Wall clock time and date at job start Sun Mar 7 2021 07:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50699 * 109.46603 * 119.99410 * 2 1 3 5 5 C 1.38250 * 119.94363 * 244.72997 * 4 2 1 6 6 C 1.38172 * 120.05449 * 179.72884 * 5 4 2 7 7 C 1.38703 * 119.94354 * 0.54454 * 6 5 4 8 8 O 1.35903 * 120.05638 * 179.70879 * 7 6 5 9 9 C 1.42894 * 117.00038 * 0.02562 * 8 7 6 10 10 C 1.50696 * 109.47500 * 180.02562 * 9 8 7 11 11 O 1.21285 * 119.99517 * 359.97438 * 10 9 8 12 12 N 1.34768 * 120.00227 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00185 * 179.97438 * 12 10 9 14 14 H 1.08998 * 112.84654 * 25.33373 * 13 12 10 15 15 C 1.53782 * 113.61626 * 156.52879 * 13 12 10 16 16 C 1.53781 * 87.07899 * 139.98096 * 15 13 12 17 17 H 1.08995 * 113.61615 * 220.01696 * 16 15 13 18 18 N 1.46507 * 113.61012 * 89.12023 * 16 15 13 19 19 C 1.36881 * 126.39669 * 119.71742 * 18 16 15 20 20 C 1.34668 * 106.81475 * 179.83820 * 19 18 16 21 21 N 1.34128 * 108.02339 * 0.41887 * 20 19 18 22 22 C 1.30508 * 109.25422 * 359.73190 * 21 20 19 23 23 C 1.53778 * 113.61451 * 254.13856 * 13 12 10 24 24 C 1.38762 * 119.88925 * 359.72752 * 7 6 5 25 25 N 1.48007 * 120.02722 * 180.02562 * 24 7 6 26 26 O 1.21793 * 119.99951 * 179.97438 * 25 24 7 27 27 O 1.21794 * 119.99864 * 359.97438 * 25 24 7 28 28 C 1.38121 * 119.94211 * 0.02562 * 24 7 6 29 29 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 30 30 H 1.08996 * 109.47455 * 239.99290 * 2 1 3 31 31 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 32 32 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 33 33 H 1.08003 * 119.97006 * 359.97438 * 5 4 2 34 34 H 1.08000 * 120.02384 * 180.27848 * 6 5 4 35 35 H 1.09007 * 109.47025 * 300.00436 * 9 8 7 36 36 H 1.09004 * 109.46877 * 60.00343 * 9 8 7 37 37 H 0.96998 * 120.00580 * 0.02562 * 12 10 9 38 38 H 1.08997 * 113.61680 * 254.53182 * 15 13 12 39 39 H 1.09001 * 113.60935 * 25.35061 * 15 13 12 40 40 H 1.08001 * 126.59175 * 359.96982 * 19 18 16 41 41 H 1.08003 * 125.99149 * 180.11212 * 20 19 18 42 42 H 1.07993 * 125.64920 * 179.97438 * 22 21 20 43 43 H 1.08993 * 113.61826 * 334.56594 * 23 13 12 44 44 H 1.09004 * 113.61210 * 105.47017 * 23 13 12 45 45 H 1.07998 * 119.96813 * 180.02562 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 1.2306 5 6 2.6434 -0.0121 2.1880 6 6 3.1001 -0.6598 3.3199 7 6 2.8533 -2.0141 3.4896 8 8 3.3066 -2.6548 4.5991 9 6 4.0299 -1.8715 5.5505 10 6 4.4501 -2.7448 6.7046 11 8 4.1584 -3.9220 6.7118 12 7 5.1491 -2.2174 7.7290 13 6 5.5572 -3.0662 8.8512 14 1 5.6446 -4.1175 8.5768 15 6 6.7747 -2.5271 9.6206 16 6 6.0611 -2.9752 10.9071 17 1 6.1644 -2.2702 11.7319 18 7 6.3631 -4.3552 11.2953 19 6 6.9470 -4.7606 12.4651 20 6 7.0346 -6.1034 12.4119 21 7 6.5268 -6.5062 11.2376 22 6 6.1225 -5.4643 10.5635 23 6 4.7391 -2.8299 10.1317 24 6 2.1432 -2.7139 2.5244 25 7 1.8776 -4.1590 2.7027 26 8 1.2539 -4.7726 1.8555 27 8 2.2828 -4.7345 3.6967 28 6 1.6844 -2.0607 1.3972 29 1 -0.3934 0.4417 0.7649 30 1 1.7924 -0.5139 -0.8899 31 1 3.5346 1.7703 0.0322 32 1 1.5616 2.4678 -1.2086 33 1 2.8395 1.0414 2.0530 34 1 3.6525 -0.1129 4.0696 35 1 4.9145 -1.4479 5.0749 36 1 3.3934 -1.0660 5.9169 37 1 5.3815 -1.2757 7.7238 38 1 7.6957 -3.0739 9.4191 39 1 6.8977 -1.4469 9.5416 40 1 7.2726 -4.1258 13.2759 41 1 7.4466 -6.7434 13.1781 42 1 5.6709 -5.4857 9.5828 43 1 4.3038 -1.8326 10.1939 44 1 4.0192 -3.6209 10.3421 45 1 1.1313 -2.6048 0.6460 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608530_4549638.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 07:04:31 Heat of formation + Delta-G solvation = 35.723642 kcal Electronic energy + Delta-G solvation = -33258.789245 eV Core-core repulsion = 28442.917037 eV Total energy + Delta-G solvation = -4815.872208 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.135 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.30564 -43.26199 -41.79017 -40.98267 -39.79484 -39.01214 -37.60681 -37.36377 -35.11712 -33.49057 -32.89977 -32.24057 -30.32035 -29.88781 -27.82477 -26.92140 -26.71447 -25.98445 -24.10722 -22.90031 -22.49003 -22.33209 -21.67196 -20.97540 -20.52634 -19.78140 -19.20372 -18.64794 -18.53630 -18.11956 -17.98516 -17.58265 -17.37033 -17.04931 -16.36144 -16.29253 -16.08989 -15.89020 -15.67800 -15.49825 -15.30336 -15.12645 -14.84086 -14.69646 -14.08210 -14.04400 -13.86361 -13.76457 -13.58469 -13.53294 -13.23185 -13.03769 -12.71992 -12.38595 -12.29330 -12.25334 -12.20530 -12.18719 -11.97481 -11.84538 -11.04275 -10.95406 -10.83371 -10.58070 -10.55606 -10.20207 -9.80448 -9.50330 -5.00590 -1.32495 -0.24600 0.14876 0.34900 1.03925 1.20766 1.27177 1.42961 1.65393 1.76685 2.03080 2.05004 2.16244 2.31914 3.10073 3.11776 3.24948 3.36086 3.39509 3.51787 3.58013 3.63527 3.70971 3.71217 3.78681 3.85015 3.93878 4.02051 4.03705 4.26935 4.30116 4.35057 4.40428 4.51182 4.58346 4.61524 4.63189 4.74641 4.76443 4.84079 4.87225 4.98108 5.07385 5.18435 5.29454 5.37873 5.76178 5.79347 6.23093 6.40027 6.44377 6.74149 7.09996 7.15489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.084 4.084 3 Si 0.803 3.197 4 C -0.151 4.151 5 C -0.003 4.003 6 C -0.187 4.187 7 C 0.194 3.806 8 O -0.294 6.294 9 C 0.024 3.976 10 C 0.506 3.494 11 O -0.567 6.567 12 N -0.693 5.693 13 C 0.108 3.892 14 H 0.085 0.915 15 C -0.131 4.131 16 C 0.103 3.897 17 H 0.153 0.847 18 N -0.440 5.440 19 C -0.036 4.036 20 C -0.067 4.067 21 N -0.542 5.542 22 C 0.165 3.835 23 C -0.150 4.150 24 C -0.106 4.106 25 N 0.034 4.966 26 O -0.206 6.206 27 O -0.173 6.173 28 C -0.005 4.005 29 H 0.398 0.602 30 H 0.107 0.893 31 H -0.266 1.266 32 H -0.307 1.307 33 H 0.192 0.808 34 H 0.210 0.790 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.428 0.572 38 H 0.072 0.928 39 H 0.150 0.850 40 H 0.213 0.787 41 H 0.178 0.822 42 H 0.202 0.798 43 H 0.139 0.861 44 H 0.058 0.942 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.275 21.771 4.725 22.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.192 4.192 3 Si 0.706 3.294 4 C -0.152 4.152 5 C -0.020 4.020 6 C -0.205 4.205 7 C 0.144 3.856 8 O -0.204 6.204 9 C -0.053 4.053 10 C 0.292 3.708 11 O -0.444 6.444 12 N -0.348 5.348 13 C 0.003 3.997 14 H 0.103 0.897 15 C -0.170 4.170 16 C -0.001 4.001 17 H 0.171 0.829 18 N -0.122 5.122 19 C -0.169 4.169 20 C -0.214 4.214 21 N -0.261 5.261 22 C -0.117 4.117 23 C -0.189 4.189 24 C -0.191 4.191 25 N 0.544 4.456 26 O -0.413 6.413 27 O -0.387 6.387 28 C -0.024 4.024 29 H 0.248 0.752 30 H 0.124 0.876 31 H -0.192 1.192 32 H -0.235 1.235 33 H 0.209 0.791 34 H 0.227 0.773 35 H 0.162 0.838 36 H 0.167 0.833 37 H 0.267 0.733 38 H 0.091 0.909 39 H 0.167 0.833 40 H 0.230 0.770 41 H 0.195 0.805 42 H 0.219 0.781 43 H 0.157 0.843 44 H 0.077 0.923 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.638 20.950 3.432 21.730 hybrid contribution -0.184 -1.180 -0.254 1.221 sum 4.454 19.771 3.178 20.514 Atomic orbital electron populations 1.86538 1.17238 1.82244 1.50633 1.25503 0.85487 1.12191 0.96001 0.93863 0.77824 0.72263 0.85439 1.20460 1.02849 0.92098 0.99837 1.21736 0.88894 1.01663 0.89687 1.21843 1.06272 0.89772 1.02619 1.18970 0.89571 0.92229 0.84792 1.86476 1.67435 1.38068 1.28381 1.23167 1.00250 0.93813 0.88083 1.20622 0.78115 0.88060 0.83982 1.90872 1.55145 1.19042 1.79333 1.45507 1.55692 1.14184 1.19414 1.22763 0.96149 0.95944 0.84889 0.89685 1.23796 0.96529 1.05017 0.91626 1.22513 0.97677 0.79961 0.99899 0.82908 1.45503 1.44403 1.07719 1.14601 1.23273 1.04730 0.96846 0.92035 1.22748 1.07218 0.94419 0.97002 1.70273 1.17080 1.31361 1.07376 1.25104 1.05206 0.81275 1.00147 1.23969 0.95821 1.05341 0.93732 1.20887 1.15986 0.79653 1.02571 1.43928 0.97905 1.04346 0.99455 1.94505 1.40399 1.68028 1.38358 1.94676 1.53712 1.70936 1.19383 1.20849 0.93294 0.95233 0.93059 0.75155 0.87554 1.19167 1.23530 0.79143 0.77297 0.83799 0.83270 0.73281 0.90911 0.83261 0.77048 0.80493 0.78141 0.84297 0.92299 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.27 12.83 -148.98 -1.91 0.36 16 2 C -0.08 0.56 2.80 71.24 0.20 0.76 16 3 Si 0.80 -8.88 29.80 68.60 2.04 -6.83 16 4 C -0.15 0.98 5.35 -19.85 -0.11 0.88 16 5 C 0.00 0.03 8.66 22.26 0.19 0.23 16 6 C -0.19 2.41 9.04 22.37 0.20 2.61 16 7 C 0.19 -0.18 6.67 22.51 0.15 -0.03 16 8 O -0.29 -0.80 7.68 -63.43 -0.49 -1.29 16 9 C 0.02 -0.24 5.22 71.23 0.37 0.13 16 10 C 0.51 -1.05 7.91 87.66 0.69 -0.36 16 11 O -0.57 -7.28 16.12 15.99 0.26 -7.03 16 12 N -0.69 7.62 5.36 -440.04 -2.36 5.26 16 13 C 0.11 -0.75 3.71 45.52 0.17 -0.58 16 14 H 0.09 0.11 5.00 -2.39 -0.01 0.09 16 15 C -0.13 1.64 7.54 31.12 0.23 1.87 16 16 C 0.10 -1.00 4.88 45.57 0.22 -0.77 16 17 H 0.15 -2.38 8.14 -2.39 -0.02 -2.39 16 18 N -0.44 0.18 2.94 -503.49 -1.48 -1.30 16 19 C -0.04 0.00 11.58 83.09 0.96 0.96 16 20 C -0.07 -0.48 11.87 83.52 0.99 0.51 16 21 N -0.54 -7.22 11.25 -200.31 -2.25 -9.47 16 22 C 0.16 1.19 11.19 180.26 2.02 3.21 16 23 C -0.15 1.34 7.31 31.18 0.23 1.57 16 24 C -0.11 -0.68 6.87 36.48 0.25 -0.43 16 25 N 0.03 0.57 4.45 -46.24 -0.21 0.36 16 26 O -0.21 -3.93 18.45 18.90 0.35 -3.58 16 27 O -0.17 -3.74 17.24 25.61 0.44 -3.30 16 28 C -0.01 -0.01 9.19 22.25 0.20 0.20 16 29 H 0.40 -5.22 8.70 -74.06 -0.64 -5.86 16 30 H 0.11 -0.46 7.96 -2.39 -0.02 -0.48 16 31 H -0.27 2.31 7.11 99.48 0.71 3.02 16 32 H -0.31 0.31 7.11 99.48 0.71 1.02 16 33 H 0.19 -4.14 4.90 -2.91 -0.01 -4.15 16 34 H 0.21 -4.98 6.30 -2.91 -0.02 -4.99 16 35 H 0.14 -2.73 7.66 -2.38 -0.02 -2.75 16 36 H 0.15 -2.97 7.66 -2.38 -0.02 -2.99 16 37 H 0.43 -8.98 8.71 -92.71 -0.81 -9.78 16 38 H 0.07 -0.59 8.14 -2.39 -0.02 -0.60 16 39 H 0.15 -3.03 8.11 -2.39 -0.02 -3.05 16 40 H 0.21 -1.76 8.06 -2.91 -0.02 -1.79 16 41 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.20 1.22 5.86 -2.91 -0.02 1.21 16 43 H 0.14 -2.09 8.14 -2.39 -0.02 -2.11 16 44 H 0.06 -0.13 8.02 -2.39 -0.02 -0.15 16 45 H 0.15 0.58 7.61 -2.91 -0.02 0.56 16 Total: 0.00 -51.72 387.15 1.05 -50.67 By element: Atomic # 1 Polarization: -34.29 SS G_CDS: -0.32 Total: -34.61 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.98 Total: 10.75 kcal Atomic # 7 Polarization: 1.15 SS G_CDS: -6.30 Total: -5.15 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -1.35 Total: -14.84 kcal Atomic # 14 Polarization: -8.88 SS G_CDS: 2.04 Total: -6.83 kcal Total: -51.72 1.05 -50.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608530_4549638.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.394 kcal (2) G-P(sol) polarization free energy of solvation -51.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds