Wall clock time and date at job start Sun Mar 7 2021 07:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86300 * 109.46897 * 2 1 4 4 C 1.50695 * 109.47032 * 240.00154 * 2 1 3 5 5 C 1.38243 * 119.97464 * 120.00186 * 4 2 1 6 6 C 1.38289 * 120.11231 * 180.02562 * 5 4 2 7 7 C 1.38117 * 120.05983 * 359.97438 * 6 5 4 8 8 C 1.38755 * 119.94118 * 0.02562 * 7 6 5 9 9 O 1.35898 * 120.05839 * 179.97438 * 8 7 6 10 10 C 1.42902 * 116.99730 * 0.02562 * 9 8 7 11 11 C 1.53000 * 109.47419 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.47587 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47558 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99695 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00035 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99788 * 180.02562 * 15 13 12 17 17 H 1.08997 * 112.85136 * 25.33378 * 16 15 13 18 18 C 1.53781 * 113.61482 * 156.53355 * 16 15 13 19 19 C 1.53784 * 87.08334 * 139.98185 * 18 16 15 20 20 H 1.09002 * 113.61036 * 219.93693 * 19 18 16 21 21 N 1.46496 * 113.61934 * 89.11508 * 19 18 16 22 22 C 1.36873 * 126.39973 * 119.99737 * 21 19 18 23 23 C 1.34671 * 106.82005 * 180.02562 * 22 21 19 24 24 N 1.34125 * 108.01793 * 0.02562 * 23 22 21 25 25 C 1.30500 * 109.25957 * 359.72604 * 24 23 22 26 26 C 1.53787 * 113.61566 * 254.13684 * 16 15 13 27 27 C 1.38166 * 119.97278 * 300.00128 * 4 2 1 28 28 H 0.96706 * 114.00122 * 300.00042 * 1 2 3 29 29 H 1.09001 * 109.47189 * 119.99924 * 2 1 3 30 30 H 1.48501 * 109.99722 * 178.67939 * 3 2 1 31 31 H 1.48496 * 110.00350 * 300.00059 * 3 2 1 32 32 H 1.08000 * 119.94011 * 359.97438 * 5 4 2 33 33 H 1.08000 * 119.96911 * 180.02562 * 6 5 4 34 34 H 1.07995 * 120.03415 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47521 * 300.00502 * 10 9 8 36 36 H 1.09007 * 109.47162 * 60.00566 * 10 9 8 37 37 H 1.09000 * 109.47211 * 300.00725 * 11 10 9 38 38 H 1.09007 * 109.46464 * 60.00172 * 11 10 9 39 39 H 1.09000 * 109.47414 * 300.00573 * 12 11 10 40 40 H 1.09004 * 109.46601 * 60.00500 * 12 11 10 41 41 H 0.96998 * 120.00289 * 0.02562 * 15 13 12 42 42 H 1.09004 * 113.61504 * 254.52721 * 18 16 15 43 43 H 1.09001 * 113.61649 * 25.34585 * 18 16 15 44 44 H 1.08003 * 126.59276 * 359.96640 * 22 21 19 45 45 H 1.08001 * 125.98883 * 179.97438 * 23 22 21 46 46 H 1.07992 * 125.65464 * 180.29783 * 25 24 23 47 47 H 1.08998 * 113.61294 * 334.57294 * 26 16 15 48 48 H 1.09002 * 113.61509 * 105.46546 * 26 16 15 49 49 H 1.08002 * 120.02702 * 0.27001 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 2.7261 -0.0380 -2.1401 6 6 3.1881 -0.6869 -3.2704 7 6 2.8569 -2.0092 -3.4931 8 6 2.0593 -2.6863 -2.5817 9 8 1.7316 -3.9872 -2.7987 10 6 2.2435 -4.5958 -3.9860 11 6 1.7730 -6.0499 -4.0573 12 6 2.3215 -6.7017 -5.3281 13 6 1.8576 -8.1338 -5.3988 14 8 1.1568 -8.5882 -4.5194 15 7 2.2207 -8.9092 -6.4396 16 6 1.7692 -10.3012 -6.5084 17 1 0.8441 -10.4738 -5.9585 18 6 1.7534 -10.8738 -7.9356 19 6 2.2955 -12.1807 -7.3329 20 1 3.0552 -12.6629 -7.9479 21 7 1.2462 -13.1050 -6.8959 22 6 1.0425 -14.3781 -7.3553 23 6 -0.0214 -14.8669 -6.6899 24 7 -0.4558 -13.9178 -5.8476 25 6 0.3021 -12.8615 -5.9615 26 6 2.8737 -11.3235 -6.1923 27 6 1.5971 -2.0331 -1.4486 28 1 -0.3934 0.4417 0.7651 29 1 1.7923 -0.5138 0.8900 30 1 3.5345 1.7703 0.0322 31 1 1.5614 2.4679 -1.2084 32 1 2.9858 0.9961 -1.9680 33 1 3.8092 -0.1596 -3.9793 34 1 3.2183 -2.5157 -4.3758 35 1 1.8801 -4.0527 -4.8584 36 1 3.3330 -4.5674 -3.9681 37 1 2.1367 -6.5927 -3.1849 38 1 0.6834 -6.0787 -4.0750 39 1 1.9582 -6.1590 -6.2008 40 1 3.4110 -6.6729 -5.3100 41 1 2.7809 -8.5457 -7.1430 42 1 0.7526 -10.9694 -8.3567 43 1 2.4518 -10.3806 -8.6117 44 1 1.6227 -14.8917 -8.1076 45 1 -0.4503 -15.8504 -6.8135 46 1 0.1914 -11.9441 -5.4027 47 1 3.8800 -10.9543 -6.3904 48 1 2.7761 -11.7814 -5.2080 49 1 0.9726 -2.5567 -0.7399 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608530_4549616.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:07 Heat of formation + Delta-G solvation = 17.686567 kcal Electronic energy + Delta-G solvation = -29812.270807 eV Core-core repulsion = 25515.557650 eV Total energy + Delta-G solvation = -4296.713157 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.173 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.28779 -41.40218 -41.09290 -39.51729 -39.12181 -37.36902 -35.05380 -34.91696 -32.81552 -32.67925 -31.37237 -30.30462 -28.61339 -26.95778 -26.92729 -26.01264 -23.83513 -23.61883 -22.50118 -22.16420 -21.79130 -21.52162 -20.88997 -19.00333 -18.43665 -18.21571 -18.08191 -17.55078 -17.49747 -17.34720 -17.05967 -16.49886 -16.16946 -15.92798 -15.75011 -15.46430 -15.36371 -15.04850 -14.86350 -14.73652 -14.63792 -14.39273 -14.09035 -13.94911 -13.71094 -13.57638 -13.53210 -13.35882 -13.25463 -12.95187 -12.63211 -12.48237 -12.32050 -12.20757 -12.10897 -11.85931 -11.78006 -11.66250 -11.02105 -10.96002 -10.60701 -10.43804 -10.14897 -9.96910 -9.52637 -9.38341 -4.93792 0.08069 0.24148 1.01726 1.27294 1.55507 1.64556 1.73578 1.87156 1.96681 2.13954 2.32156 2.52115 3.08386 3.33743 3.37095 3.54713 3.61744 3.64868 3.71874 3.78963 3.81942 3.83380 3.84870 3.97264 3.99484 4.09751 4.15753 4.23283 4.30524 4.34614 4.38223 4.39564 4.41210 4.56159 4.57338 4.58725 4.62655 4.72389 4.73283 4.82846 4.85833 4.97764 4.99825 5.07934 5.17166 5.21354 5.27779 5.30194 5.42974 5.58321 5.77094 6.20146 6.32603 6.49892 6.87125 7.07243 7.21889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.089 4.089 3 Si 0.787 3.213 4 C -0.052 4.052 5 C -0.184 4.184 6 C -0.073 4.073 7 C -0.205 4.205 8 C 0.123 3.877 9 O -0.334 6.334 10 C 0.055 3.945 11 C -0.102 4.102 12 C -0.127 4.127 13 C 0.508 3.492 14 O -0.590 6.590 15 N -0.704 5.704 16 C 0.106 3.894 17 H 0.087 0.913 18 C -0.134 4.134 19 C 0.104 3.896 20 H 0.151 0.849 21 N -0.440 5.440 22 C -0.038 4.038 23 C -0.065 4.065 24 N -0.540 5.540 25 C 0.166 3.834 26 C -0.149 4.149 27 C -0.147 4.147 28 H 0.404 0.596 29 H 0.092 0.908 30 H -0.284 1.284 31 H -0.295 1.295 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.423 0.577 42 H 0.072 0.928 43 H 0.143 0.857 44 H 0.212 0.788 45 H 0.179 0.821 46 H 0.203 0.797 47 H 0.134 0.866 48 H 0.060 0.940 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.991 4.246 -6.395 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.198 4.198 3 Si 0.692 3.308 4 C -0.053 4.053 5 C -0.202 4.202 6 C -0.091 4.091 7 C -0.223 4.223 8 C 0.077 3.923 9 O -0.248 6.248 10 C -0.019 4.019 11 C -0.141 4.141 12 C -0.166 4.166 13 C 0.296 3.704 14 O -0.469 6.469 15 N -0.357 5.357 16 C 0.000 4.000 17 H 0.105 0.895 18 C -0.173 4.173 19 C 0.001 3.999 20 H 0.168 0.832 21 N -0.122 5.122 22 C -0.171 4.171 23 C -0.212 4.212 24 N -0.259 5.259 25 C -0.117 4.117 26 C -0.188 4.188 27 C -0.166 4.166 28 H 0.255 0.745 29 H 0.110 0.890 30 H -0.211 1.211 31 H -0.223 1.223 32 H 0.138 0.862 33 H 0.174 0.826 34 H 0.178 0.822 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.261 0.739 42 H 0.091 0.909 43 H 0.161 0.839 44 H 0.228 0.772 45 H 0.196 0.804 46 H 0.219 0.781 47 H 0.152 0.848 48 H 0.079 0.921 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 8.373 4.076 -6.148 11.159 hybrid contribution 0.475 -0.587 -0.702 1.031 sum 8.848 3.489 -6.850 11.721 Atomic orbital electron populations 1.86449 1.17226 1.82529 1.51344 1.25018 0.85969 1.11827 0.96957 0.94289 0.77217 0.74600 0.84709 1.19510 0.96558 0.93242 0.95960 1.20994 1.02778 0.99686 0.96740 1.21225 0.97525 0.94062 0.96295 1.21585 1.02856 0.96321 1.01555 1.19188 0.94669 0.83754 0.94639 1.86065 1.71529 1.22404 1.44847 1.23052 0.99825 0.93287 0.85725 1.21162 1.01563 0.92783 0.98565 1.21539 1.04785 0.90564 0.99756 1.21238 0.78904 0.89223 0.81003 1.90755 1.39679 1.76191 1.40317 1.45797 1.53316 1.11332 1.25221 1.22727 0.97961 0.81019 0.98261 0.89476 1.23779 1.03909 0.93646 0.95926 1.22485 0.89285 0.89711 0.98440 0.83162 1.45490 1.24280 1.12613 1.29865 1.23275 1.02690 0.85940 1.05158 1.22746 0.98902 1.00644 0.98895 1.70267 1.28819 1.02062 1.24781 1.25109 0.89880 1.00341 0.96331 1.23942 1.01235 0.95510 0.98146 1.20365 1.03639 0.94563 0.98048 0.74487 0.89027 1.21136 1.22288 0.86161 0.82636 0.82164 0.89880 0.89573 0.92071 0.92325 0.85385 0.85093 0.73860 0.90932 0.83861 0.77172 0.80376 0.78063 0.84829 0.92085 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -1.51 12.74 -148.98 -1.90 -3.40 16 2 C -0.09 -0.18 2.81 71.23 0.20 0.02 16 3 Si 0.79 -0.89 29.79 68.60 2.04 1.15 16 4 C -0.05 -0.40 5.42 -19.88 -0.11 -0.51 16 5 C -0.18 -1.15 8.67 22.28 0.19 -0.96 16 6 C -0.07 -0.20 10.04 22.25 0.22 0.03 16 7 C -0.20 -0.47 9.04 22.36 0.20 -0.27 16 8 C 0.12 0.89 6.69 22.51 0.15 1.04 16 9 O -0.33 -2.35 10.14 -92.40 -0.94 -3.28 16 10 C 0.06 -0.12 4.74 71.98 0.34 0.22 16 11 C -0.10 0.04 4.87 30.59 0.15 0.19 16 12 C -0.13 1.03 5.70 29.85 0.17 1.20 16 13 C 0.51 -0.43 7.83 87.66 0.69 0.25 16 14 O -0.59 -6.46 15.60 -3.03 -0.05 -6.51 16 15 N -0.70 5.46 5.36 -440.04 -2.36 3.10 16 16 C 0.11 -0.53 3.71 45.52 0.17 -0.36 16 17 H 0.09 0.19 5.01 -2.39 -0.01 0.18 16 18 C -0.13 1.34 7.54 31.12 0.23 1.57 16 19 C 0.10 -0.82 4.88 45.58 0.22 -0.60 16 20 H 0.15 -2.02 8.14 -2.39 -0.02 -2.04 16 21 N -0.44 -0.20 2.94 -503.51 -1.48 -1.69 16 22 C -0.04 -0.03 11.58 83.09 0.96 0.93 16 23 C -0.07 -0.47 11.87 83.52 0.99 0.52 16 24 N -0.54 -7.12 11.25 -200.31 -2.25 -9.37 16 25 C 0.17 1.23 11.18 180.26 2.01 3.24 16 26 C -0.15 1.05 7.31 31.18 0.23 1.28 16 27 C -0.15 -1.38 9.55 22.37 0.21 -1.17 16 28 H 0.40 -3.40 8.74 -74.05 -0.65 -4.04 16 29 H 0.09 -0.14 7.96 -2.39 -0.02 -0.16 16 30 H -0.28 -0.99 7.11 99.48 0.71 -0.28 16 31 H -0.30 -1.80 7.11 99.48 0.71 -1.10 16 32 H 0.12 0.59 4.87 -2.91 -0.01 0.57 16 33 H 0.16 -0.52 8.06 -2.91 -0.02 -0.54 16 34 H 0.16 -0.73 6.30 -2.91 -0.02 -0.75 16 35 H 0.08 -0.48 7.66 -2.39 -0.02 -0.50 16 36 H 0.09 -0.56 7.66 -2.38 -0.02 -0.58 16 37 H 0.06 0.25 8.10 -2.39 -0.02 0.23 16 38 H 0.06 0.28 8.10 -2.38 -0.02 0.26 16 39 H 0.13 -1.72 8.14 -2.39 -0.02 -1.74 16 40 H 0.13 -1.85 8.14 -2.39 -0.02 -1.87 16 41 H 0.42 -6.66 8.71 -92.71 -0.81 -7.47 16 42 H 0.07 -0.43 8.14 -2.38 -0.02 -0.45 16 43 H 0.14 -2.40 8.11 -2.39 -0.02 -2.42 16 44 H 0.21 -1.57 8.06 -2.91 -0.02 -1.59 16 45 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 46 H 0.20 1.20 5.87 -2.91 -0.02 1.18 16 47 H 0.13 -1.63 8.14 -2.39 -0.02 -1.65 16 48 H 0.06 -0.07 8.02 -2.39 -0.02 -0.09 16 49 H 0.13 1.25 8.06 -2.91 -0.02 1.23 16 Total: 0.00 -36.27 403.52 -0.12 -36.39 By element: Atomic # 1 Polarization: -22.59 SS G_CDS: -0.43 Total: -23.02 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 7.24 Total: 6.64 kcal Atomic # 7 Polarization: -1.87 SS G_CDS: -6.09 Total: -7.96 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -2.88 Total: -13.19 kcal Atomic # 14 Polarization: -0.89 SS G_CDS: 2.04 Total: 1.15 kcal Total: -36.27 -0.12 -36.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608530_4549616.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.075 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds