873 36 H 0.258 0.742 37 H -0.197 1.197 38 H -0.208 1.208 39 H 0.155 0.845 40 H 0.184 0.816 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.241 0.759 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.060 -0.145 -0.646 6.096 hybrid contribution 1.662 0.522 1.373 2.218 sum -4.399 0.377 0.727 4.474 Atomic orbital electron populations 1.22686 0.77930 1.05198 1.03334 1.47869 1.08236 1.05113 1.71714 1.18607 0.86653 0.84563 0.75733 1.90767 1.15381 1.87800 1.52124 1.19974 0.96211 0.94116 1.04556 1.20984 0.99649 0.91448 0.96139 1.21074 0.93256 0.98424 0.99951 1.18448 0.93745 0.90694 0.97071 1.23176 0.98354 0.97857 1.07489 1.20707 1.02322 0.91192 1.00765 1.20245 0.92304 1.01299 0.99681 1.24116 1.00620 0.97196 1.08464 1.24099 1.00121 0.99249 0.91758 1.86455 1.58635 1.65552 1.26430 0.94017 0.81843 0.82301 0.76360 1.84240 1.15676 1.08151 1.57620 1.21083 1.00921 0.92364 1.00182 1.21687 0.92329 0.98695 0.97368 1.21169 0.96770 0.82090 0.96301 0.90513 1.21716 1.01955 0.95742 0.96070 1.22207 1.01009 0.96065 0.99192 1.21761 0.82207 0.97056 0.94229 0.91430 1.86478 1.23251 1.78216 1.50660 1.21551 1.00413 0.95202 0.98014 1.21677 1.01830 0.95514 0.96289 0.90376 0.89508 0.88567 0.84720 0.82895 0.81503 0.82035 0.87343 0.74161 1.19696 1.20754 0.84543 0.81556 0.92566 0.90059 0.89622 0.90949 0.75910 0.90846 0.90158 0.90471 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.14 7.88 127.77 1.01 0.87 16 2 N -0.60 -2.36 2.76 -826.34 -2.28 -4.64 16 3 C 0.55 5.30 7.42 86.70 0.64 5.95 16 4 O -0.58 -10.10 16.09 -4.01 -0.06 -10.17 16 5 C -0.15 -0.87 5.47 -20.05 -0.11 -0.98 16 6 C -0.06 -0.34 9.54 22.26 0.21 -0.13 16 7 C -0.11 -0.32 9.48 22.26 0.21 -0.11 16 8 C 0.00 0.01 5.88 -20.05 -0.12 -0.11 16 9 C -0.15 -0.73 6.37 23.98 0.15 -0.58 16 10 C -0.12 -0.31 9.64 21.42 0.21 -0.11 16 11 C -0.11 -0.31 10.00 21.14 0.21 -0.10 16 12 C -0.19 -0.77 5.76 24.66 0.14 -0.63 16 13 C -0.04 0.06 2.95 71.24 0.21 0.27 16 14 O -0.56 0.89 12.83 -148.98 -1.91 -1.02 16 15 Si 0.75 -1.67 30.96 68.60 2.12 0.45 16 16 S 0.08 0.43 19.46 -56.49 -1.10 -0.67 16 17 C -0.13 -0.33 9.54 22.26 0.21 -0.12 16 18 C -0.08 -0.14 7.36 22.26 0.16 0.03 16 19 C 0.14 0.50 2.52 44.99 0.11 0.62 16 20 H 0.08 0.67 6.91 -2.39 -0.02 0.66 16 21 C -0.12 0.01 5.03 30.59 0.15 0.16 16 22 C -0.15 0.41 5.64 30.59 0.17 0.58 16 23 C 0.11 -0.24 3.77 30.59 0.12 -0.13 16 24 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 25 O -0.58 0.94 11.97 -148.98 -1.78 -0.85 16 26 C -0.11 -0.01 5.66 30.58 0.17 0.16 16 27 C -0.11 -0.22 5.06 30.58 0.15 -0.07 16 28 H 0.08 -0.42 7.45 -2.39 -0.02 -0.43 16 29 H 0.09 -0.40 6.45 -2.39 -0.02 -0.42 16 30 H 0.10 -0.34 4.70 -2.39 -0.01 -0.35 16 31 H 0.13 0.74 7.95 -2.91 -0.02 0.71 16 32 H 0.15 -0.25 6.74 -2.91 -0.02 -0.27 16 33 H 0.17 -0.38 6.88 -2.91 -0.02 -0.40 16 34 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16 35 H 0.11 -0.67 7.96 -2.39 -0.02 -0.69 16 36 H 0.41 -5.02 8.74 -74.06 -0.65 -5.67 16 37 H -0.27 -0.79 7.11 99.48 0.71 -0.09 16 38 H -0.28 -1.47 7.11 99.48 0.71 -0.76 16 39 H 0.14 0.05 7.26 -2.91 -0.02 0.03 16 40 H 0.17 -0.53 4.83 -2.91 -0.01 -0.55 16 41 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.08 -0.11 6.23 -2.39 -0.01 -0.13 16 43 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.39 -3.43 9.08 -74.05 -0.67 -4.10 16 46 H 0.07 0.03 8.14 -2.39 -0.02 0.01 16 47 H 0.08 -0.04 8.14 -2.39 -0.02 -0.05 16 48 H 0.08 0.14 7.21 -2.39 -0.02 0.13 16 49 H 0.05 0.22 8.14 -2.38 -0.02 0.20 16 Total: 0.00 -23.16 396.70 -1.26 -24.43 By element: Atomic # 1 Polarization: -12.85 SS G_CDS: -0.28 Total: -13.13 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 4.03 Total: 5.58 kcal Atomic # 7 Polarization: -2.36 SS G_CDS: -2.28 Total: -4.64 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -3.76 Total: -12.03 kcal Atomic # 14 Polarization: -1.67 SS G_CDS: 2.12 Total: 0.45 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -1.10 Total: -0.67 kcal Total: -23.16 -1.26 -24.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_13308390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.165 kcal (2) G-P(sol) polarization free energy of solvation -23.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds