Wall clock time and date at job start Sun Mar 7 2021 05:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34773 * 120.00321 * 2 1 4 4 O 1.21611 * 120.00569 * 186.89231 * 3 2 1 5 5 C 1.47387 * 119.99677 * 6.89001 * 3 2 1 6 6 C 1.36415 * 127.19248 * 187.05552 * 5 3 2 7 7 O 1.33648 * 108.39802 * 179.97438 * 6 5 3 8 8 C 1.34215 * 110.91050 * 0.02562 * 7 6 5 9 9 C 1.50691 * 125.43957 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.47229 * 244.97103 * 9 8 7 11 11 Si 1.86301 * 109.47463 * 4.97261 * 9 8 7 12 12 C 1.34180 * 109.11983 * 359.74370 * 8 7 6 13 13 C 1.46504 * 119.99991 * 180.02562 * 2 1 3 14 14 H 1.08998 * 109.47439 * 110.06000 * 13 2 1 15 15 C 1.52999 * 109.47027 * 230.05973 * 13 2 1 16 16 C 1.53007 * 109.46925 * 60.00024 * 15 13 2 17 17 C 1.52999 * 109.47217 * 59.99894 * 16 15 13 18 18 H 1.09004 * 109.46882 * 59.99760 * 17 16 15 19 19 O 1.42898 * 109.47040 * 180.02562 * 17 16 15 20 20 C 1.53005 * 109.46879 * 300.00226 * 17 16 15 21 21 C 1.52994 * 109.47340 * 60.00061 * 20 17 16 22 22 H 1.08993 * 109.46884 * 275.34568 * 1 2 3 23 23 H 1.08997 * 109.46947 * 35.34919 * 1 2 3 24 24 H 1.08996 * 109.46792 * 155.34528 * 1 2 3 25 25 H 1.08005 * 125.80179 * 359.96916 * 6 5 3 26 26 H 1.09010 * 109.47267 * 124.97427 * 9 8 7 27 27 H 0.96704 * 113.99796 * 59.99927 * 10 9 8 28 28 H 1.48497 * 110.00250 * 179.97438 * 11 9 8 29 29 H 1.48494 * 110.00006 * 301.32299 * 11 9 8 30 30 H 1.08002 * 127.02403 * 180.26084 * 12 8 7 31 31 H 1.09003 * 109.46880 * 179.97438 * 15 13 2 32 32 H 1.08999 * 109.47053 * 300.00153 * 15 13 2 33 33 H 1.08996 * 109.46732 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47057 * 299.99543 * 16 15 13 35 35 H 0.96701 * 114.00095 * 299.99420 * 19 17 16 36 36 H 1.09004 * 109.46983 * 299.99472 * 20 17 16 37 37 H 1.09008 * 109.46718 * 180.02562 * 20 17 16 38 38 H 1.09003 * 109.47230 * 60.00189 * 21 20 17 39 39 H 1.09001 * 109.47330 * 179.97438 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3485 1.1710 -0.1264 5 6 1.4100 2.4389 0.1531 6 6 1.9189 3.6997 0.0416 7 8 0.9298 4.5738 0.2506 8 6 -0.2262 3.9388 0.4993 9 6 -1.5475 4.6069 0.7794 10 8 -1.9572 4.3109 2.1159 11 14 -1.3662 6.4502 0.5793 12 6 -0.0186 2.6139 0.4527 13 6 2.1975 -1.2688 -0.0006 14 1 2.6845 -1.4068 -0.9659 15 6 3.2545 -1.2479 1.1054 16 6 2.5709 -1.0542 2.4605 17 6 1.5954 -2.2064 2.7090 18 1 2.1405 -3.1504 2.7086 19 8 0.9566 -2.0251 3.9743 20 6 0.5385 -2.2272 1.6029 21 6 1.2220 -2.4210 0.2479 22 1 -0.3633 0.0957 1.0231 23 1 -0.3633 0.8382 -0.5946 24 1 -0.3633 -0.9340 -0.4287 25 1 2.9465 3.9491 -0.1782 26 1 -2.2971 4.2375 0.0794 27 1 -1.3361 4.6117 2.7934 28 1 -2.6627 7.1208 0.8522 29 1 -0.3244 6.9616 1.5058 30 1 -0.7511 1.8351 0.6058 31 1 3.7992 -2.1921 1.1053 32 1 3.9494 -0.4270 0.9284 33 1 3.3240 -1.0389 3.2484 34 1 2.0260 -0.1102 2.4609 35 1 1.5675 -2.0019 4.7236 36 1 -0.0065 -1.2832 1.6033 37 1 -0.1568 -3.0479 1.7802 38 1 1.7670 -3.3650 0.2475 39 1 0.4690 -2.4363 -0.5401 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_13456056.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:40:48 Heat of formation + Delta-G solvation = -67.577405 kcal Electronic energy + Delta-G solvation = -23653.024461 eV Core-core repulsion = 20144.301029 eV Total energy + Delta-G solvation = -3508.723431 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 282.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.75802 -41.67732 -39.33260 -38.13109 -37.28640 -35.33839 -33.58015 -32.20020 -31.77548 -30.25286 -27.85840 -26.55968 -25.06441 -23.84925 -22.89814 -22.44675 -20.71673 -19.99585 -18.77715 -18.26733 -17.96951 -17.56976 -17.40046 -17.22384 -16.91816 -16.23003 -15.79241 -15.73907 -15.53886 -14.85532 -14.64283 -14.48511 -14.24201 -14.12407 -13.86590 -13.81683 -13.45224 -13.27711 -12.93917 -12.75244 -12.50948 -12.22723 -12.16556 -11.99437 -11.76340 -11.30026 -11.08661 -10.85762 -10.76874 -10.53184 -9.89594 -9.56836 -4.93209 0.27217 0.83758 1.18242 1.50646 1.75686 1.91834 1.96881 2.22064 3.18815 3.20979 3.36544 3.52411 3.65965 3.76903 3.91630 4.00452 4.02918 4.12593 4.19219 4.23194 4.29908 4.35662 4.42435 4.44941 4.52428 4.56096 4.60072 4.76945 4.88889 4.91732 5.02333 5.04805 5.07720 5.10112 5.15107 5.22829 5.32645 5.60344 5.86765 6.30437 6.33682 6.78482 7.07552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.596 5.596 3 C 0.584 3.416 4 O -0.576 6.576 5 C -0.265 4.265 6 C 0.065 3.935 7 O -0.171 6.171 8 C -0.057 4.057 9 C -0.034 4.034 10 O -0.535 6.535 11 Si 0.772 3.228 12 C -0.162 4.162 13 C 0.147 3.853 14 H 0.073 0.927 15 C -0.138 4.138 16 C -0.138 4.138 17 C 0.105 3.895 18 H 0.063 0.937 19 O -0.587 6.587 20 C -0.131 4.131 21 C -0.116 4.116 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.100 0.900 25 H 0.235 0.765 26 H 0.160 0.840 27 H 0.389 0.611 28 H -0.284 1.284 29 H -0.297 1.297 30 H 0.186 0.814 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.391 0.609 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 -1.298 -2.332 3.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.328 5.328 3 C 0.375 3.625 4 O -0.458 6.458 5 C -0.270 4.270 6 C -0.006 4.006 7 O -0.067 6.067 8 C -0.106 4.106 9 C -0.143 4.143 10 O -0.343 6.343 11 Si 0.676 3.324 12 C -0.181 4.181 13 C 0.045 3.955 14 H 0.091 0.909 15 C -0.176 4.176 16 C -0.176 4.176 17 C 0.047 3.953 18 H 0.080 0.920 19 O -0.395 6.395 20 C -0.168 4.168 21 C -0.154 4.154 22 H 0.086 0.914 23 H 0.106 0.894 24 H 0.118 0.882 25 H 0.251 0.749 26 H 0.177 0.823 27 H 0.239 0.761 28 H -0.211 1.211 29 H -0.224 1.224 30 H 0.203 0.797 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.240 0.760 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.002 -0.504 -2.700 4.069 hybrid contribution 1.149 -0.486 1.665 2.080 sum -1.853 -0.990 -1.035 2.342 Atomic orbital electron populations 1.22806 0.78434 1.05370 1.02269 1.47679 1.07795 1.04968 1.72326 1.17469 0.85882 0.83370 0.75737 1.90725 1.15169 1.87677 1.52267 1.21508 0.95455 0.94092 1.15932 1.24824 0.93445 0.86250 0.96106 1.83742 1.16712 1.37920 1.68352 1.22956 0.87791 0.92236 1.07571 1.24527 0.90355 1.12321 0.87099 1.86642 1.50386 1.82354 1.14930 0.93559 0.77002 0.71456 0.90364 1.23468 0.94586 0.96523 1.03525 1.21146 0.92892 0.82790 0.98722 0.90920 1.21917 0.98402 1.03630 0.93663 1.22090 0.98660 0.99146 0.97716 1.21873 0.93225 0.96385 0.83837 0.91956 1.86467 1.39617 1.96346 1.17111 1.21920 0.97868 1.04309 0.92745 1.21830 0.98847 0.97531 0.97143 0.91384 0.89389 0.88187 0.74929 0.82296 0.76080 1.21050 1.22364 0.79733 0.89617 0.91245 0.91818 0.93446 0.76005 0.89887 0.90684 0.88693 0.88557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.23 6.66 127.77 0.85 0.62 16 2 N -0.60 -0.86 2.33 -826.53 -1.93 -2.79 16 3 C 0.58 3.99 6.85 86.65 0.59 4.58 16 4 O -0.58 -7.62 14.64 -4.07 -0.06 -7.68 16 5 C -0.27 -0.92 6.06 -18.99 -0.12 -1.04 16 6 C 0.06 0.09 11.91 67.39 0.80 0.89 16 7 O -0.17 -0.12 8.90 4.51 0.04 -0.08 16 8 C -0.06 0.05 6.18 24.76 0.15 0.20 16 9 C -0.03 0.12 2.97 71.23 0.21 0.33 16 10 O -0.53 0.42 12.88 -148.98 -1.92 -1.50 16 11 Si 0.77 -2.17 32.09 68.60 2.20 0.03 16 12 C -0.16 0.05 8.76 23.65 0.21 0.26 16 13 C 0.15 0.05 3.08 44.99 0.14 0.19 16 14 H 0.07 0.11 8.14 -2.39 -0.02 0.10 16 15 C -0.14 -0.37 5.09 30.60 0.16 -0.21 16 16 C -0.14 -0.32 5.37 30.60 0.16 -0.15 16 17 C 0.11 0.02 3.47 30.60 0.11 0.13 16 18 H 0.06 -0.09 8.14 -2.38 -0.02 -0.11 16 19 O -0.59 -1.63 13.32 -148.98 -1.98 -3.61 16 20 C -0.13 0.27 5.12 30.59 0.16 0.43 16 21 C -0.12 0.56 4.90 30.59 0.15 0.71 16 22 H 0.07 -0.29 5.54 -2.39 -0.01 -0.30 16 23 H 0.09 -0.48 5.35 -2.39 -0.01 -0.49 16 24 H 0.10 -0.80 5.53 -2.39 -0.01 -0.81 16 25 H 0.23 -0.63 8.06 -2.91 -0.02 -0.65 16 26 H 0.16 -1.27 7.96 -2.38 -0.02 -1.29 16 27 H 0.39 -2.01 8.70 -74.05 -0.64 -2.65 16 28 H -0.28 -0.85 7.11 99.48 0.71 -0.15 16 29 H -0.30 -1.17 7.11 99.48 0.71 -0.47 16 30 H 0.19 -0.71 4.87 -2.91 -0.01 -0.73 16 31 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.07 0.63 5.72 -2.39 -0.01 0.61 16 33 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.05 0.31 7.26 -2.39 -0.02 0.29 16 35 H 0.39 -1.57 9.08 -74.06 -0.67 -2.24 16 36 H 0.08 -0.11 4.18 -2.38 -0.01 -0.12 16 37 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 38 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.10 -0.75 6.53 -2.39 -0.02 -0.77 16 Total: 0.00 -19.00 302.44 -0.25 -19.24 By element: Atomic # 1 Polarization: -10.39 SS G_CDS: -0.17 Total: -10.56 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 3.58 Total: 6.95 kcal Atomic # 7 Polarization: -0.86 SS G_CDS: -1.93 Total: -2.79 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -3.92 Total: -12.87 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.20 Total: 0.03 kcal Total: -19.00 -0.25 -19.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_13456056.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.337 kcal (2) G-P(sol) polarization free energy of solvation -18.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds