Wall clock time and date at job start Sun Mar 7 2021 07:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.46897 * 2 1 4 4 C 1.50695 * 109.47032 * 240.00154 * 2 1 3 5 5 C 1.38243 * 119.97464 * 120.00186 * 4 2 1 6 6 C 1.38289 * 120.11231 * 180.02562 * 5 4 2 7 7 C 1.38117 * 120.05983 * 359.97438 * 6 5 4 8 8 C 1.38755 * 119.94118 * 0.02562 * 7 6 5 9 9 O 1.35898 * 120.05839 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99730 * 0.02562 * 9 8 7 11 11 C 1.53000 * 109.47419 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47587 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47558 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99695 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99788 * 180.02562 * 15 13 12 17 17 H 1.08997 * 112.85136 * 25.33378 * 16 15 13 18 18 C 1.53781 * 113.61482 * 156.53355 * 16 15 13 19 19 C 1.53784 * 87.08334 * 139.98185 * 18 16 15 20 20 H 1.09002 * 113.61036 * 219.93693 * 19 18 16 21 21 N 1.46496 * 113.61934 * 89.11508 * 19 18 16 22 22 C 1.36873 * 126.39973 * 119.99737 * 21 19 18 23 23 C 1.34671 * 106.82005 * 180.02562 * 22 21 19 24 24 N 1.34125 * 108.01793 * 0.02562 * 23 22 21 25 25 C 1.30500 * 109.25957 * 359.72604 * 24 23 22 26 26 C 1.53787 * 113.61566 * 254.13684 * 16 15 13 27 27 C 1.38166 * 119.97278 * 300.00128 * 4 2 1 28 28 H 0.96706 * 114.00122 * 300.00042 * 1 2 3 29 29 H 1.09001 * 109.47189 * 119.99924 * 2 1 3 30 30 H 1.48501 * 109.99722 * 178.67939 * 3 2 1 31 31 H 1.48496 * 110.00350 * 300.00059 * 3 2 1 32 32 H 1.08000 * 119.94011 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.96911 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.03415 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47521 * 300.00502 * 10 9 8 36 36 H 1.09007 * 109.47162 * 60.00566 * 10 9 8 37 37 H 1.09000 * 109.47211 * 300.00725 * 11 10 9 38 38 H 1.09007 * 109.46464 * 60.00172 * 11 10 9 39 39 H 1.09000 * 109.47414 * 300.00573 * 12 11 10 40 40 H 1.09004 * 109.46601 * 60.00500 * 12 11 10 41 41 H 0.96998 * 120.00289 * 0.02562 * 15 13 12 42 42 H 1.09004 * 113.61504 * 254.52721 * 18 16 15 43 43 H 1.09001 * 113.61649 * 25.34585 * 18 16 15 44 44 H 1.08003 * 126.59276 * 359.96640 * 22 21 19 45 45 H 1.08001 * 125.98883 * 179.97438 * 23 22 21 46 46 H 1.07992 * 125.65464 * 180.29783 * 25 24 23 47 47 H 1.08998 * 113.61294 * 334.57294 * 26 16 15 48 48 H 1.09002 * 113.61509 * 105.46546 * 26 16 15 49 49 H 1.08002 * 120.02702 * 0.27001 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7261 -0.0380 -2.1401 6 6 3.1881 -0.6869 -3.2704 7 6 2.8569 -2.0092 -3.4931 8 6 2.0593 -2.6863 -2.5817 9 8 1.7316 -3.9872 -2.7987 10 6 2.2435 -4.5958 -3.9860 11 6 1.7730 -6.0499 -4.0573 12 6 2.3215 -6.7017 -5.3281 13 6 1.8576 -8.1338 -5.3988 14 8 1.1568 -8.5882 -4.5194 15 7 2.2207 -8.9092 -6.4396 16 6 1.7692 -10.3012 -6.5084 17 1 0.8441 -10.4738 -5.9585 18 6 1.7534 -10.8738 -7.9356 19 6 2.2955 -12.1807 -7.3329 20 1 3.0552 -12.6629 -7.9479 21 7 1.2462 -13.1050 -6.8959 22 6 1.0425 -14.3781 -7.3553 23 6 -0.0214 -14.8669 -6.6899 24 7 -0.4558 -13.9178 -5.8476 25 6 0.3021 -12.8615 -5.9615 26 6 2.8737 -11.3235 -6.1923 27 6 1.5971 -2.0331 -1.4486 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5138 0.8900 30 1 3.5345 1.7703 0.0322 31 1 1.5614 2.4679 -1.2084 32 1 2.9858 0.9961 -1.9680 33 1 3.8092 -0.1596 -3.9793 34 1 3.2183 -2.5157 -4.3758 35 1 1.8801 -4.0527 -4.8584 36 1 3.3330 -4.5674 -3.9681 37 1 2.1367 -6.5927 -3.1849 38 1 0.6834 -6.0787 -4.0750 39 1 1.9582 -6.1590 -6.2008 40 1 3.4110 -6.6729 -5.3100 41 1 2.7809 -8.5457 -7.1430 42 1 0.7526 -10.9694 -8.3567 43 1 2.4518 -10.3806 -8.6117 44 1 1.6227 -14.8917 -8.1076 45 1 -0.4503 -15.8504 -6.8135 46 1 0.1914 -11.9441 -5.4027 47 1 3.8800 -10.9543 -6.3904 48 1 2.7761 -11.7814 -5.2080 49 1 0.9726 -2.5567 -0.7399 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15608530_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:08 Heat of formation + Delta-G solvation = 20.008741 kcal Electronic energy + Delta-G solvation = -29812.170110 eV Core-core repulsion = 25515.557650 eV Total energy + Delta-G solvation = -4296.612460 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.25756 -41.34488 -41.12440 -39.59708 -39.05673 -37.33053 -35.09733 -34.98612 -32.78788 -32.58224 -31.27417 -30.21849 -28.69213 -27.23054 -26.88752 -26.11588 -23.76561 -23.57432 -22.50103 -22.11421 -21.75528 -21.61097 -20.95385 -18.94084 -18.41989 -18.28619 -18.21159 -17.58263 -17.54881 -17.37870 -16.97630 -16.54121 -16.14885 -15.91348 -15.79263 -15.48018 -15.36666 -15.02375 -14.82538 -14.72504 -14.55104 -14.28783 -14.03387 -13.99947 -13.83936 -13.77941 -13.57351 -13.44607 -13.24322 -13.12082 -12.61245 -12.51303 -12.35160 -12.25365 -12.05618 -12.02811 -11.73550 -11.69071 -11.00492 -10.83965 -10.55279 -10.40646 -10.29681 -9.86257 -9.42763 -9.23344 -4.97129 0.21031 0.40621 1.07676 1.26200 1.46105 1.63850 1.65858 1.76932 1.97290 2.24216 2.31646 2.64781 2.85310 3.09646 3.34027 3.36810 3.44365 3.53827 3.71946 3.72576 3.76289 3.81726 3.84199 3.86099 3.96600 4.03108 4.10812 4.11831 4.18723 4.19362 4.20815 4.23459 4.28697 4.33847 4.46235 4.51616 4.54659 4.59517 4.62659 4.75029 4.83749 4.89896 4.97539 5.09046 5.21711 5.26094 5.31786 5.35034 5.44739 5.67503 5.83914 6.22894 6.24873 6.40395 6.61990 7.03861 7.19636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.544 6.544 2 C -0.074 4.074 3 Si 0.688 3.312 4 C -0.036 4.036 5 C -0.164 4.164 6 C -0.072 4.072 7 C -0.206 4.206 8 C 0.134 3.866 9 O -0.310 6.310 10 C 0.059 3.941 11 C -0.106 4.106 12 C -0.138 4.138 13 C 0.516 3.484 14 O -0.530 6.530 15 N -0.723 5.723 16 C 0.118 3.882 17 H 0.120 0.880 18 C -0.152 4.152 19 C 0.110 3.890 20 H 0.120 0.880 21 N -0.446 5.446 22 C -0.054 4.054 23 C -0.028 4.028 24 N -0.490 5.490 25 C 0.179 3.821 26 C -0.157 4.157 27 C -0.122 4.122 28 H 0.383 0.617 29 H 0.077 0.923 30 H -0.255 1.255 31 H -0.250 1.250 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.403 0.597 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.175 0.825 45 H 0.171 0.829 46 H 0.203 0.797 47 H 0.107 0.893 48 H 0.086 0.914 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 3.434 -3.849 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.185 4.185 3 Si 0.589 3.411 4 C -0.036 4.036 5 C -0.181 4.181 6 C -0.090 4.090 7 C -0.224 4.224 8 C 0.089 3.911 9 O -0.223 6.223 10 C -0.016 4.016 11 C -0.144 4.144 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.405 6.405 15 N -0.374 5.374 16 C 0.013 3.987 17 H 0.137 0.863 18 C -0.191 4.191 19 C 0.005 3.995 20 H 0.138 0.862 21 N -0.129 5.129 22 C -0.186 4.186 23 C -0.176 4.176 24 N -0.208 5.208 25 C -0.103 4.103 26 C -0.197 4.197 27 C -0.140 4.140 28 H 0.231 0.769 29 H 0.095 0.905 30 H -0.180 1.180 31 H -0.175 1.175 32 H 0.137 0.863 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.238 0.762 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.193 0.807 45 H 0.188 0.812 46 H 0.219 0.781 47 H 0.126 0.874 48 H 0.105 0.895 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.681 3.262 -3.586 7.468 hybrid contribution 1.306 -0.303 -1.452 1.976 sum 6.987 2.959 -5.038 9.108 Atomic orbital electron populations 1.86502 1.17001 1.81862 1.49694 1.24733 0.85910 1.10506 0.97305 0.95341 0.80541 0.77822 0.87371 1.19133 0.96422 0.93175 0.94853 1.20773 1.02105 0.99337 0.95924 1.20847 0.97903 0.93847 0.96406 1.21283 1.03688 0.96346 1.01126 1.18993 0.94290 0.83496 0.94348 1.86086 1.70892 1.22307 1.43046 1.22826 0.98565 0.93907 0.86314 1.21236 1.03123 0.92293 0.97718 1.21535 1.03070 0.92750 1.00435 1.20657 0.79748 0.87996 0.81370 1.90768 1.36845 1.74924 1.37968 1.45947 1.54018 1.11910 1.25565 1.22762 0.98673 0.80304 0.97009 0.86283 1.23807 1.03853 0.94589 0.96876 1.22142 0.89634 0.89596 0.98150 0.86222 1.45292 1.24434 1.12216 1.30979 1.22761 1.03777 0.86182 1.05892 1.22396 0.97207 1.00128 0.97854 1.70362 1.26889 1.00582 1.22968 1.25118 0.89102 1.00701 0.95333 1.23957 1.00311 0.96043 0.99354 1.20252 1.02595 0.93911 0.97282 0.76908 0.90490 1.17990 1.17514 0.86330 0.85247 0.85106 0.91748 0.91776 0.89727 0.89688 0.88258 0.88278 0.76164 0.89441 0.87366 0.80747 0.81154 0.78071 0.87421 0.89539 0.84562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.50 12.74 -35.23 -0.45 -0.95 16 2 C -0.07 -0.05 2.81 36.00 0.10 0.05 16 3 Si 0.69 -0.50 29.79 -169.99 -5.06 -5.57 16 4 C -0.04 -0.11 5.42 -104.65 -0.57 -0.68 16 5 C -0.16 -0.46 8.67 -39.56 -0.34 -0.81 16 6 C -0.07 -0.12 10.04 -39.61 -0.40 -0.52 16 7 C -0.21 -0.32 9.04 -39.43 -0.36 -0.68 16 8 C 0.13 0.43 6.69 -39.21 -0.26 0.17 16 9 O -0.31 -0.91 10.14 -19.42 -0.20 -1.10 16 10 C 0.06 -0.05 4.74 37.16 0.18 0.13 16 11 C -0.11 0.07 4.87 -26.73 -0.13 -0.06 16 12 C -0.14 0.47 5.70 -27.88 -0.16 0.31 16 13 C 0.52 -0.30 7.83 -10.99 -0.09 -0.39 16 14 O -0.53 -2.18 15.60 5.56 0.09 -2.10 16 15 N -0.72 2.42 5.36 -53.02 -0.28 2.14 16 16 C 0.12 -0.29 3.71 -67.12 -0.25 -0.54 16 17 H 0.12 -0.03 5.01 -51.93 -0.26 -0.29 16 18 C -0.15 0.63 7.54 -25.92 -0.20 0.43 16 19 C 0.11 -0.35 4.88 -67.03 -0.33 -0.67 16 20 H 0.12 -0.58 8.14 -51.93 -0.42 -1.00 16 21 N -0.45 -0.07 2.94 -110.50 -0.33 -0.40 16 22 C -0.05 -0.03 11.58 -16.56 -0.19 -0.22 16 23 C -0.03 -0.08 11.87 -17.81 -0.21 -0.29 16 24 N -0.49 -2.58 11.25 -14.67 -0.16 -2.74 16 25 C 0.18 0.45 11.18 -90.37 -1.01 -0.56 16 26 C -0.16 0.50 7.31 -25.83 -0.19 0.31 16 27 C -0.12 -0.45 9.55 -39.43 -0.38 -0.83 16 28 H 0.38 -1.65 8.74 45.56 0.40 -1.25 16 29 H 0.08 -0.08 7.96 -51.93 -0.41 -0.49 16 30 H -0.25 -0.39 7.11 56.52 0.40 0.01 16 31 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 32 H 0.12 0.25 4.87 -52.49 -0.26 -0.01 16 33 H 0.13 -0.10 8.06 -52.49 -0.42 -0.52 16 34 H 0.13 -0.13 6.30 -52.49 -0.33 -0.46 16 35 H 0.06 -0.13 7.66 -51.93 -0.40 -0.53 16 36 H 0.06 -0.14 7.66 -51.93 -0.40 -0.54 16 37 H 0.08 0.08 8.10 -51.93 -0.42 -0.34 16 38 H 0.08 0.09 8.10 -51.93 -0.42 -0.33 16 39 H 0.10 -0.53 8.14 -51.93 -0.42 -0.95 16 40 H 0.10 -0.54 8.14 -51.93 -0.42 -0.96 16 41 H 0.40 -2.59 8.71 -40.82 -0.36 -2.95 16 42 H 0.09 -0.23 8.14 -51.93 -0.42 -0.65 16 43 H 0.11 -0.68 8.11 -51.93 -0.42 -1.10 16 44 H 0.18 -0.43 8.06 -52.48 -0.42 -0.86 16 45 H 0.17 0.15 8.06 -52.49 -0.42 -0.27 16 46 H 0.20 0.21 5.87 -52.49 -0.31 -0.10 16 47 H 0.11 -0.51 8.14 -51.93 -0.42 -0.93 16 48 H 0.09 -0.10 8.02 -51.93 -0.42 -0.52 16 49 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 403.52 15.07 6.08 6.08 Total: 0.00 -12.62 403.52 -12.09 -24.71 By element: Atomic # 1 Polarization: -8.21 SS G_CDS: -7.00 Total: -15.22 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -4.77 Total: -4.86 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -0.77 Total: -1.00 kcal Atomic # 8 Polarization: -3.59 SS G_CDS: -0.56 Total: -4.15 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -5.06 Total: -5.57 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -12.62 -12.09 -24.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608530_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.721 kcal (2) G-P(sol) polarization free energy of solvation -12.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds