Wall clock time and date at job start Sun Mar 7 2021 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34785 * 119.99776 * 2 1 4 4 O 1.21273 * 119.99993 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99615 * 0.02562 * 3 2 1 6 6 C 1.53007 * 109.46777 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47211 * 179.97438 * 6 5 3 8 8 O 1.42892 * 109.47243 * 180.02562 * 7 6 5 9 9 C 1.35904 * 117.00146 * 180.02562 * 8 7 6 10 10 C 1.38708 * 120.05818 * 179.97438 * 9 8 7 11 11 C 1.38161 * 119.94465 * 180.02562 * 10 9 8 12 12 C 1.50707 * 119.97000 * 180.02562 * 11 10 9 13 13 O 1.42897 * 109.47036 * 299.99768 * 12 11 10 14 14 Si 1.86310 * 109.46796 * 179.97438 * 12 11 10 15 15 C 1.38247 * 120.06012 * 359.97438 * 11 10 9 16 16 C 1.38285 * 120.10420 * 359.97438 * 15 11 10 17 17 C 1.38129 * 120.06052 * 359.76524 * 16 15 11 18 18 C 1.46492 * 120.00374 * 180.02562 * 2 1 3 19 19 H 1.09002 * 109.47696 * 179.97438 * 18 2 1 20 20 C 1.53002 * 109.47204 * 300.00221 * 18 2 1 21 21 C 1.53000 * 109.47233 * 180.02562 * 20 18 2 22 22 C 1.52997 * 109.47060 * 299.99657 * 21 20 18 23 23 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 24 24 O 1.42905 * 109.47264 * 300.00236 * 22 21 20 25 25 C 1.52999 * 109.47317 * 59.99960 * 22 21 20 26 26 C 1.52997 * 109.47244 * 59.99973 * 18 2 1 27 27 H 1.09000 * 109.47080 * 269.99391 * 1 2 3 28 28 H 1.08994 * 109.47352 * 30.00119 * 1 2 3 29 29 H 1.09003 * 109.46831 * 149.99780 * 1 2 3 30 30 H 1.09002 * 109.47040 * 299.99114 * 5 3 2 31 31 H 1.08995 * 109.47478 * 59.99494 * 5 3 2 32 32 H 1.08992 * 109.46927 * 300.00036 * 6 5 3 33 33 H 1.09007 * 109.46934 * 59.99932 * 6 5 3 34 34 H 1.09008 * 109.47183 * 300.00178 * 7 6 5 35 35 H 1.09001 * 109.47065 * 59.99382 * 7 6 5 36 36 H 1.08004 * 120.02512 * 0.02562 * 10 9 8 37 37 H 1.08998 * 109.47084 * 60.00050 * 12 11 10 38 38 H 0.96699 * 114.00115 * 300.00162 * 13 12 11 39 39 H 1.48504 * 109.99707 * 180.02562 * 14 12 11 40 40 H 1.48496 * 109.99955 * 301.31797 * 14 12 11 41 41 H 1.07997 * 119.94907 * 179.97438 * 15 11 10 42 42 H 1.08003 * 119.96843 * 180.02562 * 16 15 11 43 43 H 1.07997 * 120.02514 * 180.27759 * 17 16 15 44 44 H 1.08992 * 109.47063 * 59.99836 * 20 18 2 45 45 H 1.09004 * 109.46733 * 299.99549 * 20 18 2 46 46 H 1.09002 * 109.47398 * 59.99826 * 21 20 18 47 47 H 1.09001 * 109.47194 * 180.02562 * 21 20 18 48 48 H 0.96696 * 113.99968 * 179.97438 * 24 22 21 49 49 H 1.09000 * 109.47486 * 180.02562 * 25 22 21 50 50 H 1.09002 * 109.46716 * 60.00091 * 25 22 21 51 51 H 1.09002 * 109.47153 * 300.00242 * 26 18 2 52 52 H 1.09001 * 109.47289 * 60.00326 * 26 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 0.0011 7 6 1.6145 4.9603 0.0011 8 8 2.5430 6.0465 0.0009 9 6 2.0235 7.3023 0.0014 10 6 2.8673 8.4032 0.0019 11 6 2.3366 9.6788 0.0029 12 6 3.2529 10.8754 0.0028 13 8 4.0782 10.8434 1.1690 14 14 2.2358 12.4363 0.0036 15 6 0.9659 9.8586 0.0029 16 6 0.1226 8.7627 0.0014 17 6 0.6481 7.4853 -0.0051 18 6 2.1976 -1.2686 -0.0006 19 1 3.2692 -1.0695 -0.0009 20 6 1.8280 -2.0715 1.2483 21 6 2.5935 -3.3962 1.2480 22 6 2.2245 -4.1983 -0.0015 23 1 2.7695 -5.1422 -0.0016 24 8 0.8196 -4.4600 -0.0020 25 6 2.5940 -3.3954 -1.2504 26 6 1.8280 -2.0704 -1.2501 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 0.7584 2.5302 -0.8892 31 1 0.7589 2.5298 0.8907 32 1 3.0061 3.5772 0.8910 33 1 3.0062 3.5780 -0.8890 34 1 0.9880 5.0182 -0.8892 35 1 0.9874 5.0178 0.8908 36 1 3.9382 8.2633 0.0014 37 1 3.8811 10.8519 -0.8876 38 1 3.5849 10.8618 2.0005 39 1 3.1277 13.6237 0.0028 40 1 1.3504 12.4661 -1.1882 41 1 0.5531 10.8566 0.0042 42 1 -0.9479 8.9057 0.0010 43 1 -0.0110 6.6298 -0.0108 44 1 0.7564 -2.2707 1.2482 45 1 2.0913 -1.5003 2.1385 46 1 3.6651 -3.1966 1.2484 47 1 2.3299 -3.9684 2.1375 48 1 0.5140 -4.9656 -0.7674 49 1 2.3307 -3.9666 -2.1407 50 1 3.6656 -3.1958 -1.2501 51 1 0.7563 -2.2696 -1.2502 52 1 2.0913 -1.4985 -2.1399 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_4549616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:41:27 Heat of formation + Delta-G solvation = -136.234261 kcal Electronic energy + Delta-G solvation = -30403.092863 eV Core-core repulsion = 26141.015631 eV Total energy + Delta-G solvation = -4262.077233 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 350.197 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.48614 -41.21972 -39.80273 -39.17359 -37.32037 -37.08885 -35.21398 -34.61640 -32.44636 -31.86986 -31.32981 -30.29790 -28.24547 -27.63218 -26.79637 -24.11408 -23.79187 -23.65378 -22.69376 -21.83251 -20.76551 -20.10961 -19.13780 -18.30634 -17.82402 -17.63653 -17.53141 -17.44064 -17.14726 -16.85923 -16.61770 -16.35930 -16.14103 -15.64349 -15.37595 -15.05607 -14.95593 -14.70256 -14.44473 -14.27924 -14.19338 -14.10180 -14.00995 -13.49263 -13.37309 -13.27805 -13.21889 -13.07155 -13.02545 -12.94354 -12.69527 -12.41621 -12.33248 -12.24806 -12.08772 -11.97483 -11.63012 -11.59805 -11.47473 -11.27676 -10.94855 -10.67407 -10.50950 -9.91257 -9.67776 -9.24624 -4.99024 0.21649 0.40831 1.29668 1.54655 1.64767 1.81483 1.96236 2.26887 2.68723 3.36731 3.42001 3.51084 3.66092 3.67894 3.71999 3.83796 3.84698 3.93561 3.95311 4.04126 4.10470 4.14693 4.18610 4.24272 4.25392 4.33427 4.35154 4.36215 4.40605 4.45344 4.46868 4.51827 4.56043 4.62691 4.66450 4.69185 4.85711 4.92688 4.97223 4.97691 4.98776 5.01602 5.10876 5.12018 5.13639 5.24654 5.28755 5.36561 5.38799 5.45401 5.54405 5.74856 6.33960 6.42747 6.74133 6.90772 7.10658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.610 5.610 3 C 0.504 3.496 4 O -0.592 6.592 5 C -0.125 4.125 6 C -0.101 4.101 7 C 0.060 3.940 8 O -0.339 6.339 9 C 0.115 3.885 10 C -0.153 4.153 11 C -0.085 4.085 12 C -0.085 4.085 13 O -0.558 6.558 14 Si 0.794 3.206 15 C -0.160 4.160 16 C -0.072 4.072 17 C -0.206 4.206 18 C 0.138 3.862 19 H 0.070 0.930 20 C -0.113 4.113 21 C -0.115 4.115 22 C 0.107 3.893 23 H 0.066 0.934 24 O -0.577 6.577 25 C -0.148 4.148 26 C -0.115 4.115 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.395 0.605 39 H -0.300 1.300 40 H -0.281 1.281 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.077 0.923 45 H 0.052 0.948 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.391 0.609 49 H 0.084 0.916 50 H 0.068 0.932 51 H 0.082 0.918 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.319 -2.712 0.375 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.342 5.342 3 C 0.294 3.706 4 O -0.473 6.473 5 C -0.164 4.164 6 C -0.139 4.139 7 C -0.015 4.015 8 O -0.254 6.254 9 C 0.070 3.930 10 C -0.172 4.172 11 C -0.085 4.085 12 C -0.193 4.193 13 O -0.366 6.366 14 Si 0.699 3.301 15 C -0.178 4.178 16 C -0.089 4.089 17 C -0.224 4.224 18 C 0.034 3.966 19 H 0.088 0.912 20 C -0.151 4.151 21 C -0.153 4.153 22 C 0.048 3.952 23 H 0.084 0.916 24 O -0.385 6.385 25 C -0.186 4.186 26 C -0.153 4.153 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.245 0.755 39 H -0.229 1.229 40 H -0.208 1.208 41 H 0.166 0.834 42 H 0.178 0.822 43 H 0.171 0.829 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.241 0.759 49 H 0.103 0.897 50 H 0.087 0.913 51 H 0.101 0.899 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.206 -1.760 0.072 9.373 hybrid contribution 0.919 -1.007 -0.930 1.651 sum -8.287 -2.767 -0.858 8.779 Atomic orbital electron populations 1.22098 0.77155 1.05008 1.03287 1.48050 1.08499 1.05143 1.72492 1.21272 0.87648 0.86797 0.74844 1.90703 1.16451 1.88051 1.52065 1.21567 0.98601 0.88832 1.07406 1.21149 0.98128 0.91428 1.03193 1.22970 0.91485 0.83622 1.03405 1.86053 1.37784 1.12897 1.88661 1.19212 0.92895 0.84228 0.96633 1.20310 0.99580 0.90652 1.06612 1.20219 0.94849 0.94130 0.99349 1.25407 0.98207 1.04731 0.91005 1.86469 1.36560 1.97172 1.16379 0.93503 0.78310 0.71785 0.86496 1.21192 0.92022 1.00245 1.04313 1.21319 1.01466 0.90911 0.95247 1.21608 0.93047 1.00132 1.07632 1.21068 0.96667 0.82903 0.95954 0.91206 1.21661 1.01695 0.95339 0.96420 1.21561 1.00314 0.95488 0.97955 1.21742 0.82233 0.96974 0.94264 0.91648 1.86473 1.23184 1.78213 1.50636 1.22224 1.00895 0.96381 0.99127 1.21710 1.01852 0.95546 0.96210 0.91371 0.88464 0.90008 0.85484 0.85621 0.92276 0.92335 0.89843 0.89668 0.86803 0.88108 0.75465 1.22882 1.20758 0.83426 0.82211 0.82868 0.90457 0.92937 0.90449 0.90939 0.75907 0.89721 0.91286 0.89929 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.50 9.30 127.77 1.19 0.69 16 2 N -0.61 -0.14 2.76 -822.61 -2.27 -2.41 16 3 C 0.50 2.23 7.67 87.66 0.67 2.91 16 4 O -0.59 -8.80 15.31 -3.01 -0.05 -8.85 16 5 C -0.12 0.53 4.25 29.85 0.13 0.66 16 6 C -0.10 -0.16 4.87 30.60 0.15 -0.01 16 7 C 0.06 -0.09 4.74 71.98 0.34 0.25 16 8 O -0.34 -2.34 10.14 -92.47 -0.94 -3.27 16 9 C 0.12 0.63 6.69 22.50 0.15 0.78 16 10 C -0.15 -1.08 9.55 22.36 0.21 -0.87 16 11 C -0.08 -0.25 5.39 -19.88 -0.11 -0.36 16 12 C -0.08 -0.19 2.82 71.24 0.20 0.01 16 13 O -0.56 -1.91 12.77 -148.98 -1.90 -3.81 16 14 Si 0.79 -1.27 29.79 68.60 2.04 0.77 16 15 C -0.16 0.17 8.67 22.28 0.19 0.36 16 16 C -0.07 0.19 10.04 22.26 0.22 0.41 16 17 C -0.21 0.09 9.04 22.37 0.20 0.29 16 18 C 0.14 0.30 2.52 44.99 0.11 0.42 16 19 H 0.07 0.59 6.90 -2.39 -0.02 0.57 16 20 C -0.11 -0.10 5.06 30.60 0.15 0.05 16 21 C -0.12 0.02 5.66 30.59 0.17 0.20 16 22 C 0.11 -0.27 3.77 30.59 0.12 -0.16 16 23 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 24 O -0.58 1.31 11.97 -148.98 -1.78 -0.48 16 25 C -0.15 0.45 5.64 30.61 0.17 0.62 16 26 C -0.11 0.14 5.04 30.61 0.15 0.29 16 27 H 0.07 -0.59 8.14 -2.39 -0.02 -0.61 16 28 H 0.10 -1.20 6.44 -2.39 -0.02 -1.21 16 29 H 0.08 -0.66 6.43 -2.39 -0.02 -0.67 16 30 H 0.13 -1.27 7.40 -2.39 -0.02 -1.29 16 31 H 0.13 -1.20 8.11 -2.39 -0.02 -1.22 16 32 H 0.06 0.37 8.10 -2.39 -0.02 0.35 16 33 H 0.06 0.37 8.10 -2.38 -0.02 0.35 16 34 H 0.08 -0.46 7.65 -2.38 -0.02 -0.48 16 35 H 0.09 -0.49 7.68 -2.39 -0.02 -0.50 16 36 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 37 H 0.10 0.42 7.96 -2.39 -0.02 0.40 16 38 H 0.40 -2.01 8.70 -74.06 -0.64 -2.66 16 39 H -0.30 -1.79 7.11 99.48 0.71 -1.08 16 40 H -0.28 -0.61 7.11 99.48 0.71 0.09 16 41 H 0.15 -0.85 4.87 -2.91 -0.01 -0.86 16 42 H 0.16 -1.40 8.06 -2.91 -0.02 -1.42 16 43 H 0.15 -0.92 6.30 -2.91 -0.02 -0.94 16 44 H 0.08 0.06 7.21 -2.39 -0.02 0.04 16 45 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.08 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 48 H 0.39 -3.69 9.08 -74.06 -0.67 -4.37 16 49 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 50 H 0.07 -0.11 8.14 -2.39 -0.02 -0.12 16 51 H 0.08 -0.24 6.20 -2.39 -0.01 -0.25 16 52 H 0.05 0.04 8.14 -2.39 -0.02 0.03 16 Total: 0.00 -26.16 406.06 -0.81 -26.97 By element: Atomic # 1 Polarization: -15.13 SS G_CDS: -0.35 Total: -15.47 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 4.44 Total: 6.55 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -2.27 Total: -2.41 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -4.67 Total: -16.41 kcal Atomic # 14 Polarization: -1.27 SS G_CDS: 2.04 Total: 0.77 kcal Total: -26.16 -0.81 -26.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_4549616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.267 kcal (2) G-P(sol) polarization free energy of solvation -26.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds