Wall clock time and date at job start Sun Mar 7 2021 05:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00302 * 2 1 4 4 C 1.39043 * 111.00101 * 236.04513 * 2 1 3 5 5 C 1.39199 * 119.93314 * 240.00203 * 4 2 1 6 6 C 1.50701 * 119.96285 * 359.97438 * 5 4 2 7 7 O 1.42907 * 109.47207 * 75.00041 * 6 5 4 8 8 Si 1.86302 * 109.47236 * 194.99699 * 6 5 4 9 9 C 1.37627 * 120.07210 * 180.02562 * 5 4 2 10 10 C 1.39775 * 119.92933 * 359.97438 * 9 5 4 11 11 C 1.47516 * 120.07148 * 180.02562 * 10 9 5 12 12 O 1.21598 * 119.99902 * 327.76835 * 11 10 9 13 13 N 1.34777 * 120.00276 * 147.76471 * 11 10 9 14 14 C 1.46495 * 119.99849 * 4.33835 * 13 11 10 15 15 C 1.46502 * 119.99911 * 184.33794 * 13 11 10 16 16 H 1.09003 * 109.47472 * 0.02562 * 15 13 11 17 17 C 1.53004 * 109.46851 * 120.00115 * 15 13 11 18 18 C 1.53000 * 109.46763 * 180.02562 * 17 15 13 19 19 C 1.53009 * 109.47046 * 299.99557 * 18 17 15 20 20 H 1.08996 * 109.46973 * 180.02562 * 19 18 17 21 21 O 1.42894 * 109.46897 * 300.00324 * 19 18 17 22 22 C 1.53001 * 109.46798 * 60.00250 * 19 18 17 23 23 C 1.52993 * 109.47038 * 239.99917 * 15 13 11 24 24 C 1.39816 * 119.86264 * 359.97438 * 10 9 5 25 25 C 1.37589 * 119.93252 * 359.74403 * 24 10 9 26 26 H 1.09000 * 109.47780 * 183.95291 * 1 2 3 27 27 H 1.09005 * 109.47191 * 63.95506 * 1 2 3 28 28 H 1.09002 * 109.47338 * 303.95813 * 1 2 3 29 29 H 1.09001 * 109.47165 * 56.04636 * 3 2 1 30 30 H 1.09000 * 109.47359 * 176.04309 * 3 2 1 31 31 H 1.08998 * 109.47110 * 296.04478 * 3 2 1 32 32 H 1.08997 * 109.47628 * 315.00138 * 6 5 4 33 33 H 0.96703 * 113.99921 * 300.00232 * 7 6 5 34 34 H 1.48502 * 110.00059 * 298.68762 * 8 6 5 35 35 H 1.48500 * 109.99547 * 60.00043 * 8 6 5 36 36 H 1.08000 * 120.03844 * 179.97438 * 9 5 4 37 37 H 1.09000 * 109.47153 * 94.80990 * 14 13 11 38 38 H 1.09010 * 109.46819 * 214.80771 * 14 13 11 39 39 H 1.09001 * 109.47374 * 334.80645 * 14 13 11 40 40 H 1.09003 * 109.46935 * 299.99326 * 17 15 13 41 41 H 1.08992 * 109.47265 * 60.00201 * 17 15 13 42 42 H 1.09007 * 109.47073 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.47570 * 59.99676 * 18 17 15 44 44 H 0.96698 * 114.00681 * 299.99910 * 21 19 18 45 45 H 1.09001 * 109.46644 * 179.97438 * 22 19 18 46 46 H 1.09003 * 109.46741 * 60.00156 * 22 19 18 47 47 H 1.09009 * 109.47406 * 300.00076 * 23 15 13 48 48 H 1.09000 * 109.47214 * 60.00108 * 23 15 13 49 49 H 1.08005 * 120.03612 * 180.02562 * 24 10 9 50 50 H 1.07997 * 119.97077 * 180.24614 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9672 -0.7250 -1.0767 5 6 2.7792 -1.8330 -0.8518 6 6 3.1173 -2.2446 0.5580 7 8 1.9823 -2.8745 1.1555 8 14 4.5471 -3.4387 0.5303 9 6 3.2744 -2.5524 -1.9154 10 6 2.9608 -2.1697 -3.2227 11 6 3.4894 -2.9389 -4.3651 12 8 4.5772 -3.4764 -4.2849 13 7 2.7668 -3.0459 -5.4976 14 6 1.5006 -2.3211 -5.6299 15 6 3.2475 -3.8872 -6.5965 16 1 4.1975 -4.3426 -6.3167 17 6 2.2214 -4.9850 -6.8848 18 6 2.7238 -5.8639 -8.0320 19 6 2.9185 -5.0062 -9.2841 20 1 3.2759 -5.6325 -10.1014 21 8 1.6729 -4.4097 -9.6511 22 6 3.9444 -3.9084 -8.9957 23 6 3.4417 -3.0292 -7.8482 24 6 2.1441 -1.0569 -3.4453 25 6 1.6474 -0.3453 -2.3777 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3634 0.4512 -0.9233 28 1 -0.3634 0.5740 0.8524 29 1 1.5898 1.9164 0.8524 30 1 3.0828 1.3432 0.0709 31 1 1.7044 1.8723 -0.9233 32 1 3.3911 -1.3634 1.1381 33 1 1.1988 -2.3097 1.2033 34 1 4.1755 -4.6585 -0.2308 35 1 5.7338 -2.7957 -0.0888 36 1 3.9047 -3.4118 -1.7403 37 1 1.6763 -1.3722 -6.1367 38 1 0.7986 -2.9190 -6.2113 39 1 1.0846 -2.1328 -4.6401 40 1 2.0831 -5.5963 -5.9930 41 1 1.2714 -4.5299 -7.1644 42 1 1.9926 -6.6458 -8.2377 43 1 3.6738 -6.3190 -7.7520 44 1 0.9740 -5.0481 -9.8485 45 1 4.0834 -3.2978 -9.8878 46 1 4.8945 -4.3636 -8.7157 47 1 2.4915 -2.5741 -8.1279 48 1 4.1726 -2.2471 -7.6429 49 1 1.8996 -0.7589 -4.4542 50 1 1.0132 0.5120 -2.5488 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_13422196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:40:35 Heat of formation + Delta-G solvation = -56.700773 kcal Electronic energy + Delta-G solvation = -30579.594939 eV Core-core repulsion = 26574.222818 eV Total energy + Delta-G solvation = -4005.372121 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 335.193 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.17065 -41.04705 -39.79325 -37.75197 -37.51512 -37.23772 -35.12181 -33.01112 -31.93004 -31.62242 -29.99127 -28.58329 -28.31938 -26.83524 -26.27327 -23.87160 -23.83370 -23.13044 -22.38144 -20.90775 -20.59754 -18.83453 -18.31629 -17.91845 -17.80205 -17.56503 -17.12251 -16.79133 -16.43912 -16.22741 -16.03458 -15.73936 -15.52787 -15.34933 -15.07982 -14.75821 -14.55102 -14.38858 -14.26328 -14.12937 -13.89594 -13.71621 -13.44752 -13.36600 -13.29174 -13.10859 -13.08303 -12.78443 -12.66693 -12.57589 -12.45113 -12.39458 -12.14876 -11.56433 -11.47450 -11.34258 -11.20868 -11.03035 -10.74481 -10.26278 -9.96995 -9.81570 -9.63081 -4.96513 -0.50236 -0.02787 1.27476 1.38821 1.54736 1.68864 1.86925 2.35774 2.66702 3.19571 3.33069 3.41701 3.52191 3.59559 3.65584 3.79703 3.87687 3.92054 3.98465 4.02031 4.05706 4.11512 4.13852 4.28024 4.34133 4.35924 4.37300 4.39674 4.40205 4.46666 4.54240 4.56656 4.59473 4.64323 4.69543 4.82514 4.87928 4.89733 4.95832 4.96322 4.96980 4.99276 5.05473 5.05938 5.09169 5.18340 5.28341 5.35070 5.41962 5.75613 6.07821 6.13953 6.65051 6.81378 6.88761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.522 5.522 3 C 0.025 3.975 4 C 0.132 3.868 5 C -0.111 4.111 6 C -0.061 4.061 7 O -0.542 6.542 8 Si 0.796 3.204 9 C -0.083 4.083 10 C -0.146 4.146 11 C 0.550 3.450 12 O -0.586 6.586 13 N -0.596 5.596 14 C 0.049 3.951 15 C 0.138 3.862 16 H 0.072 0.928 17 C -0.116 4.116 18 C -0.147 4.147 19 C 0.107 3.893 20 H 0.069 0.931 21 O -0.577 6.577 22 C -0.114 4.114 23 C -0.113 4.113 24 C -0.074 4.074 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.097 0.903 33 H 0.375 0.625 34 H -0.301 1.301 35 H -0.279 1.279 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.392 0.608 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.053 0.947 49 H 0.173 0.827 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 4.021 -0.828 7.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.244 5.244 3 C -0.121 4.121 4 C 0.037 3.963 5 C -0.112 4.112 6 C -0.171 4.171 7 O -0.349 6.349 8 Si 0.702 3.298 9 C -0.102 4.102 10 C -0.149 4.149 11 C 0.341 3.659 12 O -0.468 6.468 13 N -0.326 5.326 14 C -0.092 4.092 15 C 0.035 3.965 16 H 0.090 0.910 17 C -0.155 4.155 18 C -0.185 4.185 19 C 0.049 3.951 20 H 0.086 0.914 21 O -0.385 6.385 22 C -0.152 4.152 23 C -0.151 4.151 24 C -0.092 4.092 25 C -0.166 4.166 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.114 0.886 33 H 0.224 0.776 34 H -0.230 1.230 35 H -0.206 1.206 36 H 0.125 0.875 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.115 0.885 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.088 0.912 44 H 0.241 0.759 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.072 0.928 49 H 0.190 0.810 50 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.802 3.166 -0.691 5.793 hybrid contribution -1.093 0.538 -1.658 2.058 sum -5.895 3.705 -2.349 7.348 Atomic orbital electron populations 1.22617 0.83744 1.03410 1.02643 1.59448 1.10041 1.15252 1.39669 1.22546 1.00838 0.86212 1.02500 1.18917 0.94462 0.92736 0.90187 1.20308 0.99095 0.95811 0.95995 1.25002 0.97039 1.05737 0.89308 1.86679 1.22728 1.43523 1.81993 0.92888 0.74005 0.75789 0.87155 1.20962 0.98114 0.98871 0.92303 1.19806 1.03045 0.99653 0.92388 1.18644 0.84116 0.79944 0.83245 1.90767 1.22723 1.50250 1.83074 1.47860 1.23056 1.47185 1.14514 1.22736 0.84346 0.97623 1.04472 1.21200 0.98264 0.91247 0.85784 0.90979 1.21719 0.99236 0.96174 0.98322 1.22219 1.02753 0.98320 0.95232 1.21740 0.84916 0.93474 0.95007 0.91353 1.86467 1.22289 1.38985 1.90732 1.21569 0.97813 0.97382 0.98452 1.21679 1.02305 0.97789 0.93312 1.22019 0.93082 0.92212 1.01920 1.21940 1.01560 1.01158 0.91946 0.90969 0.93794 0.88896 0.88869 0.91811 0.93909 0.88558 0.77551 1.22958 1.20595 0.87524 0.89867 0.89301 0.88526 0.92977 0.89668 0.89514 0.91199 0.75851 0.90605 0.90381 0.90083 0.92802 0.81038 0.82234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.15 9.20 127.69 1.17 1.03 16 2 N -0.52 1.51 3.67 -745.10 -2.73 -1.22 16 3 C 0.02 -0.13 9.38 127.69 1.20 1.07 16 4 C 0.13 0.14 4.66 38.47 0.18 0.32 16 5 C -0.11 -0.70 5.28 -19.78 -0.10 -0.81 16 6 C -0.06 -0.28 2.29 71.24 0.16 -0.12 16 7 O -0.54 -2.66 12.65 -148.98 -1.89 -4.54 16 8 Si 0.80 5.27 30.40 68.60 2.09 7.36 16 9 C -0.08 -0.93 8.20 22.50 0.18 -0.74 16 10 C -0.15 -1.20 5.47 -20.08 -0.11 -1.31 16 11 C 0.55 6.65 7.42 86.69 0.64 7.29 16 12 O -0.59 -12.41 16.09 -4.03 -0.06 -12.47 16 13 N -0.60 -2.87 2.76 -826.36 -2.28 -5.15 16 14 C 0.05 -0.17 7.88 127.77 1.01 0.83 16 15 C 0.14 0.63 2.52 44.99 0.11 0.74 16 16 H 0.07 0.76 6.91 -2.39 -0.02 0.75 16 17 C -0.12 -0.08 5.02 30.60 0.15 0.07 16 18 C -0.15 0.31 5.64 30.60 0.17 0.49 16 19 C 0.11 -0.23 3.77 30.60 0.12 -0.12 16 20 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 21 O -0.58 1.16 11.97 -148.98 -1.78 -0.63 16 22 C -0.11 -0.03 5.67 30.61 0.17 0.15 16 23 C -0.11 -0.22 5.06 30.61 0.15 -0.07 16 24 C -0.07 -0.01 7.41 22.50 0.17 0.16 16 25 C -0.15 0.29 8.53 22.36 0.19 0.48 16 26 H 0.07 -0.44 7.84 -2.39 -0.02 -0.46 16 27 H 0.04 -0.35 7.08 -2.38 -0.02 -0.37 16 28 H 0.09 -0.82 8.12 -2.39 -0.02 -0.84 16 29 H 0.09 -0.70 8.12 -2.39 -0.02 -0.72 16 30 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.04 -0.27 7.33 -2.39 -0.02 -0.29 16 32 H 0.10 0.16 7.78 -2.39 -0.02 0.14 16 33 H 0.38 0.05 8.06 -74.06 -0.60 -0.55 16 34 H -0.30 -4.37 6.81 99.48 0.68 -3.70 16 35 H -0.28 -3.19 7.11 99.48 0.71 -2.49 16 36 H 0.11 1.70 4.81 -2.91 -0.01 1.69 16 37 H 0.08 -0.58 7.44 -2.39 -0.02 -0.60 16 38 H 0.09 -0.49 6.45 -2.38 -0.02 -0.51 16 39 H 0.10 -0.46 4.70 -2.39 -0.01 -0.47 16 40 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.08 -0.12 6.23 -2.39 -0.01 -0.13 16 42 H 0.09 -0.44 8.14 -2.38 -0.02 -0.46 16 43 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 44 H 0.39 -3.59 9.08 -74.06 -0.67 -4.26 16 45 H 0.08 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 47 H 0.08 0.10 7.21 -2.38 -0.02 0.08 16 48 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 49 H 0.17 -0.95 4.82 -2.91 -0.01 -0.96 16 50 H 0.16 -1.19 6.99 -2.91 -0.02 -1.22 16 Total: 0.00 -21.38 378.98 -1.38 -22.76 By element: Atomic # 1 Polarization: -15.27 SS G_CDS: -0.29 Total: -15.56 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 5.58 Total: 9.46 kcal Atomic # 7 Polarization: -1.36 SS G_CDS: -5.01 Total: -6.37 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -3.73 Total: -17.64 kcal Atomic # 14 Polarization: 5.27 SS G_CDS: 2.09 Total: 7.36 kcal Total: -21.38 -1.38 -22.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_13422196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.942 kcal (2) G-P(sol) polarization free energy of solvation -21.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds