Wall clock time and date at job start Sun Mar 7 2021 07:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37873 * 126.45446 * 2 1 4 4 C 1.46679 * 126.23451 * 359.97438 * 3 2 1 5 5 O 1.21694 * 119.99708 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99739 * 180.02562 * 4 3 2 7 7 C 1.46507 * 119.99919 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.84616 * 23.79616 * 7 6 4 9 9 C 1.53780 * 113.61381 * 154.99336 * 7 6 4 10 10 C 1.53782 * 87.07715 * 139.98393 * 9 7 6 11 11 H 1.09005 * 113.61056 * 220.01583 * 10 9 7 12 12 N 1.46495 * 113.61728 * 89.11869 * 10 9 7 13 13 C 1.36884 * 126.40278 * 119.99908 * 12 10 9 14 14 C 1.34665 * 106.82178 * 180.02562 * 13 12 10 15 15 N 1.34123 * 108.01795 * 359.97438 * 14 13 12 16 16 C 1.30499 * 109.26346 * 359.72699 * 15 14 13 17 17 C 1.53774 * 113.61287 * 252.49160 * 7 6 4 18 18 N 1.37652 * 107.52885 * 179.73917 * 3 2 1 19 19 C 1.35531 * 108.64523 * 0.42130 * 18 3 2 20 20 C 1.50700 * 125.56127 * 179.83139 * 19 18 3 21 21 O 1.42903 * 109.46837 * 64.72203 * 20 19 18 22 22 Si 1.86300 * 109.46849 * 184.71749 * 20 19 18 23 23 C 1.35446 * 108.87215 * 359.57200 * 19 18 3 24 24 H 1.09000 * 109.47584 * 270.03030 * 1 2 3 25 25 H 1.08999 * 109.47258 * 30.02992 * 1 2 3 26 26 H 1.09000 * 109.47209 * 150.02861 * 1 2 3 27 27 H 0.97005 * 120.00608 * 359.97438 * 6 4 3 28 28 H 1.09006 * 113.61415 * 254.52870 * 9 7 6 29 29 H 1.08999 * 113.61929 * 25.34873 * 9 7 6 30 30 H 1.07998 * 126.58541 * 0.02894 * 13 12 10 31 31 H 1.07999 * 125.98833 * 180.02562 * 14 13 12 32 32 H 1.07997 * 125.65969 * 180.29246 * 16 15 14 33 33 H 1.08994 * 113.61830 * 334.57055 * 17 7 6 34 34 H 1.09005 * 113.61233 * 105.46999 * 17 7 6 35 35 H 0.97002 * 125.67696 * 180.28335 * 18 3 2 36 36 H 1.08997 * 109.47760 * 304.72017 * 20 19 18 37 37 H 0.96700 * 114.00022 * 60.00263 * 21 20 19 38 38 H 1.48506 * 110.00048 * 58.68772 * 22 20 19 39 39 H 1.48502 * 109.99996 * 180.02562 * 22 20 19 40 40 H 1.08005 * 126.06760 * 180.24419 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3262 1.1090 0.0000 4 6 1.8898 2.5093 -0.0005 5 8 0.7025 2.7765 -0.0015 6 7 2.8036 3.4999 -0.0010 7 6 2.3677 4.8986 -0.0021 8 1 1.3642 5.0295 0.4029 9 6 3.4034 5.8671 0.5931 10 6 3.0211 6.8430 -0.5321 11 1 3.8730 7.3722 -0.9593 12 7 1.9122 7.7347 -0.1841 13 6 1.9510 9.1025 -0.1455 14 6 0.7229 9.5171 0.2197 15 7 -0.0450 8.4321 0.3988 16 6 0.6588 7.3611 0.1528 17 6 2.5895 5.6118 -1.3462 18 7 3.6283 0.6625 0.0060 19 6 3.6217 -0.6928 0.0002 20 6 4.8434 -1.5752 0.0002 21 8 5.5626 -1.3929 1.2215 22 14 4.3222 -3.3572 -0.1535 23 6 2.3380 -1.1247 0.0002 24 1 -0.3634 0.0005 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5134 27 1 3.7500 3.2869 -0.0006 28 1 3.1438 6.2258 1.5892 29 1 4.4290 5.5037 0.5282 30 1 2.8028 9.7287 -0.3658 31 1 0.4109 10.5433 0.3456 32 1 0.2996 6.3443 0.2117 33 1 3.3926 5.1793 -1.9428 34 1 1.6728 5.7646 -1.9159 35 1 4.4190 1.2244 0.0112 36 1 5.4833 -1.3099 -0.8413 37 1 5.0533 -1.6107 2.0142 38 1 3.5459 -3.5533 -1.4042 39 1 5.5179 -4.2378 -0.1540 40 1 2.0137 -2.1549 -0.0001 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15608530_13940406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:03:34 Heat of formation + Delta-G solvation = 77.728781 kcal Electronic energy + Delta-G solvation = -24248.999367 eV Core-core repulsion = 20647.447495 eV Total energy + Delta-G solvation = -3601.551872 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.27659 -42.64577 -40.87241 -39.27180 -37.85077 -35.27656 -33.57012 -32.84912 -31.60187 -30.21886 -28.23043 -27.50022 -27.24485 -25.87035 -23.07049 -22.50762 -21.94254 -21.55404 -21.29277 -20.41180 -19.57632 -18.27870 -18.14075 -17.53280 -16.89306 -16.45478 -16.37620 -16.01467 -15.69224 -15.55668 -15.32419 -15.10540 -14.83307 -14.73610 -14.41781 -14.04456 -13.95896 -13.84329 -13.75158 -13.65234 -13.50867 -13.23644 -12.95221 -12.38741 -12.22805 -12.07723 -12.07269 -11.09113 -10.84545 -10.79681 -10.56195 -10.37094 -9.88198 -9.43222 -9.23781 -5.10820 0.27437 1.05731 1.07298 1.46192 1.58478 1.64719 1.78269 1.86311 2.08043 2.23992 2.31326 2.83513 3.08674 3.21972 3.34693 3.44667 3.50962 3.63543 3.81253 3.85061 4.06292 4.09591 4.12171 4.15909 4.18347 4.29894 4.44389 4.53852 4.58161 4.68846 4.71558 4.78633 4.82077 4.98853 5.12001 5.18330 5.30985 5.39096 5.57629 5.83380 5.83915 6.13866 6.22641 6.30402 6.30906 7.00650 7.19168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.060 4.060 3 C -0.060 4.060 4 C 0.593 3.407 5 O -0.518 6.518 6 N -0.724 5.724 7 C 0.121 3.879 8 H 0.124 0.876 9 C -0.153 4.153 10 C 0.111 3.889 11 H 0.120 0.880 12 N -0.446 5.446 13 C -0.054 4.054 14 C -0.028 4.028 15 N -0.490 5.490 16 C 0.180 3.820 17 C -0.158 4.158 18 N -0.525 5.525 19 C 0.028 3.972 20 C -0.055 4.055 21 O -0.543 6.543 22 Si 0.720 3.280 23 C -0.200 4.200 24 H 0.071 0.929 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.396 0.604 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.175 0.825 31 H 0.171 0.829 32 H 0.203 0.797 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.415 0.585 36 H 0.114 0.886 37 H 0.384 0.616 38 H -0.252 1.252 39 H -0.253 1.253 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.953 -2.485 0.332 6.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.069 4.069 3 C -0.172 4.172 4 C 0.381 3.619 5 O -0.393 6.393 6 N -0.375 5.375 7 C 0.016 3.984 8 H 0.141 0.859 9 C -0.192 4.192 10 C 0.006 3.994 11 H 0.138 0.862 12 N -0.129 5.129 13 C -0.186 4.186 14 C -0.176 4.176 15 N -0.208 5.208 16 C -0.102 4.102 17 C -0.197 4.197 18 N -0.121 5.121 19 C -0.090 4.090 20 C -0.166 4.166 21 O -0.349 6.349 22 Si 0.620 3.380 23 C -0.225 4.225 24 H 0.090 0.910 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.230 0.770 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.192 0.808 31 H 0.189 0.811 32 H 0.220 0.780 33 H 0.125 0.875 34 H 0.106 0.894 35 H 0.253 0.747 36 H 0.132 0.868 37 H 0.232 0.768 38 H -0.177 1.177 39 H -0.178 1.178 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.985 -2.766 -0.343 5.712 hybrid contribution 2.124 0.862 -0.547 2.356 sum 7.109 -1.905 -0.891 7.413 Atomic orbital electron populations 1.20411 0.88745 1.03305 1.02695 1.19964 0.96100 0.90316 1.00485 1.20175 0.83599 0.93386 1.20077 1.17074 0.85873 0.83032 0.75904 1.90853 1.15834 1.83116 1.49484 1.45819 1.09284 1.05757 1.76590 1.22787 1.00186 0.79165 0.96234 0.85889 1.23825 1.00543 0.95221 0.99633 1.22082 0.89222 0.90516 0.97597 0.86207 1.45289 1.10387 1.06332 1.50933 1.22759 1.01820 0.82976 1.11049 1.22394 0.90551 0.98530 1.06084 1.70361 1.32521 0.97848 1.20033 1.25128 0.81090 1.00338 1.03658 1.23934 1.04016 0.94011 0.97747 1.41842 1.07066 1.06597 1.56641 1.21116 0.96896 0.83276 1.07741 1.24957 0.92082 1.09251 0.90263 1.86500 1.42034 1.91130 1.15215 0.93984 0.82814 0.73327 0.87898 1.20620 0.90777 0.99127 1.11955 0.91009 0.90030 0.91557 0.77019 0.89302 0.87510 0.80765 0.81145 0.78020 0.87510 0.89376 0.74710 0.86820 0.76806 1.17656 1.17773 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.11 9.83 36.01 0.35 0.25 16 2 C -0.06 -0.08 6.21 -104.16 -0.65 -0.73 16 3 C -0.06 -0.04 7.06 -81.98 -0.58 -0.62 16 4 C 0.59 0.77 7.79 -12.86 -0.10 0.67 16 5 O -0.52 -2.38 14.40 5.19 0.07 -2.31 16 6 N -0.72 1.59 5.35 -54.32 -0.29 1.29 16 7 C 0.12 -0.27 3.73 -67.12 -0.25 -0.52 16 8 H 0.12 -0.03 4.97 -51.93 -0.26 -0.29 16 9 C -0.15 0.59 7.54 -25.92 -0.20 0.40 16 10 C 0.11 -0.34 4.88 -67.12 -0.33 -0.67 16 11 H 0.12 -0.57 8.14 -51.93 -0.42 -0.99 16 12 N -0.45 -0.05 2.94 -110.59 -0.33 -0.37 16 13 C -0.05 -0.03 11.58 -16.56 -0.19 -0.22 16 14 C -0.03 -0.08 11.87 -17.82 -0.21 -0.29 16 15 N -0.49 -2.50 11.25 -14.67 -0.16 -2.66 16 16 C 0.18 0.43 11.18 -90.37 -1.01 -0.59 16 17 C -0.16 0.47 7.30 -25.92 -0.19 0.28 16 18 N -0.52 0.85 5.99 -5.70 -0.03 0.81 16 19 C 0.03 -0.03 6.46 -81.95 -0.53 -0.56 16 20 C -0.06 0.12 3.08 36.01 0.11 0.24 16 21 O -0.54 1.07 12.88 -35.23 -0.45 0.61 16 22 Si 0.72 -1.90 30.56 -169.99 -5.19 -7.09 16 23 C -0.20 0.08 9.27 -39.98 -0.37 -0.29 16 24 H 0.07 0.06 8.14 -51.93 -0.42 -0.36 16 25 H 0.08 0.23 6.48 -51.93 -0.34 -0.11 16 26 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 27 H 0.40 -1.94 7.86 -40.82 -0.32 -2.26 16 28 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 29 H 0.11 -0.63 8.12 -51.93 -0.42 -1.06 16 30 H 0.18 -0.43 8.06 -52.49 -0.42 -0.86 16 31 H 0.17 0.14 8.06 -52.49 -0.42 -0.28 16 32 H 0.20 0.16 5.87 -52.49 -0.31 -0.15 16 33 H 0.11 -0.46 8.14 -51.93 -0.42 -0.89 16 34 H 0.09 -0.11 8.02 -51.93 -0.42 -0.52 16 35 H 0.42 -1.71 8.19 -40.82 -0.33 -2.04 16 36 H 0.11 -0.26 7.96 -51.93 -0.41 -0.67 16 37 H 0.38 -2.05 8.70 45.56 0.40 -1.65 16 38 H -0.25 0.00 7.11 56.52 0.40 0.40 16 39 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 40 H 0.15 -0.36 6.19 -52.48 -0.32 -0.68 16 LS Contribution 334.55 15.07 5.04 5.04 Total: 0.00 -10.16 334.55 -10.38 -20.54 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: -4.89 Total: -13.20 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -4.14 Total: -2.66 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -0.82 Total: -0.93 kcal Atomic # 8 Polarization: -1.31 SS G_CDS: -0.38 Total: -1.69 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.19 Total: -7.09 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -10.16 -10.38 -20.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608530_13940406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.267 kcal (2) G-P(sol) polarization free energy of solvation -10.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds