Wall clock time and date at job start Sun Mar 7 2021 08:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35713 * 116.99921 * 2 1 4 4 C 1.38678 * 119.86292 * 0.02562 * 3 2 1 5 5 C 1.38447 * 120.03115 * 179.97438 * 4 3 2 6 6 O 1.35655 * 120.12347 * 179.97438 * 5 4 3 7 7 C 1.42898 * 116.99518 * 0.02562 * 6 5 4 8 8 C 1.40308 * 119.75853 * 0.02562 * 5 4 3 9 9 C 1.47296 * 120.13325 * 180.02562 * 8 5 4 10 10 O 1.21626 * 120.00001 * 359.97438 * 9 8 5 11 11 N 1.34780 * 119.99850 * 179.97438 * 9 8 5 12 12 C 1.46492 * 119.99930 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47696 * 34.99761 * 12 11 9 14 14 C 1.53002 * 109.47204 * 155.00105 * 12 11 9 15 15 C 1.53000 * 109.47233 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47060 * 299.99657 * 15 14 12 17 17 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 18 18 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 19 19 N 1.30711 * 125.52764 * 300.02951 * 18 16 15 20 20 N 1.40445 * 106.79241 * 179.97438 * 19 18 16 21 21 C 1.34427 * 106.35687 * 359.97438 * 20 19 18 22 22 C 1.50700 * 125.96218 * 179.97438 * 21 20 19 23 23 N 1.30830 * 108.07363 * 359.75667 * 21 20 19 24 24 C 1.52999 * 109.47317 * 59.99960 * 16 15 14 25 25 C 1.52997 * 109.47244 * 274.99857 * 12 11 9 26 26 C 1.39856 * 119.72625 * 0.27263 * 8 5 4 27 27 C 1.37548 * 119.96608 * 359.42656 * 26 8 5 28 28 C 1.50699 * 119.87911 * 180.29663 * 27 26 8 29 29 O 1.42892 * 109.46955 * 255.27988 * 28 27 26 30 30 Si 1.86305 * 109.46954 * 15.28050 * 28 27 26 31 31 H 1.08997 * 109.47261 * 300.00082 * 1 2 3 32 32 H 1.08999 * 109.47004 * 59.99672 * 1 2 3 33 33 H 1.09002 * 109.47420 * 179.97438 * 1 2 3 34 34 H 1.07996 * 119.98655 * 359.97438 * 4 3 2 35 35 H 1.09008 * 109.46682 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47611 * 299.99651 * 7 6 5 37 37 H 1.09000 * 109.47360 * 60.00035 * 7 6 5 38 38 H 0.96998 * 119.99716 * 359.97438 * 11 9 8 39 39 H 1.08992 * 109.47063 * 59.99836 * 14 12 11 40 40 H 1.09004 * 109.46733 * 299.99549 * 14 12 11 41 41 H 1.09002 * 109.47398 * 59.99826 * 15 14 12 42 42 H 1.09001 * 109.47194 * 180.02562 * 15 14 12 43 43 H 0.97000 * 126.81910 * 179.97438 * 20 19 18 44 44 H 1.08993 * 109.47247 * 90.02687 * 22 21 20 45 45 H 1.09004 * 109.46678 * 210.02279 * 22 21 20 46 46 H 1.08999 * 109.47128 * 330.02332 * 22 21 20 47 47 H 1.09000 * 109.47486 * 180.02562 * 24 16 15 48 48 H 1.09002 * 109.46716 * 60.00091 * 24 16 15 49 49 H 1.09002 * 109.47153 * 300.00242 * 25 12 11 50 50 H 1.09001 * 109.47289 * 60.00326 * 25 12 11 51 51 H 1.07997 * 120.01543 * 179.70481 * 26 8 5 52 52 H 1.08994 * 109.47108 * 135.27843 * 28 27 26 53 53 H 0.96705 * 114.00362 * 59.99941 * 29 28 27 54 54 H 1.48499 * 110.00176 * 58.68143 * 30 28 27 55 55 H 1.48502 * 109.99437 * 180.02562 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2870 2.3705 0.0005 5 6 1.9119 3.6059 0.0011 6 8 1.1722 4.7430 0.0011 7 6 -0.2489 4.5924 0.0011 8 6 3.3132 3.6775 0.0005 9 6 3.9866 4.9875 0.0017 10 8 3.3278 6.0100 0.0026 11 7 5.3328 5.0532 0.0017 12 6 6.0025 6.3561 0.0022 13 1 5.4200 7.0639 0.5919 14 6 7.3985 6.2117 0.6117 15 6 8.0977 7.5725 0.6129 16 6 8.2191 8.0848 -0.8237 17 1 8.8018 7.3773 -1.4137 18 6 8.9084 9.4248 -0.8227 19 7 8.4813 10.4982 -0.2111 20 7 9.4184 11.5121 -0.4689 21 6 10.3713 10.9598 -1.2396 22 6 11.5928 11.6610 -1.7755 23 7 10.0555 9.7060 -1.4395 24 6 6.8232 8.2292 -1.4333 25 6 6.1239 6.8678 -1.4345 26 6 4.0678 2.5000 -0.0063 27 6 3.4352 1.2786 -0.0006 28 6 4.2503 0.0111 -0.0012 29 8 4.2141 -0.5777 -1.3027 30 14 6.0134 0.4063 0.4528 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 0.2087 2.3111 0.0005 35 1 -0.7184 5.5761 0.0006 36 1 -0.5561 4.0432 -0.8889 37 1 -0.5560 4.0431 0.8910 38 1 5.8581 4.2378 0.0013 39 1 7.9809 5.5039 0.0220 40 1 7.3120 5.8472 1.6354 41 1 7.5151 8.2800 1.2029 42 1 9.0924 7.4695 1.0467 43 1 9.3847 12.4287 -0.1534 44 1 12.4116 11.5597 -1.0634 45 1 11.8809 11.2131 -2.7266 46 1 11.3692 12.7175 -1.9243 47 1 6.9097 8.5937 -2.4569 48 1 6.2406 8.9366 -0.8432 49 1 6.7064 6.1600 -2.0243 50 1 5.1294 6.9707 -1.8688 51 1 5.1466 2.5498 -0.0116 52 1 3.8359 -0.6877 0.7254 53 1 4.5683 -0.0104 -2.0011 54 1 6.0616 1.0484 1.7910 55 1 6.8278 -0.8355 0.4551 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608548_12297780.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 08:42:22 Heat of formation + Delta-G solvation = -35.243372 kcal Electronic energy + Delta-G solvation = -38669.543538 eV Core-core repulsion = 33675.351825 eV Total energy + Delta-G solvation = -4994.191712 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.199 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.18917 -42.09444 -40.82646 -40.03118 -39.06126 -38.40710 -36.95156 -35.65768 -33.75519 -33.34300 -32.23388 -31.98342 -31.77850 -30.26739 -28.98914 -28.67161 -28.08298 -26.11611 -25.23204 -24.08128 -23.72171 -22.79803 -22.18924 -21.44231 -21.38860 -20.54236 -20.00094 -18.89992 -18.72455 -18.19551 -17.92675 -17.25589 -17.12346 -16.70834 -16.63901 -16.58106 -16.27976 -16.05037 -15.82404 -15.76905 -15.58426 -15.33538 -15.23596 -15.05346 -14.86504 -14.57970 -14.17749 -14.09327 -13.96107 -13.88477 -13.62192 -13.56072 -13.37294 -13.21626 -13.16056 -12.80869 -12.66596 -12.54520 -12.52426 -12.26310 -12.21757 -12.18186 -12.07596 -11.95670 -11.63897 -11.57126 -11.36959 -11.05551 -10.99379 -10.82498 -10.42505 -10.35873 -10.03868 -9.89940 -9.17398 -5.01748 -0.23850 0.09561 0.59239 1.33570 1.68397 1.73212 1.79396 1.82888 2.03486 2.12425 2.13753 2.20057 2.64437 2.97828 3.46576 3.53415 3.56144 3.65614 3.74467 3.75161 3.78094 3.85263 3.89471 4.11523 4.14615 4.18742 4.24198 4.25712 4.26696 4.27514 4.28196 4.28944 4.44945 4.46743 4.53352 4.54443 4.62684 4.65455 4.66951 4.69149 4.73472 4.77038 4.88232 4.93049 5.03223 5.05906 5.10905 5.11871 5.15792 5.21437 5.27970 5.31565 5.35981 5.42027 5.47011 5.61431 6.03694 6.18967 6.29708 6.63926 6.87251 7.09511 7.34060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.314 6.314 3 C 0.211 3.789 4 C -0.313 4.313 5 C 0.216 3.784 6 O -0.304 6.304 7 C 0.011 3.989 8 C -0.225 4.225 9 C 0.564 3.436 10 O -0.565 6.565 11 N -0.712 5.712 12 C 0.149 3.851 13 H 0.062 0.938 14 C -0.116 4.116 15 C -0.099 4.099 16 C 0.009 3.991 17 H 0.112 0.888 18 C 0.226 3.774 19 N -0.344 5.344 20 N -0.481 5.481 21 C 0.284 3.716 22 C -0.076 4.076 23 N -0.572 5.572 24 C -0.097 4.097 25 C -0.118 4.118 26 C 0.011 3.989 27 C -0.204 4.204 28 C -0.062 4.062 29 O -0.554 6.554 30 Si 0.776 3.224 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.118 0.882 34 H 0.161 0.839 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.414 0.586 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.453 0.547 44 H 0.107 0.893 45 H 0.100 0.900 46 H 0.108 0.892 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.092 0.908 50 H 0.050 0.950 51 H 0.171 0.829 52 H 0.097 0.903 53 H 0.393 0.607 54 H -0.273 1.273 55 H -0.296 1.296 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 0.386 -1.739 3.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.226 6.226 3 C 0.163 3.837 4 C -0.332 4.332 5 C 0.167 3.833 6 O -0.214 6.214 7 C -0.084 4.084 8 C -0.229 4.229 9 C 0.353 3.647 10 O -0.445 6.445 11 N -0.365 5.365 12 C 0.044 3.956 13 H 0.080 0.920 14 C -0.154 4.154 15 C -0.138 4.138 16 C -0.011 4.011 17 H 0.130 0.870 18 C -0.057 4.057 19 N -0.173 5.173 20 N -0.201 5.201 21 C 0.006 3.994 22 C -0.135 4.135 23 N -0.302 5.302 24 C -0.137 4.137 25 C -0.157 4.157 26 C -0.007 4.007 27 C -0.205 4.205 28 C -0.171 4.171 29 O -0.362 6.362 30 Si 0.680 3.320 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.137 0.863 34 H 0.178 0.822 35 H 0.130 0.870 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.252 0.748 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.301 0.699 44 H 0.126 0.874 45 H 0.119 0.881 46 H 0.126 0.874 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.111 0.889 50 H 0.069 0.931 51 H 0.188 0.812 52 H 0.115 0.885 53 H 0.243 0.757 54 H -0.199 1.199 55 H -0.224 1.224 Dipole moment (debyes) X Y Z Total from point charges 2.982 0.281 -0.618 3.058 hybrid contribution -1.344 0.393 0.468 1.476 sum 1.638 0.674 -0.150 1.778 Atomic orbital electron populations 1.23453 0.76199 1.05949 1.02570 1.86140 1.23568 1.26310 1.86579 1.18963 0.91868 0.84041 0.88817 1.21406 1.02030 0.90761 1.19001 1.19011 0.90440 0.85404 0.88486 1.86370 1.20602 1.28409 1.86060 1.23456 0.76834 1.05516 1.02561 1.19187 0.90767 0.93937 1.19052 1.18024 0.82672 0.88220 0.75825 1.90828 1.65727 1.37032 1.50879 1.45796 1.05331 1.10037 1.75342 1.20937 0.93728 0.84372 0.96537 0.92019 1.21776 0.93305 0.97576 1.02747 1.21424 1.01272 0.96867 0.94238 1.19703 0.94895 0.87601 0.98946 0.86985 1.24609 0.91251 0.96603 0.93218 1.77929 1.14858 0.97943 1.26566 1.48008 1.17621 1.13734 1.40694 1.25206 0.93813 0.89607 0.90735 1.20629 0.89454 1.00356 1.03107 1.70398 1.16428 1.14663 1.28745 1.21403 0.93983 0.97652 1.00634 1.21833 1.00464 0.96539 0.96839 1.20874 0.99717 0.88664 0.91456 1.19629 0.91297 0.96390 1.13191 1.25090 1.09902 0.93142 0.88980 1.86506 1.87230 1.45681 1.16774 0.94281 0.72928 0.81939 0.82869 0.91326 0.91261 0.86330 0.82185 0.86963 0.91043 0.91196 0.74822 0.87830 0.89807 0.92590 0.90719 0.69898 0.87429 0.88097 0.87354 0.91953 0.92955 0.88910 0.93113 0.81240 0.88545 0.75730 1.19895 1.22362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.05 9.80 113.37 1.11 1.06 16 2 O -0.31 -1.08 9.80 -90.34 -0.89 -1.96 16 3 C 0.21 0.70 6.67 22.60 0.15 0.85 16 4 C -0.31 -0.80 8.01 22.42 0.18 -0.62 16 5 C 0.22 1.43 6.70 22.82 0.15 1.58 16 6 O -0.30 -2.78 8.56 -68.74 -0.59 -3.37 16 7 C 0.01 0.00 9.81 113.37 1.11 1.11 16 8 C -0.23 -1.10 5.89 -20.00 -0.12 -1.22 16 9 C 0.56 4.32 7.72 86.63 0.67 4.99 16 10 O -0.57 -9.58 14.81 16.85 0.25 -9.33 16 11 N -0.71 0.28 5.03 -445.93 -2.24 -1.97 16 12 C 0.15 0.12 2.45 44.99 0.11 0.23 16 13 H 0.06 0.46 7.58 -2.39 -0.02 0.44 16 14 C -0.12 0.52 5.39 30.60 0.16 0.68 16 15 C -0.10 0.01 5.19 30.59 0.16 0.17 16 16 C 0.01 0.02 2.66 -11.54 -0.03 -0.01 16 17 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 18 C 0.23 1.71 6.65 138.63 0.92 2.63 16 19 N -0.34 -2.98 12.80 -51.34 -0.66 -3.63 16 20 N -0.48 -1.04 7.45 -50.71 -0.38 -1.41 16 21 C 0.28 0.53 8.24 138.23 1.14 1.67 16 22 C -0.08 0.59 10.51 71.24 0.75 1.34 16 23 N -0.57 -4.34 11.19 -179.73 -2.01 -6.35 16 24 C -0.10 -0.32 5.19 30.61 0.16 -0.16 16 25 C -0.12 -0.13 5.50 30.61 0.17 0.03 16 26 C 0.01 -0.02 8.14 22.50 0.18 0.17 16 27 C -0.20 -0.20 5.27 -19.80 -0.10 -0.31 16 28 C -0.06 -0.01 2.37 71.24 0.17 0.16 16 29 O -0.55 -0.58 12.88 -148.98 -1.92 -2.50 16 30 Si 0.78 -3.29 29.91 68.60 2.05 -1.24 16 31 H 0.07 -0.41 7.65 -2.39 -0.02 -0.43 16 32 H 0.07 -0.40 7.65 -2.39 -0.02 -0.42 16 33 H 0.12 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.16 -0.34 4.50 -2.91 -0.01 -0.36 16 35 H 0.11 -0.22 8.14 -2.38 -0.02 -0.24 16 36 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 37 H 0.07 -0.23 7.66 -2.39 -0.02 -0.25 16 38 H 0.41 -3.37 6.62 -92.71 -0.61 -3.98 16 39 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 40 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 41 H 0.06 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 43 H 0.45 -2.19 8.96 -213.10 -1.91 -4.10 16 44 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16 45 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 46 H 0.11 -1.36 8.14 -2.39 -0.02 -1.38 16 47 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.09 -0.31 8.14 -2.39 -0.02 -0.33 16 50 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 51 H 0.17 -1.59 3.44 -2.91 -0.01 -1.60 16 52 H 0.10 0.32 7.82 -2.39 -0.02 0.30 16 53 H 0.39 -3.07 8.70 -74.05 -0.64 -3.72 16 54 H -0.27 0.13 7.11 99.48 0.71 0.84 16 55 H -0.30 -1.05 7.11 99.48 0.71 -0.34 16 Total: 0.00 -34.91 440.98 -1.49 -36.40 By element: Atomic # 1 Polarization: -16.84 SS G_CDS: -2.16 Total: -19.00 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 7.04 Total: 14.36 kcal Atomic # 7 Polarization: -8.08 SS G_CDS: -5.29 Total: -13.36 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -3.14 Total: -17.16 kcal Atomic # 14 Polarization: -3.29 SS G_CDS: 2.05 Total: -1.24 kcal Total: -34.91 -1.49 -36.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608548_12297780.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.157 kcal (2) G-P(sol) polarization free energy of solvation -34.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds