Wall clock time and date at job start Sun Mar 7 2021 05:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33818 * 122.44699 * 2 1 4 4 C 1.50694 * 124.52414 * 0.02562 * 3 2 1 5 5 O 1.42904 * 109.47160 * 30.00149 * 4 3 2 6 6 Si 1.86300 * 109.47076 * 150.00032 * 4 3 2 7 7 S 1.70626 * 110.95332 * 179.74711 * 3 2 1 8 8 C 1.75830 * 91.56038 * 0.35529 * 7 3 2 9 9 C 1.46585 * 125.45657 * 179.91078 * 8 7 3 10 10 O 1.21701 * 119.99911 * 172.27543 * 9 8 7 11 11 N 1.34779 * 119.99844 * 352.00489 * 9 8 7 12 12 C 1.46492 * 120.00156 * 354.24656 * 11 9 8 13 13 C 1.46504 * 120.00024 * 174.24114 * 11 9 8 14 14 H 1.09010 * 109.46830 * 0.02562 * 13 11 9 15 15 C 1.52999 * 109.46883 * 119.99970 * 13 11 9 16 16 C 1.53008 * 109.46685 * 180.02562 * 15 13 11 17 17 C 1.52991 * 109.47089 * 299.99882 * 16 15 13 18 18 H 1.08997 * 109.47269 * 180.02562 * 17 16 15 19 19 O 1.42900 * 109.47413 * 300.00318 * 17 16 15 20 20 C 1.52999 * 109.47260 * 60.00471 * 17 16 15 21 21 C 1.52997 * 109.47112 * 240.00357 * 13 11 9 22 22 C 1.36641 * 109.08679 * 359.65152 * 8 7 3 23 23 H 1.08999 * 109.46778 * 269.99752 * 1 2 3 24 24 H 1.08996 * 109.47264 * 30.00240 * 1 2 3 25 25 H 1.09006 * 109.46806 * 149.99903 * 1 2 3 26 26 H 1.09001 * 109.47184 * 269.99975 * 4 3 2 27 27 H 0.96697 * 113.99818 * 59.99464 * 5 4 3 28 28 H 1.48505 * 109.99837 * 180.02562 * 6 4 3 29 29 H 1.48502 * 109.99999 * 301.31949 * 6 4 3 30 30 H 1.09000 * 109.47664 * 84.00731 * 12 11 9 31 31 H 1.09000 * 109.47296 * 204.00814 * 12 11 9 32 32 H 1.08997 * 109.47106 * 324.00785 * 12 11 9 33 33 H 1.08994 * 109.47359 * 299.99904 * 15 13 11 34 34 H 1.08997 * 109.46876 * 60.00674 * 15 13 11 35 35 H 1.09007 * 109.46755 * 180.02562 * 16 15 13 36 36 H 1.08997 * 109.47138 * 60.00559 * 16 15 13 37 37 H 0.96696 * 114.00061 * 299.99685 * 19 17 16 38 38 H 1.09000 * 109.47783 * 180.02562 * 20 17 16 39 39 H 1.09000 * 109.47348 * 59.99549 * 20 17 16 40 40 H 1.09000 * 109.47109 * 299.99490 * 21 13 11 41 41 H 1.08997 * 109.47277 * 59.99950 * 21 13 11 42 42 H 1.08007 * 123.35159 * 180.24184 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.3756 2.4979 0.6747 6 14 2.7928 3.6825 0.8786 7 16 3.8970 0.7893 0.0070 8 6 3.5937 -0.9426 -0.0009 9 6 4.6232 -1.9862 -0.0015 10 8 4.3065 -3.1534 0.1344 11 7 5.9198 -1.6535 -0.1581 12 6 6.2899 -0.2671 -0.4533 13 6 6.9593 -2.6783 -0.0330 14 1 6.4963 -3.6405 0.1861 15 6 7.7401 -2.7755 -1.3452 16 6 8.8252 -3.8463 -1.2147 17 6 9.7797 -3.4694 -0.0800 18 1 10.5530 -4.2319 0.0127 19 8 10.3871 -2.2082 -0.3675 20 6 8.9990 -3.3721 1.2322 21 6 7.9137 -2.3008 1.1017 22 6 2.2447 -1.1600 -0.0005 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5138 25 1 -0.3633 -0.8900 -0.5139 26 1 1.4929 2.8508 -1.0270 27 1 0.4267 2.2092 1.5961 28 1 2.2225 5.0536 0.8865 29 1 3.0204 3.2195 2.2711 30 1 6.3492 0.2990 0.4763 31 1 7.2585 -0.2481 -0.9527 32 1 5.5372 0.1793 -1.1031 33 1 7.0601 -3.0445 -2.1535 34 1 8.2030 -1.8135 -1.5646 35 1 9.3818 -3.9153 -2.1494 36 1 8.3620 -4.8082 -0.9954 37 1 10.8997 -2.1963 -1.1873 38 1 9.6789 -3.1031 2.0406 39 1 8.5357 -4.3341 1.4515 40 1 8.3766 -1.3387 0.8821 41 1 7.3574 -2.2315 2.0364 42 1 1.8020 -2.1452 -0.0010 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_6739946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:42:45 Heat of formation + Delta-G solvation = -81.589957 kcal Electronic energy + Delta-G solvation = -24564.373958 eV Core-core repulsion = 21023.575957 eV Total energy + Delta-G solvation = -3540.798001 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 312.123 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48421 -40.15737 -39.51782 -37.48672 -37.04025 -35.01843 -32.24831 -31.82788 -30.23026 -30.14186 -28.07496 -26.44424 -24.59490 -23.75495 -22.98156 -21.07180 -20.56886 -20.03738 -19.11261 -18.03801 -17.67749 -17.34396 -17.18539 -16.68901 -16.55827 -16.29704 -15.86432 -15.59103 -15.00352 -14.70786 -14.53302 -14.40354 -14.24763 -14.10796 -13.95295 -13.70270 -13.46703 -13.25241 -13.20691 -13.11607 -13.03468 -12.91562 -12.46450 -12.33971 -12.18828 -12.05532 -11.56665 -11.40848 -11.30470 -11.14111 -10.86296 -10.66714 -9.95058 -9.52484 -9.28188 -5.12915 -0.64048 0.34539 0.81079 1.09080 1.32009 1.55281 1.78305 1.88410 2.03516 3.24655 3.37920 3.41539 3.62442 3.72324 3.75331 3.96430 4.06404 4.08190 4.12384 4.20342 4.30473 4.36221 4.44452 4.48380 4.50888 4.51344 4.57581 4.63129 4.74736 4.79233 4.83536 4.93489 4.97995 5.00171 5.05275 5.14315 5.15296 5.27728 5.36831 5.39194 5.43909 5.49266 6.16779 6.35743 6.91676 6.96722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.112 4.112 3 C -0.263 4.263 4 C -0.039 4.039 5 O -0.531 6.531 6 Si 0.740 3.260 7 S 0.296 5.704 8 C -0.292 4.292 9 C 0.583 3.417 10 O -0.578 6.578 11 N -0.602 5.602 12 C 0.046 3.954 13 C 0.141 3.859 14 H 0.075 0.925 15 C -0.116 4.116 16 C -0.147 4.147 17 C 0.107 3.893 18 H 0.066 0.934 19 O -0.576 6.576 20 C -0.114 4.114 21 C -0.115 4.115 22 C -0.061 4.061 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.140 0.860 27 H 0.386 0.614 28 H -0.275 1.275 29 H -0.277 1.277 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.392 0.608 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 3.855 -2.494 7.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.382 4.382 4 C -0.149 4.149 5 O -0.340 6.340 6 Si 0.642 3.358 7 S 0.567 5.433 8 C -0.411 4.411 9 C 0.373 3.627 10 O -0.460 6.460 11 N -0.332 5.332 12 C -0.098 4.098 13 C 0.038 3.962 14 H 0.093 0.907 15 C -0.155 4.155 16 C -0.185 4.185 17 C 0.048 3.952 18 H 0.084 0.916 19 O -0.384 6.384 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.095 4.095 23 H 0.091 0.909 24 H 0.100 0.900 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.236 0.764 28 H -0.201 1.201 29 H -0.203 1.203 30 H 0.101 0.899 31 H 0.133 0.867 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.241 0.759 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.445 5.110 -1.762 8.412 hybrid contribution -2.304 -1.916 0.315 3.013 sum 4.141 3.194 -1.447 5.426 Atomic orbital electron populations 1.20592 0.88718 1.02972 1.02766 1.18687 0.98600 0.90634 1.04452 1.25298 1.02659 1.00606 1.09611 1.24679 0.91047 0.94862 1.04320 1.86608 1.28296 1.89217 1.29858 0.94737 0.83292 0.76636 0.81171 1.82875 0.98858 0.95035 1.66561 1.24605 0.97487 0.98857 1.20186 1.17342 0.82435 0.87010 0.75955 1.90796 1.81916 1.20567 1.52735 1.47803 1.04813 1.11124 1.69491 1.22328 1.04073 0.80197 1.03174 1.21190 0.87181 0.91136 0.96645 0.90707 1.21730 0.97083 1.01104 0.95546 1.22211 0.97392 0.98831 1.00086 1.21735 0.93723 0.85856 0.93885 0.91619 1.86469 1.70666 1.33572 1.47716 1.21563 0.96985 0.99484 0.97156 1.21721 0.95879 1.00684 0.97069 1.20694 0.91506 1.00010 0.97318 0.90924 0.90032 0.92216 0.84252 0.76401 1.20094 1.20252 0.89899 0.86703 0.89433 0.92666 0.89522 0.89615 0.91222 0.75865 0.90778 0.90370 0.89932 0.92756 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.12 8.67 71.24 0.62 0.49 16 2 C -0.11 -0.35 5.75 -21.05 -0.12 -0.47 16 3 C -0.26 0.10 5.54 24.68 0.14 0.23 16 4 C -0.04 0.11 2.76 71.23 0.20 0.30 16 5 O -0.53 0.24 9.86 -148.98 -1.47 -1.23 16 6 Si 0.74 -2.92 31.30 68.60 2.15 -0.77 16 7 S 0.30 -0.84 15.55 -56.49 -0.88 -1.72 16 8 C -0.29 -1.57 6.19 24.08 0.15 -1.43 16 9 C 0.58 5.39 7.63 86.42 0.66 6.05 16 10 O -0.58 -10.18 16.20 -4.35 -0.07 -10.25 16 11 N -0.60 -1.56 2.76 -827.42 -2.28 -3.85 16 12 C 0.05 -0.24 7.85 127.77 1.00 0.76 16 13 C 0.14 0.30 2.51 44.99 0.11 0.42 16 14 H 0.07 0.59 6.91 -2.38 -0.02 0.57 16 15 C -0.12 0.20 5.05 30.60 0.15 0.35 16 16 C -0.15 0.58 5.64 30.59 0.17 0.76 16 17 C 0.11 -0.40 3.77 30.59 0.12 -0.28 16 18 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 19 O -0.58 2.08 11.97 -148.98 -1.78 0.30 16 20 C -0.11 0.16 5.67 30.61 0.17 0.33 16 21 C -0.12 0.00 5.06 30.61 0.15 0.15 16 22 C -0.06 -0.39 9.80 21.72 0.21 -0.18 16 23 H 0.07 0.00 8.14 -2.39 -0.02 -0.02 16 24 H 0.08 0.15 6.42 -2.39 -0.02 0.13 16 25 H 0.06 0.09 8.13 -2.38 -0.02 0.07 16 26 H 0.14 -0.72 7.96 -2.39 -0.02 -0.74 16 27 H 0.39 -1.83 8.66 -74.06 -0.64 -2.47 16 28 H -0.28 -0.65 7.11 99.48 0.71 0.05 16 29 H -0.28 -0.29 7.11 99.48 0.71 0.41 16 30 H 0.08 -0.63 7.48 -2.39 -0.02 -0.65 16 31 H 0.11 -0.98 6.44 -2.39 -0.02 -1.00 16 32 H 0.09 -0.59 5.16 -17.58 -0.09 -0.68 16 33 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 34 H 0.09 -0.35 6.21 -2.39 -0.01 -0.37 16 35 H 0.09 -0.57 8.14 -2.38 -0.02 -0.59 16 36 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.39 -4.18 9.08 -74.06 -0.67 -4.86 16 38 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 39 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.08 -0.07 7.21 -2.39 -0.02 -0.09 16 41 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 Total: 0.00 -18.89 336.59 -0.91 -19.80 By element: Atomic # 1 Polarization: -9.47 SS G_CDS: -0.31 Total: -9.78 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 3.74 Total: 7.50 kcal Atomic # 7 Polarization: -1.56 SS G_CDS: -2.28 Total: -3.85 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -3.32 Total: -11.18 kcal Atomic # 14 Polarization: -2.92 SS G_CDS: 2.15 Total: -0.77 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -0.88 Total: -1.72 kcal Total: -18.89 -0.91 -19.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_6739946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.792 kcal (2) G-P(sol) polarization free energy of solvation -18.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds