Wall clock time and date at job start Sun Mar 7 2021 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34779 * 120.00147 * 2 1 4 4 O 1.21280 * 120.00000 * 180.02562 * 3 2 1 5 5 C 1.50691 * 119.99930 * 359.97438 * 3 2 1 6 6 N 1.46504 * 109.47225 * 180.02562 * 5 3 2 7 7 C 1.36839 * 125.06013 * 265.29982 * 6 5 3 8 8 C 1.34230 * 109.93762 * 180.18164 * 7 6 5 9 9 C 1.50698 * 126.50373 * 179.83123 * 8 7 6 10 10 O 1.42902 * 109.46930 * 104.68781 * 9 8 7 11 11 Si 1.86301 * 109.46818 * 344.69141 * 9 8 7 12 12 C 1.46495 * 106.99620 * 359.57274 * 8 7 6 13 13 C 1.39591 * 134.03157 * 180.28571 * 12 8 7 14 14 C 1.36662 * 119.76416 * 179.97438 * 13 12 8 15 15 C 1.38788 * 120.52477 * 359.97438 * 14 13 12 16 16 C 1.37782 * 120.66816 * 0.02562 * 15 14 13 17 17 C 1.37687 * 125.06424 * 84.99902 * 6 5 3 18 18 C 1.46497 * 119.99878 * 179.97438 * 2 1 3 19 19 H 1.08995 * 109.47742 * 245.82573 * 18 2 1 20 20 C 1.53004 * 109.47384 * 5.82208 * 18 2 1 21 21 C 1.53006 * 109.46846 * 59.99694 * 20 18 2 22 22 C 1.53005 * 109.46930 * 60.00244 * 21 20 18 23 23 H 1.08993 * 109.47060 * 59.99824 * 22 21 20 24 24 O 1.42901 * 109.46937 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47241 * 299.99810 * 22 21 20 26 26 C 1.53005 * 109.47323 * 60.00035 * 25 22 21 27 27 H 1.08998 * 109.47499 * 84.07945 * 1 2 3 28 28 H 1.08997 * 109.47212 * 204.08856 * 1 2 3 29 29 H 1.09003 * 109.47060 * 324.08026 * 1 2 3 30 30 H 1.09001 * 109.47301 * 60.00174 * 5 3 2 31 31 H 1.09005 * 109.47178 * 300.00320 * 5 3 2 32 32 H 1.08001 * 125.02928 * 0.02562 * 7 6 5 33 33 H 1.08994 * 109.47681 * 224.69216 * 9 8 7 34 34 H 0.96702 * 113.99785 * 180.02562 * 10 9 8 35 35 H 1.48500 * 110.00256 * 60.00064 * 11 9 8 36 36 H 1.48506 * 110.00000 * 181.31491 * 11 9 8 37 37 H 1.08007 * 120.11940 * 359.94736 * 13 12 8 38 38 H 1.07999 * 119.73497 * 179.97438 * 14 13 12 39 39 H 1.08001 * 119.66214 * 180.02562 * 15 14 13 40 40 H 1.08004 * 120.11395 * 179.97438 * 16 15 14 41 41 H 1.08995 * 109.47323 * 179.97438 * 20 18 2 42 42 H 1.08995 * 109.47033 * 300.00398 * 20 18 2 43 43 H 1.08999 * 109.47054 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.47314 * 300.00543 * 21 20 18 45 45 H 0.96701 * 113.99810 * 180.02562 * 24 22 21 46 46 H 1.08995 * 109.47530 * 180.02562 * 25 22 21 47 47 H 1.09004 * 109.47342 * 300.00473 * 25 22 21 48 48 H 1.08999 * 109.47373 * 179.97438 * 26 25 22 49 49 H 1.09002 * 109.46992 * 59.99659 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3855 2.4722 -0.0006 6 7 2.3375 3.5858 -0.0011 7 6 2.7785 4.2434 1.1150 8 6 3.6394 5.2121 0.7652 9 6 4.3451 6.1635 1.6967 10 8 5.7123 5.7707 1.8326 11 14 3.5191 6.1251 3.3662 12 6 3.7675 5.1650 -0.6934 13 6 4.5023 5.8977 -1.6270 14 6 4.4005 5.5984 -2.9565 15 6 3.5724 4.5709 -3.3863 16 6 2.8382 3.8350 -2.4819 17 6 2.9262 4.1227 -1.1240 18 6 2.1974 -1.2687 0.0006 19 1 2.7436 -1.3726 0.9381 20 6 1.2096 -2.4280 -0.1452 21 6 0.4429 -2.2823 -1.4613 22 6 1.4291 -2.3023 -2.6309 23 1 1.9741 -3.2462 -2.6305 24 8 0.7131 -2.1656 -3.8601 25 6 2.4169 -1.1431 -2.4851 26 6 3.1836 -1.2888 -1.1691 27 1 -0.3634 0.1060 -1.0221 28 1 -0.3633 -0.9381 0.4194 29 1 -0.3633 0.8323 0.6029 30 1 0.7585 2.5302 0.8892 31 1 0.7591 2.5298 -0.8908 32 1 2.4766 4.0181 2.1271 33 1 4.2959 7.1736 1.2902 34 1 6.2285 6.3398 2.4199 35 1 3.5794 4.7532 3.9314 36 1 4.1858 7.0826 4.2849 37 1 5.1488 6.6987 -1.2998 38 1 4.9689 6.1659 -3.6785 39 1 3.5027 4.3460 -4.4403 40 1 2.1963 3.0376 -2.8263 41 1 1.7547 -3.3719 -0.1453 42 1 0.5071 -2.4137 0.6879 43 1 -0.2611 -3.1079 -1.5650 44 1 -0.1020 -1.3383 -1.4617 45 1 1.2765 -2.1705 -4.6460 46 1 3.1192 -1.1571 -3.3186 47 1 1.8720 -0.1991 -2.4855 48 1 3.8877 -0.4632 -1.0654 49 1 3.7286 -2.2328 -1.1687 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:43:02 Heat of formation + Delta-G solvation = -22.604090 kcal Electronic energy + Delta-G solvation = -31906.713868 eV Core-core repulsion = 27801.905629 eV Total energy + Delta-G solvation = -4104.808239 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.61063 -41.66550 -39.48996 -38.11207 -37.76746 -37.24489 -35.08570 -34.04135 -32.24400 -31.55091 -30.45920 -30.27192 -28.80598 -27.38758 -25.75473 -23.93108 -23.80933 -23.32970 -22.52645 -21.42837 -20.53860 -19.96884 -18.52918 -18.36006 -18.15525 -18.06736 -17.75282 -17.24372 -16.91186 -16.44696 -16.17796 -15.81824 -15.66321 -15.46050 -15.06063 -14.88652 -14.75514 -14.59513 -14.47502 -14.38537 -14.13490 -13.94546 -13.78755 -13.53633 -13.41272 -13.23462 -12.92074 -12.75205 -12.70492 -12.56056 -12.53179 -12.32279 -12.11060 -12.00032 -11.73336 -11.70856 -11.25541 -11.04538 -10.66292 -10.45003 -10.35811 -9.70113 -9.17013 -8.64535 -4.91908 0.12312 0.62795 1.29828 1.36523 1.43526 1.60418 1.69828 1.96291 2.03460 2.91347 3.19956 3.30458 3.53225 3.62255 3.64351 3.71090 3.75923 3.79784 3.97000 3.98647 4.00854 4.05605 4.13791 4.20956 4.24604 4.25511 4.29154 4.37369 4.38400 4.41048 4.55497 4.55800 4.60247 4.69679 4.77211 4.81251 4.88038 4.88954 4.99430 5.03299 5.05566 5.08129 5.12499 5.21362 5.30458 5.49808 5.56141 5.64627 5.72032 5.74512 6.13725 6.20805 6.33035 6.66923 6.78000 7.03518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.599 5.599 3 C 0.487 3.513 4 O -0.566 6.566 5 C 0.089 3.911 6 N -0.465 5.465 7 C 0.073 3.927 8 C -0.180 4.180 9 C -0.057 4.057 10 O -0.565 6.565 11 Si 0.781 3.219 12 C -0.116 4.116 13 C -0.086 4.086 14 C -0.152 4.152 15 C -0.106 4.106 16 C -0.134 4.134 17 C 0.092 3.908 18 C 0.150 3.850 19 H 0.064 0.936 20 C -0.115 4.115 21 C -0.133 4.133 22 C 0.105 3.895 23 H 0.055 0.945 24 O -0.585 6.585 25 C -0.134 4.134 26 C -0.137 4.137 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.191 0.809 33 H 0.080 0.920 34 H 0.389 0.611 35 H -0.292 1.292 36 H -0.284 1.284 37 H 0.122 0.878 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.128 0.872 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.391 0.609 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.420 -1.207 1.217 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.332 5.332 3 C 0.275 3.725 4 O -0.445 6.445 5 C -0.035 4.035 6 N -0.148 5.148 7 C -0.053 4.053 8 C -0.187 4.187 9 C -0.165 4.165 10 O -0.374 6.374 11 Si 0.684 3.316 12 C -0.121 4.121 13 C -0.104 4.104 14 C -0.171 4.171 15 C -0.125 4.125 16 C -0.154 4.154 17 C -0.013 4.013 18 C 0.047 3.953 19 H 0.082 0.918 20 C -0.153 4.153 21 C -0.170 4.170 22 C 0.047 3.953 23 H 0.073 0.927 24 O -0.392 6.392 25 C -0.172 4.172 26 C -0.176 4.176 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.178 0.822 31 H 0.157 0.843 32 H 0.208 0.792 33 H 0.098 0.902 34 H 0.239 0.761 35 H -0.219 1.219 36 H -0.211 1.211 37 H 0.140 0.860 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.240 0.760 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.639 -2.078 2.079 9.125 hybrid contribution 2.456 0.034 -0.521 2.511 sum -6.183 -2.044 1.558 6.696 Atomic orbital electron populations 1.22546 0.77253 1.06087 1.03227 1.47952 1.08265 1.04654 1.72361 1.21380 0.88069 0.86612 0.76488 1.90750 1.15854 1.87480 1.50370 1.22029 0.90446 0.81489 1.09558 1.43417 1.38759 1.28297 1.04310 1.21894 0.98338 0.93170 0.91869 1.19745 1.04181 1.03047 0.91724 1.24469 0.85063 0.97988 1.08998 1.86627 1.21829 1.58531 1.70444 0.94247 0.88543 0.77403 0.71381 1.19352 1.00439 0.98693 0.93575 1.20455 0.98121 0.99170 0.92687 1.20919 1.01120 0.99571 0.95519 1.21119 0.96036 0.95314 1.00027 1.20194 1.03656 1.02362 0.89201 1.18394 0.97656 0.96190 0.89074 1.21041 0.93111 0.83401 0.97790 0.91782 1.21805 0.98225 0.97170 0.98059 1.22017 0.97960 1.05094 0.91961 1.21851 0.92355 0.96179 0.84943 0.92679 1.86459 1.39336 1.96738 1.16714 1.22051 0.98246 0.99496 0.97401 1.21887 0.98521 1.02815 0.94351 0.90793 0.88063 0.88658 0.82179 0.84293 0.79195 0.90187 0.76106 1.21918 1.21084 0.85977 0.84301 0.83685 0.85457 0.89436 0.88237 0.90689 0.88650 0.75998 0.92346 0.92574 0.92131 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.55 8.06 127.77 1.03 0.48 16 2 N -0.60 1.82 2.28 -822.60 -1.87 -0.05 16 3 C 0.49 1.32 7.28 87.65 0.64 1.96 16 4 O -0.57 -7.89 14.13 -3.03 -0.04 -7.94 16 5 C 0.09 -0.31 5.11 85.63 0.44 0.13 16 6 N -0.47 -2.30 2.27 -520.00 -1.18 -3.48 16 7 C 0.07 0.39 9.89 83.00 0.82 1.21 16 8 C -0.18 -1.61 5.61 -18.63 -0.10 -1.71 16 9 C -0.06 -0.28 3.05 71.24 0.22 -0.07 16 10 O -0.56 -5.02 12.86 -148.98 -1.92 -6.93 16 11 Si 0.78 -0.22 30.80 68.60 2.11 1.89 16 12 C -0.12 -1.40 6.35 -20.20 -0.13 -1.53 16 13 C -0.09 -0.89 10.05 22.23 0.22 -0.67 16 14 C -0.15 -1.11 9.97 22.03 0.22 -0.89 16 15 C -0.11 -0.65 10.01 22.29 0.22 -0.42 16 16 C -0.13 -0.97 10.00 22.36 0.22 -0.75 16 17 C 0.09 0.89 6.80 39.03 0.27 1.16 16 18 C 0.15 -0.15 3.05 45.00 0.14 -0.02 16 19 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 20 C -0.12 0.74 4.91 30.60 0.15 0.89 16 21 C -0.13 0.63 5.02 30.60 0.15 0.78 16 22 C 0.11 -0.14 3.47 30.59 0.11 -0.04 16 23 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 24 O -0.58 -0.36 13.32 -148.98 -1.98 -2.35 16 25 C -0.13 -0.12 5.39 30.59 0.16 0.04 16 26 C -0.14 -0.40 5.14 30.60 0.16 -0.25 16 27 H 0.07 -0.84 6.49 -2.39 -0.02 -0.85 16 28 H 0.10 -1.31 5.26 -2.39 -0.01 -1.33 16 29 H 0.10 -1.51 6.69 -2.39 -0.02 -1.52 16 30 H 0.16 -1.88 7.39 -2.39 -0.02 -1.89 16 31 H 0.14 -1.12 8.11 -2.38 -0.02 -1.14 16 32 H 0.19 -0.15 6.30 -2.91 -0.02 -0.17 16 33 H 0.08 0.16 7.96 -2.39 -0.02 0.14 16 34 H 0.39 -0.08 8.74 -74.06 -0.65 -0.72 16 35 H -0.29 -1.64 7.04 99.48 0.70 -0.94 16 36 H -0.28 -0.99 7.11 99.48 0.71 -0.28 16 37 H 0.12 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.14 0.37 8.06 -2.91 -0.02 0.34 16 39 H 0.15 0.12 8.06 -2.91 -0.02 0.10 16 40 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 41 H 0.09 -0.59 8.14 -2.39 -0.02 -0.61 16 42 H 0.10 -0.99 6.67 -2.39 -0.02 -1.01 16 43 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 44 H 0.10 -0.56 3.95 -2.39 -0.01 -0.57 16 45 H 0.39 -2.19 9.08 -74.06 -0.67 -2.86 16 46 H 0.06 0.09 8.14 -2.39 -0.02 0.07 16 47 H 0.06 0.16 7.46 -2.39 -0.02 0.15 16 48 H 0.06 0.66 5.77 -2.39 -0.01 0.65 16 49 H 0.08 0.11 8.14 -2.39 -0.02 0.09 16 Total: 0.00 -29.66 379.91 -0.25 -29.91 By element: Atomic # 1 Polarization: -11.06 SS G_CDS: -0.30 Total: -11.36 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.94 Total: 0.31 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: -3.05 Total: -3.53 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -3.94 Total: -17.22 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: 2.11 Total: 1.89 kcal Total: -29.66 -0.25 -29.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.302 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds