Wall clock time and date at job start Sun Mar 7 2021 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36763 * 125.80100 * 2 1 4 4 C 1.47257 * 126.94584 * 359.97345 * 3 2 1 5 5 O 1.21631 * 119.99785 * 24.77186 * 4 3 2 6 6 N 1.34773 * 120.00378 * 204.77956 * 4 3 2 7 7 C 1.46507 * 120.00119 * 5.69565 * 6 4 3 8 8 C 1.46503 * 120.00312 * 185.69656 * 6 4 3 9 9 H 1.08997 * 109.46839 * 299.16561 * 8 6 4 10 10 C 1.52997 * 109.47348 * 59.17010 * 8 6 4 11 11 C 1.52996 * 109.47165 * 59.99786 * 10 8 6 12 12 C 1.53002 * 109.47156 * 60.00475 * 11 10 8 13 13 H 1.08998 * 109.47166 * 59.99659 * 12 11 10 14 14 O 1.42895 * 109.47062 * 180.02562 * 12 11 10 15 15 C 1.53007 * 109.46771 * 299.99889 * 12 11 10 16 16 C 1.53000 * 109.47246 * 179.17230 * 8 6 4 17 17 C 1.46686 * 106.11581 * 179.71426 * 3 2 1 18 18 C 1.34489 * 106.33291 * 0.25828 * 17 3 2 19 19 C 1.50699 * 125.57517 * 180.02562 * 18 17 3 20 20 O 1.42901 * 109.47273 * 65.00006 * 19 18 17 21 21 Si 1.86298 * 109.47309 * 185.00130 * 19 18 17 22 22 N 1.34661 * 125.79952 * 180.15886 * 2 1 3 23 23 H 1.09004 * 109.46904 * 90.00167 * 1 2 3 24 24 H 1.08997 * 109.47474 * 209.99930 * 1 2 3 25 25 H 1.08994 * 109.47273 * 330.00902 * 1 2 3 26 26 H 1.09002 * 109.46948 * 275.90320 * 7 6 4 27 27 H 1.08996 * 109.46854 * 35.89386 * 7 6 4 28 28 H 1.08997 * 109.47204 * 155.90076 * 7 6 4 29 29 H 1.09004 * 109.46709 * 299.99959 * 10 8 6 30 30 H 1.08998 * 109.47188 * 180.02562 * 10 8 6 31 31 H 1.08998 * 109.47361 * 300.00253 * 11 10 8 32 32 H 1.09001 * 109.47070 * 180.02562 * 11 10 8 33 33 H 0.96707 * 113.99601 * 180.02562 * 14 12 11 34 34 H 1.08997 * 109.46948 * 179.97438 * 15 12 11 35 35 H 1.08998 * 109.47087 * 299.99818 * 15 12 11 36 36 H 1.09001 * 109.47408 * 59.99701 * 16 8 6 37 37 H 1.08998 * 109.47208 * 179.97438 * 16 8 6 38 38 H 1.08004 * 126.83973 * 180.22882 * 17 3 2 39 39 H 1.09001 * 109.47158 * 304.99974 * 19 18 17 40 40 H 0.96701 * 114.00024 * 59.99682 * 20 19 18 41 41 H 1.48499 * 110.00227 * 180.02562 * 21 19 18 42 42 H 1.48501 * 109.99787 * 301.31470 * 21 19 18 43 43 H 0.97001 * 124.85211 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5155 -0.0005 5 8 0.7763 2.8127 0.4403 6 7 2.6825 3.4733 -0.4897 7 6 3.9455 3.1040 -1.1339 8 6 2.3027 4.8837 -0.3772 9 1 1.3664 5.0514 -0.9094 10 6 2.1231 5.2475 1.0980 11 6 3.4374 5.0121 1.8450 12 6 4.5347 5.8861 1.2343 13 1 4.2521 6.9355 1.3179 14 8 5.7624 5.6659 1.9315 15 6 4.7143 5.5224 -0.2410 16 6 3.3999 5.7577 -0.9880 17 6 3.6881 0.6151 0.0070 18 6 3.6095 -0.7275 0.0048 19 6 4.7818 -1.6744 0.0106 20 8 5.5028 -1.5323 1.2362 21 14 4.1665 -3.4256 -0.1485 22 7 2.2947 -1.0922 -0.0030 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 4.7146 2.9668 -0.3738 27 1 3.8125 2.1749 -1.6880 28 1 4.2489 3.8956 -1.8191 29 1 1.3413 4.6248 1.5332 30 1 1.8400 6.2968 1.1817 31 1 3.7200 3.9628 1.7613 32 1 3.3093 5.2709 2.8961 33 1 6.5039 6.1890 1.5972 34 1 5.4957 6.1453 -0.6763 35 1 4.9969 4.4730 -0.3247 36 1 3.5279 5.4986 -2.0390 37 1 3.1171 6.8071 -0.9047 38 1 4.5890 1.2108 0.0124 39 1 5.4399 -1.4430 -0.8270 40 1 4.9780 -1.7231 2.0257 41 1 5.3131 -4.3693 -0.1434 42 1 3.2432 -3.7431 0.9704 43 1 1.9733 -2.0074 -0.0059 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15557736_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:43:07 Heat of formation + Delta-G solvation = -50.069037 kcal Electronic energy + Delta-G solvation = -25628.172221 eV Core-core repulsion = 22062.389052 eV Total energy + Delta-G solvation = -3565.783169 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 295.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.59989 -41.38026 -39.21243 -37.90811 -37.16661 -34.90863 -32.85003 -32.19303 -32.16912 -30.16682 -28.93876 -27.52900 -25.47765 -24.10470 -23.67926 -22.42774 -21.69053 -20.68756 -19.44807 -18.70700 -18.19188 -17.74080 -17.32215 -16.99078 -16.62792 -16.40128 -16.00883 -15.51122 -15.27699 -15.17321 -14.94610 -14.62257 -14.58024 -14.24358 -13.98244 -13.94507 -13.61341 -13.46777 -13.36221 -13.25300 -12.87287 -12.76699 -12.63789 -12.42870 -12.16157 -12.14979 -11.97165 -11.69171 -11.21222 -10.80888 -10.72145 -10.50294 -9.84870 -9.55815 -9.12885 -5.06223 0.73611 1.13109 1.27773 1.44848 1.81382 1.99881 2.26153 2.42086 3.25629 3.32498 3.54587 3.68866 3.71428 3.85733 3.99994 4.05633 4.15217 4.18967 4.22720 4.29657 4.37765 4.43249 4.45296 4.51101 4.54283 4.61973 4.64987 4.69924 4.79594 4.87363 4.92292 4.99391 5.04531 5.09973 5.12108 5.14025 5.22019 5.26899 5.35033 5.68013 5.73146 5.88501 6.38368 6.43469 6.51130 6.89081 7.30273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.114 3.886 3 C -0.262 4.262 4 C 0.586 3.414 5 O -0.582 6.582 6 N -0.600 5.600 7 C 0.068 3.932 8 C 0.148 3.852 9 H 0.069 0.931 10 C -0.128 4.128 11 C -0.105 4.105 12 C 0.107 3.893 13 H 0.061 0.939 14 O -0.590 6.590 15 C -0.174 4.174 16 C -0.117 4.117 17 C -0.139 4.139 18 C -0.022 4.022 19 C -0.049 4.049 20 O -0.542 6.542 21 Si 0.759 3.241 22 N -0.535 5.535 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.393 0.607 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.155 0.845 39 H 0.142 0.858 40 H 0.385 0.615 41 H -0.293 1.293 42 H -0.277 1.277 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.526 -1.256 -6.006 6.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.006 4.006 3 C -0.271 4.271 4 C 0.377 3.623 5 O -0.464 6.464 6 N -0.332 5.332 7 C -0.073 4.073 8 C 0.046 3.954 9 H 0.087 0.913 10 C -0.166 4.166 11 C -0.142 4.142 12 C 0.049 3.951 13 H 0.078 0.922 14 O -0.399 6.399 15 C -0.211 4.211 16 C -0.154 4.154 17 C -0.163 4.163 18 C -0.130 4.130 19 C -0.158 4.158 20 O -0.349 6.349 21 Si 0.662 3.338 22 N -0.135 5.135 23 H 0.108 0.892 24 H 0.107 0.893 25 H 0.098 0.902 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.243 0.757 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.172 0.828 39 H 0.160 0.840 40 H 0.235 0.765 41 H -0.219 1.219 42 H -0.204 1.204 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 1.051 -2.258 -5.502 6.039 hybrid contribution 0.329 0.396 1.222 1.326 sum 1.380 -1.862 -4.280 4.867 Atomic orbital electron populations 1.20629 0.86179 1.04643 1.04252 1.20501 0.94203 0.85537 1.00334 1.20189 0.94221 0.91792 1.20927 1.17660 0.83235 0.84916 0.76469 1.90689 1.22845 1.83472 1.49412 1.47691 1.21648 1.05634 1.58230 1.22514 0.84504 1.02662 0.97657 1.21060 0.98594 0.80023 0.95769 0.91261 1.21820 0.96805 1.02503 0.95509 1.21324 0.94234 0.99622 0.99066 1.21796 0.84045 0.98018 0.91270 0.92153 1.86499 1.20876 1.70659 1.61822 1.22885 0.98270 1.05330 0.94664 1.21777 0.93207 1.00260 1.00182 1.22173 0.95463 0.93022 1.05645 1.20634 0.84691 0.95471 1.12240 1.24683 0.93313 1.07664 0.90161 1.86631 1.41121 1.91067 1.16110 0.94587 0.80152 0.71800 0.87223 1.41681 1.05218 1.08706 1.57901 0.89214 0.89313 0.90157 0.91930 0.90507 0.88304 0.92198 0.89642 0.93283 0.93012 0.75678 0.89550 0.88832 0.89135 0.88902 0.82786 0.84041 0.76521 1.21937 1.20381 0.73371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.06 10.14 71.24 0.72 0.67 16 2 C 0.11 0.31 7.17 41.78 0.30 0.61 16 3 C -0.26 -1.58 5.65 -19.04 -0.11 -1.69 16 4 C 0.59 5.49 7.21 86.61 0.62 6.12 16 5 O -0.58 -9.02 13.36 -4.13 -0.06 -9.07 16 6 N -0.60 -2.15 2.25 -826.65 -1.86 -4.01 16 7 C 0.07 -0.15 6.74 127.77 0.86 0.71 16 8 C 0.15 0.33 2.90 44.99 0.13 0.46 16 9 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 10 C -0.13 -0.64 5.23 30.59 0.16 -0.48 16 11 C -0.10 -0.62 5.42 30.59 0.17 -0.45 16 12 C 0.11 0.11 3.47 30.60 0.11 0.21 16 13 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 14 O -0.59 -1.92 13.32 -148.98 -1.98 -3.91 16 15 C -0.17 0.67 4.89 30.60 0.15 0.82 16 16 C -0.12 0.50 4.91 30.60 0.15 0.65 16 17 C -0.14 -0.33 8.75 23.62 0.21 -0.13 16 18 C -0.02 0.02 6.09 40.98 0.25 0.27 16 19 C -0.05 0.16 2.98 71.24 0.21 0.38 16 20 O -0.54 -0.45 12.88 -148.98 -1.92 -2.37 16 21 Si 0.76 -4.20 30.96 68.60 2.12 -2.07 16 22 N -0.53 1.17 5.41 -171.07 -0.93 0.25 16 23 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 25 H 0.08 0.52 6.34 -2.39 -0.02 0.51 16 26 H 0.06 -0.13 5.35 -2.39 -0.01 -0.14 16 27 H 0.08 -0.18 6.28 -2.39 -0.02 -0.20 16 28 H 0.10 -0.62 4.95 -2.39 -0.01 -0.63 16 29 H 0.06 0.68 6.30 -2.38 -0.02 0.67 16 30 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.05 0.48 7.60 -2.39 -0.02 0.46 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.39 -2.15 9.08 -74.05 -0.67 -2.82 16 34 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.09 -0.28 3.66 -2.39 -0.01 -0.28 16 36 H 0.09 -0.61 6.89 -2.39 -0.02 -0.62 16 37 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.15 0.14 5.77 -2.91 -0.02 0.12 16 39 H 0.14 -0.85 7.96 -2.39 -0.02 -0.87 16 40 H 0.39 -1.45 8.70 -74.06 -0.64 -2.10 16 41 H -0.29 -0.73 7.11 99.48 0.71 -0.02 16 42 H -0.28 0.57 7.11 99.48 0.71 1.28 16 43 H 0.43 -3.22 6.72 -92.71 -0.62 -3.84 16 Total: 0.00 -21.03 324.70 -1.52 -22.55 By element: Atomic # 1 Polarization: -8.68 SS G_CDS: -0.83 Total: -9.51 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 3.93 Total: 8.14 kcal Atomic # 7 Polarization: -0.98 SS G_CDS: -2.79 Total: -3.76 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -3.96 Total: -15.35 kcal Atomic # 14 Polarization: -4.20 SS G_CDS: 2.12 Total: -2.07 kcal Total: -21.03 -1.52 -22.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15557736_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.521 kcal (2) G-P(sol) polarization free energy of solvation -21.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds