Wall clock time and date at job start Sun Mar 7 2021 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34783 * 119.99673 * 2 1 4 4 O 1.21635 * 119.99615 * 187.24271 * 3 2 1 5 5 C 1.47194 * 119.99983 * 7.25127 * 3 2 1 6 6 C 1.36009 * 123.45982 * 9.63518 * 5 3 2 7 7 S 1.70450 * 110.81328 * 179.89274 * 6 5 3 8 8 C 1.75500 * 92.44488 * 0.32565 * 7 6 5 9 9 C 1.50701 * 124.70965 * 179.85317 * 8 7 6 10 10 O 1.42901 * 109.47248 * 244.95360 * 9 8 7 11 11 Si 1.86297 * 109.47203 * 4.95877 * 9 8 7 12 12 C 1.32769 * 110.57584 * 359.81591 * 8 7 6 13 13 C 1.46501 * 120.00320 * 180.02562 * 2 1 3 14 14 H 1.09003 * 109.47118 * 179.97438 * 13 2 1 15 15 C 1.52994 * 109.47023 * 300.00084 * 13 2 1 16 16 C 1.53004 * 109.47071 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46954 * 299.99924 * 16 15 13 18 18 H 1.08998 * 109.46723 * 179.97438 * 17 16 15 19 19 O 1.42897 * 109.47233 * 299.99721 * 17 16 15 20 20 C 1.52994 * 109.47170 * 60.00136 * 17 16 15 21 21 C 1.52999 * 109.46909 * 59.99952 * 13 2 1 22 22 H 1.08999 * 109.46830 * 275.83224 * 1 2 3 23 23 H 1.08992 * 109.47616 * 35.83475 * 1 2 3 24 24 H 1.08997 * 109.46943 * 155.83650 * 1 2 3 25 25 H 1.08002 * 124.59267 * 0.02562 * 6 5 3 26 26 H 1.09007 * 109.47055 * 124.95521 * 9 8 7 27 27 H 0.96696 * 113.99431 * 60.00181 * 10 9 8 28 28 H 1.48501 * 109.99984 * 179.97438 * 11 9 8 29 29 H 1.48495 * 109.99920 * 301.31506 * 11 9 8 30 30 H 1.08006 * 123.45281 * 179.97438 * 12 8 7 31 31 H 1.09000 * 109.47423 * 299.99756 * 15 13 2 32 32 H 1.09001 * 109.47778 * 59.99855 * 15 13 2 33 33 H 1.09005 * 109.47226 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.47026 * 59.99909 * 16 15 13 35 35 H 0.96699 * 114.00540 * 300.00743 * 19 17 16 36 36 H 1.09003 * 109.47270 * 59.99734 * 20 17 16 37 37 H 1.09000 * 109.47423 * 179.97438 * 20 17 16 38 38 H 1.08997 * 109.47097 * 60.00105 * 21 13 2 39 39 H 1.09003 * 109.47241 * 299.99938 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3479 1.1715 -0.1328 5 6 1.4117 2.4369 0.1609 6 6 0.0970 2.5101 0.5019 7 16 -0.4134 4.1333 0.6014 8 6 1.1752 4.7382 0.1648 9 6 1.5319 6.1965 0.0338 10 8 1.8662 6.4849 -1.3253 11 14 0.0780 7.2403 0.5507 12 6 2.0191 3.7326 -0.0333 13 6 2.1976 -1.2687 -0.0006 14 1 3.2693 -1.0695 -0.0009 15 6 1.8280 -2.0715 1.2483 16 6 2.5926 -3.3968 1.2474 17 6 2.2224 -4.1983 -0.0022 18 1 2.7675 -5.1422 -0.0031 19 8 0.8174 -4.4590 -0.0020 20 6 2.5920 -3.3954 -1.2511 21 6 1.8280 -2.0704 -1.2502 22 1 -0.3633 0.1044 1.0224 23 1 -0.3634 0.8330 -0.6016 24 1 -0.3633 -0.9376 -0.4207 25 1 -0.5370 1.6555 0.6868 26 1 2.3857 6.4206 0.6733 27 1 1.1512 6.3086 -1.9520 28 1 0.4172 8.6808 0.4266 29 1 -1.1017 6.9215 -0.2930 30 1 3.0537 3.8696 -0.3115 31 1 2.0913 -1.5004 2.1385 32 1 0.7564 -2.2708 1.2483 33 1 2.3296 -3.9687 2.1373 34 1 3.6643 -3.1980 1.2472 35 1 0.5114 -4.9654 0.7628 36 1 3.6638 -3.1966 -1.2512 37 1 2.3287 -3.9666 -2.1413 38 1 2.0913 -1.4984 -2.1399 39 1 0.7563 -2.2697 -1.2502 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:42:49 Heat of formation + Delta-G solvation = -63.318453 kcal Electronic energy + Delta-G solvation = -22500.539416 eV Core-core repulsion = 19116.071345 eV Total energy + Delta-G solvation = -3384.468070 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.107 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.66101 -39.94050 -38.84713 -37.32137 -37.14633 -35.02556 -32.08174 -31.86356 -29.90305 -28.50940 -26.77857 -25.59638 -23.78613 -23.15785 -21.50779 -20.61210 -20.46031 -18.70749 -18.19479 -17.73679 -17.52356 -17.18834 -16.62378 -16.56126 -16.29851 -15.70733 -15.48786 -15.29971 -14.64201 -14.55481 -14.27815 -14.16163 -14.03315 -13.75912 -13.65912 -13.28409 -13.22054 -13.08306 -12.83999 -12.53130 -12.41856 -12.21302 -12.09252 -11.83434 -11.47222 -11.29077 -10.98430 -10.76604 -10.66301 -10.00423 -9.82115 -9.43334 -5.03711 -0.35131 0.40022 0.68948 0.78335 1.21668 1.55272 1.84188 1.90676 2.17675 3.28395 3.37806 3.48864 3.61253 3.70803 3.74329 3.93502 3.96462 4.06133 4.12748 4.17310 4.28647 4.34227 4.41817 4.47386 4.48280 4.49640 4.60788 4.67775 4.74421 4.88605 4.95364 4.96910 5.01313 5.08974 5.13013 5.14793 5.24588 5.35040 5.51441 6.23732 6.39602 6.93245 7.01042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.600 5.600 3 C 0.569 3.431 4 O -0.588 6.588 5 C -0.184 4.184 6 C -0.211 4.211 7 S 0.244 5.756 8 C -0.244 4.244 9 C -0.049 4.049 10 O -0.545 6.545 11 Si 0.731 3.269 12 C -0.077 4.077 13 C 0.140 3.860 14 H 0.072 0.928 15 C -0.114 4.114 16 C -0.147 4.147 17 C 0.107 3.893 18 H 0.067 0.933 19 O -0.577 6.577 20 C -0.114 4.114 21 C -0.116 4.116 22 H 0.087 0.913 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.224 0.776 26 H 0.127 0.873 27 H 0.388 0.612 28 H -0.276 1.276 29 H -0.247 1.247 30 H 0.130 0.870 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.392 0.608 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -3.076 4.175 9.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.331 5.331 3 C 0.358 3.642 4 O -0.471 6.471 5 C -0.201 4.201 6 C -0.348 4.348 7 S 0.511 5.489 8 C -0.361 4.361 9 C -0.159 4.159 10 O -0.353 6.353 11 Si 0.631 3.369 12 C -0.106 4.106 13 C 0.037 3.963 14 H 0.090 0.910 15 C -0.152 4.152 16 C -0.186 4.186 17 C 0.048 3.952 18 H 0.085 0.915 19 O -0.385 6.385 20 C -0.152 4.152 21 C -0.154 4.154 22 H 0.106 0.894 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.240 0.760 26 H 0.145 0.855 27 H 0.238 0.762 28 H -0.202 1.202 29 H -0.172 1.172 30 H 0.147 0.853 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.242 0.758 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.226 -1.292 3.919 9.203 hybrid contribution 2.087 -1.230 -1.166 2.689 sum -6.139 -2.523 2.754 7.186 Atomic orbital electron populations 1.22687 0.77944 1.05189 1.03262 1.47792 1.08193 1.04893 1.72182 1.18091 0.86302 0.84057 0.75701 1.90761 1.16147 1.87713 1.52433 1.20064 0.94516 0.93287 1.12230 1.27445 0.98977 1.05785 1.02608 1.82968 1.08024 0.94904 1.63022 1.24827 0.98769 1.00256 1.12199 1.24771 1.12000 0.92628 0.86518 1.86611 1.43899 1.88211 1.16627 0.94348 0.74398 0.78343 0.89829 1.20968 1.00475 0.89884 0.99276 1.21146 0.96629 0.82168 0.96323 0.90996 1.21708 1.02083 0.95492 0.95929 1.22216 1.00938 0.96238 0.99174 1.21731 0.82275 0.96993 0.94165 0.91545 1.86468 1.23112 1.78181 1.50752 1.21545 1.00321 0.95259 0.98106 1.21692 1.01919 0.95475 0.96294 0.89449 0.89006 0.88935 0.75968 0.85535 0.76234 1.20182 1.17205 0.85264 0.92435 0.89734 0.89480 0.91210 0.75836 0.90412 0.90908 0.93194 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.29 7.61 127.77 0.97 0.69 16 2 N -0.60 -1.76 2.76 -826.74 -2.28 -4.05 16 3 C 0.57 5.59 7.63 86.59 0.66 6.25 16 4 O -0.59 -11.18 16.17 -4.14 -0.07 -11.25 16 5 C -0.18 -0.93 5.83 -19.87 -0.12 -1.05 16 6 C -0.21 0.60 8.77 67.30 0.59 1.19 16 7 S 0.24 -1.06 20.20 -56.49 -1.14 -2.20 16 8 C -0.24 -0.29 5.65 24.51 0.14 -0.15 16 9 C -0.05 -0.02 2.94 71.24 0.21 0.19 16 10 O -0.54 -2.09 12.88 -148.98 -1.92 -4.01 16 11 Si 0.73 -2.20 30.92 68.60 2.12 -0.08 16 12 C -0.08 -0.51 9.97 22.67 0.23 -0.28 16 13 C 0.14 0.43 2.51 44.99 0.11 0.55 16 14 H 0.07 0.66 6.92 -2.39 -0.02 0.64 16 15 C -0.11 0.16 5.06 30.59 0.15 0.31 16 16 C -0.15 0.52 5.64 30.60 0.17 0.69 16 17 C 0.11 -0.31 3.77 30.59 0.12 -0.19 16 18 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 19 O -0.58 1.58 11.97 -148.98 -1.78 -0.20 16 20 C -0.11 0.01 5.66 30.58 0.17 0.18 16 21 C -0.12 -0.19 5.05 30.58 0.15 -0.03 16 22 H 0.09 -0.88 7.01 -2.39 -0.02 -0.89 16 23 H 0.09 -0.67 5.58 -2.39 -0.01 -0.68 16 24 H 0.09 -0.66 6.44 -2.39 -0.02 -0.67 16 25 H 0.22 -2.04 3.85 -2.91 -0.01 -2.05 16 26 H 0.13 -0.04 7.96 -2.38 -0.02 -0.06 16 27 H 0.39 -1.00 8.70 -74.06 -0.64 -1.65 16 28 H -0.28 -1.09 7.11 99.48 0.71 -0.38 16 29 H -0.25 0.36 7.11 99.48 0.71 1.06 16 30 H 0.13 1.40 8.06 -2.91 -0.02 1.37 16 31 H 0.06 0.02 8.14 -2.39 -0.02 0.01 16 32 H 0.08 -0.29 7.21 -2.39 -0.02 -0.31 16 33 H 0.09 -0.56 8.14 -2.38 -0.02 -0.58 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.39 -3.93 9.08 -74.06 -0.67 -4.60 16 36 H 0.08 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 38 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.08 0.06 6.21 -2.39 -0.01 0.05 16 Total: 0.00 -20.78 319.21 -1.69 -22.48 By element: Atomic # 1 Polarization: -8.85 SS G_CDS: -0.19 Total: -9.03 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 3.56 Total: 8.34 kcal Atomic # 7 Polarization: -1.76 SS G_CDS: -2.28 Total: -4.05 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: -3.77 Total: -15.46 kcal Atomic # 14 Polarization: -2.20 SS G_CDS: 2.12 Total: -0.08 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -1.14 Total: -2.20 kcal Total: -20.78 -1.69 -22.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.842 kcal (2) G-P(sol) polarization free energy of solvation -20.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds