Wall clock time and date at job start Sun Mar 7 2021 05:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00147 * 2 1 4 4 O 1.21280 * 120.00000 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.99930 * 359.97438 * 3 2 1 6 6 N 1.46504 * 109.47225 * 180.02562 * 5 3 2 7 7 C 1.36839 * 125.06013 * 265.29982 * 6 5 3 8 8 C 1.34230 * 109.93762 * 180.18164 * 7 6 5 9 9 C 1.50698 * 126.50373 * 179.83123 * 8 7 6 10 10 O 1.42902 * 109.46930 * 104.68781 * 9 8 7 11 11 Si 1.86301 * 109.46818 * 344.69141 * 9 8 7 12 12 C 1.46495 * 106.99620 * 359.57274 * 8 7 6 13 13 C 1.39591 * 134.03157 * 180.28571 * 12 8 7 14 14 C 1.36662 * 119.76416 * 179.97438 * 13 12 8 15 15 C 1.38788 * 120.52477 * 359.97438 * 14 13 12 16 16 C 1.37782 * 120.66816 * 0.02562 * 15 14 13 17 17 C 1.37687 * 125.06424 * 84.99902 * 6 5 3 18 18 C 1.46497 * 119.99878 * 179.97438 * 2 1 3 19 19 H 1.08995 * 109.47742 * 245.82573 * 18 2 1 20 20 C 1.53004 * 109.47384 * 5.82208 * 18 2 1 21 21 C 1.53006 * 109.46846 * 59.99694 * 20 18 2 22 22 C 1.53005 * 109.46930 * 60.00244 * 21 20 18 23 23 H 1.08993 * 109.47060 * 59.99824 * 22 21 20 24 24 O 1.42901 * 109.46937 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47241 * 299.99810 * 22 21 20 26 26 C 1.53005 * 109.47323 * 60.00035 * 25 22 21 27 27 H 1.08998 * 109.47499 * 84.07945 * 1 2 3 28 28 H 1.08997 * 109.47212 * 204.08856 * 1 2 3 29 29 H 1.09003 * 109.47060 * 324.08026 * 1 2 3 30 30 H 1.09001 * 109.47301 * 60.00174 * 5 3 2 31 31 H 1.09005 * 109.47178 * 300.00320 * 5 3 2 32 32 H 1.08001 * 125.02928 * 0.02562 * 7 6 5 33 33 H 1.08994 * 109.47681 * 224.69216 * 9 8 7 34 34 H 0.96702 * 113.99785 * 180.02562 * 10 9 8 35 35 H 1.48500 * 110.00256 * 60.00064 * 11 9 8 36 36 H 1.48506 * 110.00000 * 181.31491 * 11 9 8 37 37 H 1.08007 * 120.11940 * 359.94736 * 13 12 8 38 38 H 1.07999 * 119.73497 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.66214 * 180.02562 * 15 14 13 40 40 H 1.08004 * 120.11395 * 179.97438 * 16 15 14 41 41 H 1.08995 * 109.47323 * 179.97438 * 20 18 2 42 42 H 1.08995 * 109.47033 * 300.00398 * 20 18 2 43 43 H 1.08999 * 109.47054 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47314 * 300.00543 * 21 20 18 45 45 H 0.96701 * 113.99810 * 180.02562 * 24 22 21 46 46 H 1.08995 * 109.47530 * 180.02562 * 25 22 21 47 47 H 1.09004 * 109.47342 * 300.00473 * 25 22 21 48 48 H 1.08999 * 109.47373 * 179.97438 * 26 25 22 49 49 H 1.09002 * 109.46992 * 59.99659 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4722 -0.0006 6 7 2.3375 3.5858 -0.0011 7 6 2.7785 4.2434 1.1150 8 6 3.6394 5.2121 0.7652 9 6 4.3451 6.1635 1.6967 10 8 5.7123 5.7707 1.8326 11 14 3.5191 6.1251 3.3662 12 6 3.7675 5.1650 -0.6934 13 6 4.5023 5.8977 -1.6270 14 6 4.4005 5.5984 -2.9565 15 6 3.5724 4.5709 -3.3863 16 6 2.8382 3.8350 -2.4819 17 6 2.9262 4.1227 -1.1240 18 6 2.1974 -1.2687 0.0006 19 1 2.7436 -1.3726 0.9381 20 6 1.2096 -2.4280 -0.1452 21 6 0.4429 -2.2823 -1.4613 22 6 1.4291 -2.3023 -2.6309 23 1 1.9741 -3.2462 -2.6305 24 8 0.7131 -2.1656 -3.8601 25 6 2.4169 -1.1431 -2.4851 26 6 3.1836 -1.2888 -1.1691 27 1 -0.3634 0.1060 -1.0221 28 1 -0.3633 -0.9381 0.4194 29 1 -0.3633 0.8323 0.6029 30 1 0.7585 2.5302 0.8892 31 1 0.7591 2.5298 -0.8908 32 1 2.4766 4.0181 2.1271 33 1 4.2959 7.1736 1.2902 34 1 6.2285 6.3398 2.4199 35 1 3.5794 4.7532 3.9314 36 1 4.1858 7.0826 4.2849 37 1 5.1488 6.6987 -1.2998 38 1 4.9689 6.1659 -3.6785 39 1 3.5027 4.3460 -4.4403 40 1 2.1963 3.0376 -2.8263 41 1 1.7547 -3.3719 -0.1453 42 1 0.5071 -2.4137 0.6879 43 1 -0.2611 -3.1079 -1.5650 44 1 -0.1020 -1.3383 -1.4617 45 1 1.2765 -2.1705 -4.6460 46 1 3.1192 -1.1571 -3.3186 47 1 1.8720 -0.1991 -2.4855 48 1 3.8877 -0.4632 -1.0654 49 1 3.7286 -2.2328 -1.1687 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15557736_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:43:03 Heat of formation + Delta-G solvation = -21.310284 kcal Electronic energy + Delta-G solvation = -31906.657765 eV Core-core repulsion = 27801.905629 eV Total energy + Delta-G solvation = -4104.752136 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.51202 -41.66496 -39.45473 -37.94897 -37.63784 -37.21752 -35.10511 -33.95311 -32.31217 -31.43664 -30.45671 -30.11128 -28.78988 -27.56297 -25.66087 -23.90128 -23.76306 -23.27859 -22.42036 -21.45884 -20.39067 -19.98998 -18.43144 -18.31633 -18.15400 -18.04495 -17.68011 -17.24967 -16.92762 -16.29083 -16.17211 -15.77563 -15.67052 -15.41245 -15.00019 -14.77748 -14.65994 -14.57971 -14.40516 -14.33409 -14.03862 -13.96299 -13.90397 -13.45893 -13.40659 -13.30021 -13.14831 -12.84995 -12.62564 -12.40004 -12.36264 -12.28909 -12.07166 -11.96197 -11.80859 -11.55951 -11.31142 -11.00576 -10.57624 -10.31976 -10.24353 -9.76244 -8.96863 -8.47540 -4.91760 0.32390 0.83847 1.35915 1.41308 1.45077 1.63266 1.78206 1.97998 2.03504 3.07909 3.09253 3.23378 3.48743 3.56007 3.62136 3.69680 3.75570 3.80222 3.88752 3.91991 3.94574 3.98787 4.10566 4.13298 4.15735 4.20670 4.30816 4.35211 4.38778 4.40015 4.46195 4.48299 4.51048 4.71398 4.74003 4.84013 4.92558 4.94275 4.95614 5.01168 5.03436 5.07851 5.08707 5.28397 5.30542 5.49838 5.69106 5.85108 5.90539 5.94363 6.12617 6.32456 6.41002 6.62552 6.65063 7.02563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.607 5.607 3 C 0.492 3.508 4 O -0.508 6.508 5 C 0.093 3.907 6 N -0.465 5.465 7 C 0.073 3.927 8 C -0.152 4.152 9 C -0.037 4.037 10 O -0.535 6.535 11 Si 0.678 3.322 12 C -0.085 4.085 13 C -0.065 4.065 14 C -0.146 4.146 15 C -0.097 4.097 16 C -0.126 4.126 17 C 0.110 3.890 18 C 0.151 3.849 19 H 0.078 0.922 20 C -0.125 4.125 21 C -0.134 4.134 22 C 0.105 3.895 23 H 0.053 0.947 24 O -0.569 6.569 25 C -0.143 4.143 26 C -0.140 4.140 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.168 0.832 33 H 0.071 0.929 34 H 0.375 0.625 35 H -0.256 1.256 36 H -0.260 1.260 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.379 0.621 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.096 0.904 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 -0.655 0.764 6.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.343 5.343 3 C 0.278 3.722 4 O -0.383 6.383 5 C -0.033 4.033 6 N -0.149 5.149 7 C -0.052 4.052 8 C -0.159 4.159 9 C -0.147 4.147 10 O -0.341 6.341 11 Si 0.579 3.421 12 C -0.090 4.090 13 C -0.084 4.084 14 C -0.165 4.165 15 C -0.117 4.117 16 C -0.147 4.147 17 C 0.006 3.994 18 C 0.049 3.951 19 H 0.096 0.904 20 C -0.163 4.163 21 C -0.171 4.171 22 C 0.046 3.954 23 H 0.071 0.929 24 O -0.375 6.375 25 C -0.181 4.181 26 C -0.178 4.178 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.140 0.860 31 H 0.135 0.865 32 H 0.185 0.815 33 H 0.089 0.911 34 H 0.222 0.778 35 H -0.180 1.180 36 H -0.185 1.185 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.227 0.773 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.114 0.886 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.241 -1.520 1.659 6.634 hybrid contribution 1.679 -0.090 -0.329 1.714 sum -4.562 -1.610 1.330 5.017 Atomic orbital electron populations 1.22250 0.79606 1.04196 1.02168 1.47897 1.06897 1.05554 1.73903 1.20926 0.88608 0.85333 0.77373 1.90760 1.13374 1.86640 1.47482 1.21656 0.91082 0.83937 1.06606 1.43211 1.38728 1.27930 1.05000 1.21489 0.98981 0.93859 0.90895 1.19400 1.03014 1.01691 0.91802 1.24014 0.85599 0.97932 1.07151 1.86679 1.20520 1.57466 1.69467 0.95402 0.90383 0.81055 0.75220 1.18935 0.99677 0.97848 0.92491 1.20264 0.97507 0.98598 0.92012 1.20648 1.00994 0.99299 0.95546 1.20800 0.96367 0.95576 0.98916 1.19936 1.03376 1.02029 0.89319 1.18139 0.97219 0.95901 0.88169 1.21077 0.92702 0.82145 0.99206 0.90439 1.21850 0.98512 0.98165 0.97757 1.21981 0.98200 1.04651 0.92300 1.21810 0.92223 0.96702 0.84651 0.92868 1.86491 1.38387 1.96747 1.15876 1.22152 0.98373 0.99546 0.98051 1.21981 0.98552 1.04159 0.93133 0.91345 0.89271 0.91264 0.86042 0.86538 0.81485 0.91054 0.77818 1.18049 1.18503 0.86136 0.85985 0.85796 0.86844 0.89811 0.90217 0.90903 0.89260 0.77346 0.91779 0.91590 0.88609 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.26 8.06 59.85 0.48 0.22 16 2 N -0.61 0.76 2.28 -173.94 -0.40 0.36 16 3 C 0.49 0.60 7.28 -10.99 -0.08 0.52 16 4 O -0.51 -3.00 14.13 5.56 0.08 -2.92 16 5 C 0.09 -0.11 5.11 -5.20 -0.03 -0.14 16 6 N -0.47 -1.08 2.27 -115.71 -0.26 -1.34 16 7 C 0.07 0.18 9.89 -16.73 -0.17 0.01 16 8 C -0.15 -0.57 5.61 -102.71 -0.58 -1.15 16 9 C -0.04 -0.07 3.05 36.00 0.11 0.04 16 10 O -0.53 -1.90 12.86 -35.23 -0.45 -2.35 16 11 Si 0.68 -0.06 30.80 -169.99 -5.24 -5.30 16 12 C -0.09 -0.43 6.35 -105.14 -0.67 -1.10 16 13 C -0.07 -0.27 10.05 -39.65 -0.40 -0.67 16 14 C -0.15 -0.43 9.97 -39.95 -0.40 -0.83 16 15 C -0.10 -0.26 10.01 -39.54 -0.40 -0.65 16 16 C -0.13 -0.40 10.00 -39.43 -0.39 -0.79 16 17 C 0.11 0.46 6.80 -83.99 -0.57 -0.11 16 18 C 0.15 -0.10 3.05 -67.93 -0.21 -0.31 16 19 H 0.08 0.02 8.14 -51.93 -0.42 -0.40 16 20 C -0.13 0.33 4.91 -26.73 -0.13 0.20 16 21 C -0.13 0.23 5.02 -26.73 -0.13 0.09 16 22 C 0.10 -0.06 3.47 -26.73 -0.09 -0.15 16 23 H 0.05 -0.04 8.14 -51.93 -0.42 -0.46 16 24 O -0.57 -0.30 13.32 -35.23 -0.47 -0.77 16 25 C -0.14 0.00 5.39 -26.73 -0.14 -0.15 16 26 C -0.14 -0.09 5.14 -26.73 -0.14 -0.23 16 27 H 0.07 -0.31 6.49 -51.93 -0.34 -0.64 16 28 H 0.09 -0.45 5.26 -51.93 -0.27 -0.72 16 29 H 0.07 -0.43 6.69 -51.93 -0.35 -0.78 16 30 H 0.12 -0.54 7.39 -51.93 -0.38 -0.93 16 31 H 0.12 -0.37 8.11 -51.93 -0.42 -0.79 16 32 H 0.17 -0.03 6.30 -52.49 -0.33 -0.36 16 33 H 0.07 0.03 7.96 -51.93 -0.41 -0.39 16 34 H 0.37 -0.32 8.74 45.56 0.40 0.08 16 35 H -0.26 -0.69 7.04 56.52 0.40 -0.30 16 36 H -0.26 -0.47 7.11 56.52 0.40 -0.07 16 37 H 0.12 0.34 8.06 -52.48 -0.42 -0.08 16 38 H 0.12 0.11 8.06 -52.49 -0.42 -0.31 16 39 H 0.12 0.05 8.06 -52.49 -0.42 -0.37 16 40 H 0.11 0.16 8.06 -52.48 -0.42 -0.26 16 41 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 42 H 0.08 -0.30 6.67 -51.93 -0.35 -0.65 16 43 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 44 H 0.09 -0.18 3.95 -51.93 -0.21 -0.39 16 45 H 0.38 -1.05 9.08 45.56 0.41 -0.64 16 46 H 0.06 0.01 8.14 -51.93 -0.42 -0.42 16 47 H 0.07 0.07 7.46 -51.93 -0.39 -0.31 16 48 H 0.10 0.37 5.77 -51.93 -0.30 0.07 16 49 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 LS Contribution 379.91 15.07 5.73 5.73 Total: 0.00 -11.21 379.91 -11.30 -22.51 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: -6.36 Total: -10.73 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -3.93 Total: -5.18 kcal Atomic # 7 Polarization: -0.32 SS G_CDS: -0.66 Total: -0.97 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.84 Total: -6.05 kcal Atomic # 14 Polarization: -0.06 SS G_CDS: -5.24 Total: -5.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -11.21 -11.30 -22.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.198 kcal (2) G-P(sol) polarization free energy of solvation -11.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds