Wall clock time and date at job start Sun Mar 7 2021 02:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37867 * 126.45908 * 2 1 4 4 C 1.46677 * 126.23074 * 359.97438 * 3 2 1 5 5 O 1.21693 * 120.00145 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99902 * 179.97438 * 4 3 2 7 7 C 1.46499 * 119.99847 * 179.97438 * 6 4 3 8 8 H 1.09000 * 109.47544 * 324.99811 * 7 6 4 9 9 C 1.52995 * 109.47085 * 85.00265 * 7 6 4 10 10 C 1.52998 * 109.47234 * 179.97438 * 9 7 6 11 11 C 1.52991 * 109.47217 * 300.00029 * 10 9 7 12 12 H 1.09003 * 109.47593 * 299.99644 * 11 10 9 13 13 C 1.50708 * 109.47227 * 179.97438 * 11 10 9 14 14 N 1.30713 * 125.52405 * 300.02831 * 13 11 10 15 15 N 1.40450 * 106.79085 * 179.97438 * 14 13 11 16 16 C 1.34432 * 106.35029 * 359.97438 * 15 14 13 17 17 C 1.50706 * 125.95558 * 179.97438 * 16 15 14 18 18 N 1.30823 * 108.07906 * 0.24732 * 16 15 14 19 19 C 1.53004 * 109.47260 * 59.99858 * 11 10 9 20 20 C 1.52990 * 109.47002 * 299.99984 * 19 11 10 21 21 N 1.37645 * 107.53378 * 180.25994 * 3 2 1 22 22 C 1.35534 * 108.64393 * 359.62754 * 21 3 2 23 23 C 1.50701 * 125.56496 * 180.18045 * 22 21 3 24 24 O 1.42905 * 109.46584 * 65.25161 * 23 22 21 25 25 Si 1.86297 * 109.47026 * 185.24935 * 23 22 21 26 26 C 1.35449 * 108.86895 * 0.37869 * 22 21 3 27 27 H 1.09005 * 109.47191 * 89.99835 * 1 2 3 28 28 H 1.08998 * 109.47307 * 210.00132 * 1 2 3 29 29 H 1.08998 * 109.47152 * 330.00218 * 1 2 3 30 30 H 0.97000 * 119.99415 * 0.02562 * 6 4 3 31 31 H 1.08999 * 109.47362 * 299.99788 * 9 7 6 32 32 H 1.09000 * 109.47300 * 59.99396 * 9 7 6 33 33 H 1.09000 * 109.47500 * 179.97438 * 10 9 7 34 34 H 1.08999 * 109.47044 * 60.00316 * 10 9 7 35 35 H 0.96998 * 126.82084 * 179.97438 * 15 14 13 36 36 H 1.08999 * 109.46995 * 90.02731 * 17 16 15 37 37 H 1.08994 * 109.46790 * 210.02418 * 17 16 15 38 38 H 1.08997 * 109.47305 * 330.02858 * 17 16 15 39 39 H 1.09000 * 109.47195 * 60.00154 * 19 11 10 40 40 H 1.09004 * 109.47164 * 179.97438 * 19 11 10 41 41 H 1.09001 * 109.47001 * 179.97438 * 20 19 11 42 42 H 1.09000 * 109.47284 * 300.00115 * 20 19 11 43 43 H 0.97002 * 125.67926 * 179.73437 * 21 3 2 44 44 H 1.08996 * 109.47179 * 305.25250 * 23 22 21 45 45 H 0.96691 * 114.00212 * 60.00737 * 24 23 22 46 46 H 1.48497 * 109.99937 * 58.68748 * 25 23 22 47 47 H 1.48508 * 109.99851 * 180.02562 * 25 23 22 48 48 H 1.08002 * 126.06434 * 179.74633 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1088 0.0000 4 6 1.8899 2.5092 -0.0005 5 8 0.7027 2.7765 -0.0015 6 7 2.8038 3.4999 0.0001 7 6 2.3679 4.8985 -0.0010 8 1 1.4567 4.9947 -0.5915 9 6 2.0945 5.3486 1.4354 10 6 1.6399 6.8095 1.4344 11 6 2.7373 7.6847 0.8258 12 1 3.6484 7.5882 1.4164 13 6 2.2892 9.1236 0.8242 14 7 1.2320 9.5892 0.2126 15 7 1.1887 10.9691 0.4706 16 6 2.2546 11.2433 1.2426 17 6 2.6335 12.6000 1.7784 18 7 2.9086 10.1281 1.4427 19 6 3.0107 7.2346 -0.6108 20 6 3.4653 5.7738 -0.6097 21 7 3.6283 0.6624 -0.0060 22 6 3.6217 -0.6929 -0.0012 23 6 4.8433 -1.5754 -0.0014 24 8 5.5628 -1.3928 1.2198 25 14 4.3220 -3.3574 -0.1545 26 6 2.3379 -1.1247 -0.0008 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.7500 3.2867 0.0005 31 1 1.3130 4.7248 1.8692 32 1 3.0057 5.2524 2.0259 33 1 1.4447 7.1301 2.4577 34 1 0.7288 6.9060 0.8439 35 1 0.5222 11.5990 0.1546 36 1 2.1611 12.7523 2.7487 37 1 3.7164 12.6576 1.8884 38 1 2.2972 13.3712 1.0854 39 1 2.0996 7.3311 -1.2014 40 1 3.7922 7.8585 -1.0445 41 1 3.6596 5.4530 -1.6331 42 1 4.3763 5.6772 -0.0191 43 1 4.4191 1.2243 -0.0110 44 1 5.4830 -1.3103 -0.8431 45 1 5.0538 -1.6104 2.0125 46 1 3.5454 -3.5537 -1.4049 47 1 5.5177 -4.2381 -0.1552 48 1 2.0136 -2.1549 -0.0014 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608548_13940406.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:41:28 Heat of formation + Delta-G solvation = 41.361030 kcal Electronic energy + Delta-G solvation = -29885.959135 eV Core-core repulsion = 25750.791471 eV Total energy + Delta-G solvation = -4135.167664 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.179 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.24940 -42.59597 -40.79813 -39.15937 -37.67105 -35.89996 -33.96377 -33.41119 -33.39581 -31.91114 -31.86865 -30.47360 -28.73669 -28.17605 -26.86069 -24.73766 -23.86914 -22.74837 -22.15288 -21.63901 -21.40056 -20.88152 -20.24410 -19.45426 -18.90316 -18.04412 -17.40316 -16.78868 -16.71051 -16.55486 -16.02410 -15.95321 -15.43726 -15.33509 -15.22713 -15.11249 -14.88366 -14.57511 -14.35494 -14.11948 -13.99897 -13.89094 -13.68503 -13.59132 -13.53365 -13.48116 -13.28888 -12.96624 -12.86375 -12.36911 -12.31688 -12.20675 -12.16727 -11.98368 -11.69581 -11.49840 -11.11731 -11.09474 -11.04622 -10.63785 -10.48805 -10.23107 -9.81079 -9.18863 -4.90631 0.31540 0.53617 1.24303 1.54018 1.67841 1.73353 1.76694 1.91674 2.00688 2.23623 2.26768 2.90778 3.46591 3.49025 3.58670 3.61252 3.66581 3.75444 3.84852 4.03647 4.13299 4.15408 4.17057 4.23533 4.33118 4.35307 4.41342 4.43889 4.59802 4.60474 4.65181 4.73130 4.77942 4.82432 4.90183 4.96879 4.98784 5.00199 5.05767 5.08341 5.16464 5.20272 5.22057 5.28069 5.33929 5.38968 5.45446 5.64747 5.86632 6.14360 6.32437 6.49685 6.69350 7.03780 7.09051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.087 4.087 3 C -0.070 4.070 4 C 0.587 3.413 5 O -0.562 6.562 6 N -0.714 5.714 7 C 0.149 3.851 8 H 0.068 0.932 9 C -0.118 4.118 10 C -0.097 4.097 11 C 0.010 3.990 12 H 0.107 0.893 13 C 0.225 3.775 14 N -0.341 5.341 15 N -0.480 5.480 16 C 0.285 3.715 17 C -0.077 4.077 18 N -0.574 5.574 19 C -0.098 4.098 20 C -0.114 4.114 21 N -0.513 5.513 22 C 0.033 3.967 23 C -0.053 4.053 24 O -0.554 6.554 25 Si 0.802 3.198 26 C -0.207 4.207 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.408 0.592 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.454 0.546 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.427 0.573 44 H 0.116 0.884 45 H 0.399 0.601 46 H -0.287 1.287 47 H -0.294 1.294 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 2.233 2.114 4.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.183 4.183 4 C 0.376 3.624 5 O -0.440 6.440 6 N -0.365 5.365 7 C 0.045 3.955 8 H 0.087 0.913 9 C -0.156 4.156 10 C -0.136 4.136 11 C -0.011 4.011 12 H 0.125 0.875 13 C -0.058 4.058 14 N -0.171 5.171 15 N -0.199 5.199 16 C 0.007 3.993 17 C -0.136 4.136 18 N -0.304 5.304 19 C -0.137 4.137 20 C -0.152 4.152 21 N -0.111 5.111 22 C -0.086 4.086 23 C -0.163 4.163 24 O -0.362 6.362 25 Si 0.706 3.294 26 C -0.231 4.231 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.079 0.921 30 H 0.245 0.755 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.302 0.698 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.267 0.733 44 H 0.134 0.866 45 H 0.249 0.751 46 H -0.214 1.214 47 H -0.221 1.221 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.248 1.576 1.012 3.750 hybrid contribution 0.210 1.514 -0.565 1.630 sum 3.458 3.091 0.447 4.660 Atomic orbital electron populations 1.20336 0.89265 1.03031 1.02123 1.20168 0.96274 0.91366 1.01760 1.20150 0.84520 0.93095 1.20538 1.17224 0.85652 0.83726 0.75779 1.90822 1.17616 1.83747 1.51853 1.45823 1.09677 1.05771 1.75224 1.20978 0.98587 0.79299 0.96663 0.91333 1.21808 1.02239 0.94943 0.96648 1.21390 0.97471 0.93917 1.00855 1.19672 0.99641 0.82999 0.98823 0.87457 1.24537 0.90049 0.97797 0.93385 1.77922 1.23030 0.89659 1.26466 1.48004 1.23964 1.07372 1.40591 1.25211 0.85037 0.98351 0.90660 1.20638 1.04993 0.85060 1.02873 1.70391 1.32904 0.98400 1.28719 1.21417 1.01985 0.95983 0.94362 1.21731 0.97988 0.92986 1.02445 1.41819 1.06786 1.06766 1.55687 1.21304 0.97075 0.83376 1.06860 1.25021 0.91603 1.09122 0.90559 1.86475 1.42617 1.91207 1.15856 0.92982 0.79593 0.71125 0.85717 1.20834 0.90781 0.99523 1.11939 0.91815 0.89878 0.92088 0.75545 0.92736 0.89762 0.91818 0.92460 0.69796 0.87500 0.88076 0.87193 0.92153 0.90762 0.89916 0.88784 0.73285 0.86618 0.75055 1.21394 1.22148 0.81414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 9.83 71.24 0.70 0.21 16 2 C -0.09 -0.45 6.21 -19.57 -0.12 -0.57 16 3 C -0.07 -0.30 7.06 40.35 0.28 -0.02 16 4 C 0.59 3.98 7.75 86.45 0.67 4.65 16 5 O -0.56 -8.21 14.46 -4.32 -0.06 -8.27 16 6 N -0.71 0.18 5.07 -446.50 -2.27 -2.09 16 7 C 0.15 0.13 2.45 44.99 0.11 0.24 16 8 H 0.07 0.45 7.58 -2.39 -0.02 0.44 16 9 C -0.12 -0.18 5.49 30.59 0.17 -0.02 16 10 C -0.10 -0.33 5.19 30.59 0.16 -0.17 16 11 C 0.01 0.03 2.66 -11.54 -0.03 0.00 16 12 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 13 C 0.23 1.75 6.65 138.63 0.92 2.67 16 14 N -0.34 -2.91 12.80 -51.33 -0.66 -3.57 16 15 N -0.48 -0.98 7.45 -50.70 -0.38 -1.35 16 16 C 0.29 0.55 8.24 138.23 1.14 1.69 16 17 C -0.08 0.59 10.51 71.24 0.75 1.34 16 18 N -0.57 -4.54 11.19 -179.72 -2.01 -6.55 16 19 C -0.10 -0.03 5.18 30.59 0.16 0.13 16 20 C -0.11 0.41 5.39 30.59 0.16 0.58 16 21 N -0.51 0.83 5.99 -171.94 -1.03 -0.20 16 22 C 0.03 -0.05 6.46 41.34 0.27 0.21 16 23 C -0.05 0.22 3.08 71.24 0.22 0.44 16 24 O -0.55 2.24 12.88 -148.98 -1.92 0.32 16 25 Si 0.80 -3.74 30.56 68.60 2.10 -1.64 16 26 C -0.21 -0.08 9.27 22.01 0.20 0.13 16 27 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.08 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.06 0.60 6.49 -2.39 -0.02 0.58 16 30 H 0.41 -2.70 7.73 -92.71 -0.72 -3.42 16 31 H 0.05 0.33 8.14 -2.39 -0.02 0.32 16 32 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.45 -2.29 8.96 -213.10 -1.91 -4.20 16 36 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 37 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H 0.11 -1.40 8.14 -2.39 -0.02 -1.42 16 39 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.07 0.01 8.14 -2.38 -0.02 -0.01 16 41 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 42 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.43 -2.94 8.19 -92.71 -0.76 -3.70 16 44 H 0.12 -0.50 7.96 -2.39 -0.02 -0.52 16 45 H 0.40 -4.42 8.70 -74.06 -0.64 -5.06 16 46 H -0.29 -0.35 7.11 99.48 0.71 0.35 16 47 H -0.29 -0.66 7.11 99.48 0.71 0.04 16 48 H 0.17 -0.72 6.19 -2.91 -0.02 -0.73 16 Total: 0.00 -27.51 391.81 -3.42 -30.93 By element: Atomic # 1 Polarization: -16.14 SS G_CDS: -2.96 Total: -19.10 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.76 Total: 11.51 kcal Atomic # 7 Polarization: -7.42 SS G_CDS: -6.34 Total: -13.76 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -1.98 Total: -7.95 kcal Atomic # 14 Polarization: -3.74 SS G_CDS: 2.10 Total: -1.64 kcal Total: -27.51 -3.42 -30.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608548_13940406.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.293 kcal (2) G-P(sol) polarization free energy of solvation -27.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds