Wall clock time and date at job start Sun Mar 7 2021 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33818 * 122.44699 * 2 1 4 4 C 1.50694 * 124.52414 * 0.02562 * 3 2 1 5 5 O 1.42904 * 109.47160 * 30.00149 * 4 3 2 6 6 Si 1.86300 * 109.47076 * 150.00032 * 4 3 2 7 7 S 1.70626 * 110.95332 * 179.74711 * 3 2 1 8 8 C 1.75830 * 91.56038 * 0.35529 * 7 3 2 9 9 C 1.46585 * 125.45657 * 179.91078 * 8 7 3 10 10 O 1.21701 * 119.99911 * 172.27543 * 9 8 7 11 11 N 1.34779 * 119.99844 * 352.00489 * 9 8 7 12 12 C 1.46492 * 120.00156 * 354.24656 * 11 9 8 13 13 C 1.46504 * 120.00024 * 174.24114 * 11 9 8 14 14 H 1.09010 * 109.46830 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.46883 * 119.99970 * 13 11 9 16 16 C 1.53008 * 109.46685 * 180.02562 * 15 13 11 17 17 C 1.52991 * 109.47089 * 299.99882 * 16 15 13 18 18 H 1.08997 * 109.47269 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47413 * 300.00318 * 17 16 15 20 20 C 1.52999 * 109.47260 * 60.00471 * 17 16 15 21 21 C 1.52997 * 109.47112 * 240.00357 * 13 11 9 22 22 C 1.36641 * 109.08679 * 359.65152 * 8 7 3 23 23 H 1.08999 * 109.46778 * 269.99752 * 1 2 3 24 24 H 1.08996 * 109.47264 * 30.00240 * 1 2 3 25 25 H 1.09006 * 109.46806 * 149.99903 * 1 2 3 26 26 H 1.09001 * 109.47184 * 269.99975 * 4 3 2 27 27 H 0.96697 * 113.99818 * 59.99464 * 5 4 3 28 28 H 1.48505 * 109.99837 * 180.02562 * 6 4 3 29 29 H 1.48502 * 109.99999 * 301.31949 * 6 4 3 30 30 H 1.09000 * 109.47664 * 84.00731 * 12 11 9 31 31 H 1.09000 * 109.47296 * 204.00814 * 12 11 9 32 32 H 1.08997 * 109.47106 * 324.00785 * 12 11 9 33 33 H 1.08994 * 109.47359 * 299.99904 * 15 13 11 34 34 H 1.08997 * 109.46876 * 60.00674 * 15 13 11 35 35 H 1.09007 * 109.46755 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47138 * 60.00559 * 16 15 13 37 37 H 0.96696 * 114.00061 * 299.99685 * 19 17 16 38 38 H 1.09000 * 109.47783 * 180.02562 * 20 17 16 39 39 H 1.09000 * 109.47348 * 59.99549 * 20 17 16 40 40 H 1.09000 * 109.47109 * 299.99490 * 21 13 11 41 41 H 1.08997 * 109.47277 * 59.99950 * 21 13 11 42 42 H 1.08007 * 123.35159 * 180.24184 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3756 2.4979 0.6747 6 14 2.7928 3.6825 0.8786 7 16 3.8970 0.7893 0.0070 8 6 3.5937 -0.9426 -0.0009 9 6 4.6232 -1.9862 -0.0015 10 8 4.3065 -3.1534 0.1344 11 7 5.9198 -1.6535 -0.1581 12 6 6.2899 -0.2671 -0.4533 13 6 6.9593 -2.6783 -0.0330 14 1 6.4963 -3.6405 0.1861 15 6 7.7401 -2.7755 -1.3452 16 6 8.8252 -3.8463 -1.2147 17 6 9.7797 -3.4694 -0.0800 18 1 10.5530 -4.2319 0.0127 19 8 10.3871 -2.2082 -0.3675 20 6 8.9990 -3.3721 1.2322 21 6 7.9137 -2.3008 1.1017 22 6 2.2447 -1.1600 -0.0005 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.4929 2.8508 -1.0270 27 1 0.4267 2.2092 1.5961 28 1 2.2225 5.0536 0.8865 29 1 3.0204 3.2195 2.2711 30 1 6.3492 0.2990 0.4763 31 1 7.2585 -0.2481 -0.9527 32 1 5.5372 0.1793 -1.1031 33 1 7.0601 -3.0445 -2.1535 34 1 8.2030 -1.8135 -1.5646 35 1 9.3818 -3.9153 -2.1494 36 1 8.3620 -4.8082 -0.9954 37 1 10.8997 -2.1963 -1.1873 38 1 9.6789 -3.1031 2.0406 39 1 8.5357 -4.3341 1.4515 40 1 8.3766 -1.3387 0.8821 41 1 7.3574 -2.2315 2.0364 42 1 1.8020 -2.1452 -0.0010 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15557736_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:42:46 Heat of formation + Delta-G solvation = -82.800224 kcal Electronic energy + Delta-G solvation = -24564.426439 eV Core-core repulsion = 21023.575957 eV Total energy + Delta-G solvation = -3540.850482 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37442 -40.14402 -39.49010 -37.49434 -36.94665 -35.03478 -32.19760 -31.88893 -30.21886 -30.17989 -28.08596 -26.40322 -24.57268 -23.81332 -22.98239 -21.05643 -20.57042 -19.97690 -19.05925 -17.97839 -17.77995 -17.33570 -17.13685 -16.62136 -16.55911 -16.29859 -15.87001 -15.66811 -14.91003 -14.68756 -14.52687 -14.42583 -14.16952 -14.15354 -13.94964 -13.71194 -13.47658 -13.29809 -13.26942 -13.07192 -13.04949 -12.88804 -12.48484 -12.31781 -12.16832 -12.12665 -11.55457 -11.41313 -11.31164 -11.01249 -10.86298 -10.74856 -9.84828 -9.49083 -9.28665 -5.20825 -0.54035 0.38523 0.83491 1.09281 1.38216 1.50158 1.83355 1.85350 2.21930 3.15708 3.23558 3.43007 3.60715 3.66549 3.71638 3.88560 3.95428 4.02861 4.12555 4.17180 4.25454 4.32281 4.38649 4.41128 4.44931 4.48679 4.56996 4.61927 4.63173 4.80347 4.82701 4.87109 4.91713 4.98955 5.07336 5.08581 5.10565 5.23695 5.34756 5.43848 5.49690 5.52252 6.21807 6.27466 6.65063 7.10869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.097 4.097 3 C -0.261 4.261 4 C -0.031 4.031 5 O -0.519 6.519 6 Si 0.661 3.339 7 S 0.225 5.775 8 C -0.264 4.264 9 C 0.591 3.409 10 O -0.528 6.528 11 N -0.607 5.607 12 C 0.056 3.944 13 C 0.143 3.857 14 H 0.102 0.898 15 C -0.123 4.123 16 C -0.150 4.150 17 C 0.103 3.897 18 H 0.058 0.942 19 O -0.564 6.564 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.047 4.047 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.127 0.873 27 H 0.378 0.622 28 H -0.239 1.239 29 H -0.248 1.248 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.377 0.623 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 2.265 -1.914 5.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.379 4.379 4 C -0.143 4.143 5 O -0.326 6.326 6 Si 0.559 3.441 7 S 0.495 5.505 8 C -0.384 4.384 9 C 0.380 3.620 10 O -0.406 6.406 11 N -0.339 5.339 12 C -0.089 4.089 13 C 0.040 3.960 14 H 0.120 0.880 15 C -0.162 4.162 16 C -0.188 4.188 17 C 0.044 3.956 18 H 0.076 0.924 19 O -0.369 6.369 20 C -0.148 4.148 21 C -0.162 4.162 22 C -0.081 4.081 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.144 0.856 27 H 0.226 0.774 28 H -0.162 1.162 29 H -0.171 1.171 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.224 0.776 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.048 3.504 -1.157 6.253 hybrid contribution -1.900 -1.504 0.110 2.426 sum 3.148 2.001 -1.046 3.874 Atomic orbital electron populations 1.20632 0.89073 1.03255 1.02512 1.18665 0.98190 0.90704 1.03378 1.24997 1.01652 1.00409 1.10863 1.24413 0.91081 0.95473 1.03315 1.86628 1.27728 1.89198 1.29007 0.95571 0.84973 0.79928 0.83622 1.83259 1.00397 0.98403 1.68461 1.24569 0.97868 0.96864 1.19104 1.17021 0.81390 0.87273 0.76338 1.90837 1.81022 1.18597 1.50170 1.47687 1.05595 1.09758 1.70864 1.22045 1.02927 0.81863 1.02065 1.21179 0.87253 0.92207 0.95361 0.88022 1.21786 0.97228 1.00125 0.97018 1.22224 0.97696 0.99558 0.99365 1.21802 0.93667 0.85628 0.94524 0.92443 1.86510 1.70340 1.33565 1.46511 1.21526 0.97115 0.99722 0.96445 1.21808 0.96108 1.00246 0.98044 1.20678 0.90988 0.99989 0.96419 0.91403 0.89812 0.91972 0.85579 0.77392 1.16206 1.17141 0.91347 0.88592 0.90166 0.91537 0.90727 0.91113 0.90602 0.77595 0.90672 0.90328 0.90422 0.91646 0.83004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.03 8.67 36.01 0.31 0.29 16 2 C -0.10 -0.12 5.75 -106.45 -0.61 -0.73 16 3 C -0.26 -0.02 5.54 -35.86 -0.20 -0.22 16 4 C -0.03 0.03 2.76 36.00 0.10 0.13 16 5 O -0.52 -0.01 9.86 -35.23 -0.35 -0.36 16 6 Si 0.66 -0.95 31.30 -169.99 -5.32 -6.27 16 7 S 0.23 -0.21 15.55 -107.50 -1.67 -1.89 16 8 C -0.26 -0.57 6.19 -36.79 -0.23 -0.79 16 9 C 0.59 2.17 7.63 -12.89 -0.10 2.07 16 10 O -0.53 -3.77 16.20 5.19 0.08 -3.68 16 11 N -0.61 -0.57 2.76 -175.51 -0.48 -1.05 16 12 C 0.06 -0.11 7.85 59.84 0.47 0.36 16 13 C 0.14 0.08 2.51 -67.93 -0.17 -0.09 16 14 H 0.10 0.26 6.91 -51.92 -0.36 -0.10 16 15 C -0.12 0.11 5.05 -26.73 -0.13 -0.03 16 16 C -0.15 0.28 5.64 -26.73 -0.15 0.13 16 17 C 0.10 -0.16 3.77 -26.74 -0.10 -0.26 16 18 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 19 O -0.56 0.62 11.97 -35.23 -0.42 0.20 16 20 C -0.11 0.09 5.67 -26.70 -0.15 -0.06 16 21 C -0.12 0.02 5.06 -26.70 -0.14 -0.11 16 22 C -0.05 -0.11 9.80 -40.44 -0.40 -0.51 16 23 H 0.07 -0.03 8.14 -51.93 -0.42 -0.45 16 24 H 0.08 0.07 6.42 -51.93 -0.33 -0.27 16 25 H 0.06 0.00 8.13 -51.93 -0.42 -0.42 16 26 H 0.13 -0.22 7.96 -51.93 -0.41 -0.64 16 27 H 0.38 -0.84 8.66 45.56 0.39 -0.44 16 28 H -0.24 -0.32 7.11 56.52 0.40 0.09 16 29 H -0.25 -0.23 7.11 56.52 0.40 0.18 16 30 H 0.07 -0.20 7.48 -51.93 -0.39 -0.59 16 31 H 0.10 -0.31 6.44 -51.93 -0.33 -0.65 16 32 H 0.08 -0.21 5.16 -28.04 -0.14 -0.36 16 33 H 0.07 0.01 8.14 -51.93 -0.42 -0.42 16 34 H 0.07 -0.10 6.21 -51.93 -0.32 -0.42 16 35 H 0.07 -0.19 8.14 -51.93 -0.42 -0.62 16 36 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 37 H 0.38 -1.68 9.08 45.56 0.41 -1.27 16 38 H 0.07 -0.04 8.14 -51.93 -0.42 -0.47 16 39 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 40 H 0.08 0.00 7.21 -51.93 -0.37 -0.37 16 41 H 0.06 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.15 0.36 8.06 -52.48 -0.42 -0.06 16 LS Contribution 336.59 15.07 5.07 5.07 Total: 0.00 -7.20 336.59 -9.87 -17.07 By element: Atomic # 1 Polarization: -3.97 SS G_CDS: -5.29 Total: -9.25 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.50 Total: 0.16 kcal Atomic # 7 Polarization: -0.57 SS G_CDS: -0.48 Total: -1.05 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.68 Total: -3.84 kcal Atomic # 14 Polarization: -0.95 SS G_CDS: -5.32 Total: -6.27 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -1.67 Total: -1.89 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -7.20 -9.87 -17.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.727 kcal (2) G-P(sol) polarization free energy of solvation -7.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds