Wall clock time and date at job start Sun Mar 7 2021 02:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30832 * 125.96276 * 2 1 4 4 C 1.33239 * 109.83415 * 180.12673 * 3 2 1 5 5 C 1.50696 * 125.53336 * 179.85441 * 4 3 2 6 6 H 1.08999 * 109.46750 * 359.71896 * 5 4 3 7 7 C 1.53001 * 109.47143 * 119.71588 * 5 4 3 8 8 C 1.53001 * 109.47319 * 180.02562 * 7 5 4 9 9 C 1.53001 * 109.46547 * 299.99653 * 8 7 5 10 10 H 1.08999 * 109.47617 * 300.00016 * 9 8 7 11 11 N 1.46507 * 109.47067 * 179.97438 * 9 8 7 12 12 C 1.34784 * 119.99490 * 85.00114 * 11 9 8 13 13 O 1.21276 * 120.00015 * 359.97438 * 12 11 9 14 14 C 1.50693 * 119.99707 * 180.02562 * 12 11 9 15 15 O 1.42899 * 109.47476 * 180.02562 * 14 12 11 16 16 C 1.35893 * 117.00251 * 180.02562 * 15 14 12 17 17 C 1.38713 * 120.05284 * 180.02562 * 16 15 14 18 18 N 1.48009 * 120.02915 * 359.96390 * 17 16 15 19 19 O 1.21799 * 119.99748 * 180.02562 * 18 17 16 20 20 O 1.21798 * 120.00001 * 0.02562 * 18 17 16 21 21 C 1.38164 * 119.94297 * 179.70472 * 17 16 15 22 22 C 1.38246 * 120.05751 * 0.54026 * 21 17 16 23 23 C 1.50699 * 119.94853 * 179.72724 * 22 21 17 24 24 O 1.42907 * 109.46603 * 64.72999 * 23 22 21 25 25 Si 1.86298 * 109.47032 * 184.72302 * 23 22 21 26 26 C 1.38292 * 120.10779 * 359.45590 * 22 21 17 27 27 C 1.38123 * 120.05644 * 0.26801 * 26 22 21 28 28 C 1.53001 * 109.47028 * 60.00168 * 9 8 7 29 29 C 1.52993 * 109.47514 * 239.71743 * 5 4 3 30 30 N 1.30719 * 108.94104 * 359.59052 * 4 3 2 31 31 N 1.34432 * 125.96385 * 179.67469 * 2 1 3 32 32 H 1.08996 * 109.47288 * 270.30438 * 1 2 3 33 33 H 1.09007 * 109.47122 * 30.30184 * 1 2 3 34 34 H 1.08997 * 109.47122 * 150.30155 * 1 2 3 35 35 H 1.09006 * 109.47327 * 300.00220 * 7 5 4 36 36 H 1.08996 * 109.47503 * 59.99881 * 7 5 4 37 37 H 1.08999 * 109.47473 * 180.02562 * 8 7 5 38 38 H 1.08996 * 109.47443 * 59.99216 * 8 7 5 39 39 H 0.96991 * 120.00000 * 265.00451 * 11 9 8 40 40 H 1.09001 * 109.47546 * 59.99647 * 14 12 11 41 41 H 1.09001 * 109.46985 * 300.00091 * 14 12 11 42 42 H 1.08001 * 119.97538 * 180.28735 * 21 17 16 43 43 H 1.08996 * 109.47117 * 304.72912 * 23 22 21 44 44 H 0.96697 * 114.00527 * 59.99993 * 24 23 22 45 45 H 1.48506 * 109.99834 * 58.68765 * 25 23 22 46 46 H 1.48502 * 110.00011 * 180.02562 * 25 23 22 47 47 H 1.07996 * 119.97442 * 180.25345 * 26 22 21 48 48 H 1.07992 * 120.02881 * 180.02562 * 27 26 22 49 49 H 1.08996 * 109.47503 * 60.00106 * 28 9 8 50 50 H 1.09007 * 109.47100 * 179.97438 * 28 9 8 51 51 H 1.08997 * 109.47350 * 59.99576 * 29 5 4 52 52 H 1.09009 * 109.46741 * 300.00041 * 29 5 4 53 53 H 0.97001 * 126.81526 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0028 5 6 4.7372 1.6236 -0.0068 6 1 4.3847 2.6550 -0.0121 7 6 5.5839 1.3805 1.2442 8 6 6.7837 2.3300 1.2405 9 6 7.6320 2.0748 -0.0070 10 1 7.9848 1.0435 -0.0018 11 7 8.7805 2.9844 -0.0110 12 6 9.9020 2.6565 0.6609 13 8 9.9602 1.6089 1.2690 14 6 11.0832 3.5923 0.6573 15 8 12.1416 3.0265 1.4329 16 6 13.2879 3.7494 1.5328 17 6 14.3561 3.2597 2.2699 18 7 14.2483 1.9492 2.9493 19 8 15.1864 1.5200 3.5968 20 8 13.2215 1.3001 2.8610 21 6 15.5227 3.9939 2.3649 22 6 15.6220 5.2207 1.7354 23 6 16.8934 6.0221 1.8457 24 8 17.9590 5.3150 1.2081 25 14 16.6602 7.6738 1.0160 26 6 14.5585 5.7111 0.9999 27 6 13.3921 4.9784 0.8971 28 6 6.7853 2.3179 -1.2580 29 6 5.5854 1.3681 -1.2542 30 7 3.6194 -0.6168 0.0043 31 7 2.2964 -1.0881 0.0062 32 1 -0.3633 0.0055 1.0276 33 1 -0.3634 0.8873 -0.5185 34 1 -0.3633 -0.8927 -0.5091 35 1 4.9797 1.5626 2.1330 36 1 5.9364 0.3491 1.2497 37 1 7.3871 2.1566 2.1314 38 1 6.4309 3.3613 1.2352 39 1 8.7338 3.8224 -0.4970 40 1 10.7893 4.5500 1.0868 41 1 11.4243 3.7429 -0.3670 42 1 16.3563 3.6109 2.9348 43 1 17.1365 6.1748 2.8972 44 1 17.8104 5.1437 0.2681 45 1 15.5340 8.4058 1.6492 46 1 17.9073 8.4736 1.1173 47 1 14.6399 6.6678 0.5056 48 1 12.5620 5.3616 0.3223 49 1 6.4325 3.3492 -1.2633 50 1 7.3898 2.1365 -2.1468 51 1 4.9822 1.5412 -2.1454 52 1 5.9379 0.3366 -1.2488 53 1 2.0092 -2.0146 0.0118 There are 77 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 77 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608548_4549638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:42:39 Heat of formation + Delta-G solvation = 1.283440 kcal Electronic energy + Delta-G solvation = -39237.529547 eV Core-core repulsion = 33888.125131 eV Total energy + Delta-G solvation = -5349.404415 eV No. of doubly occupied orbitals = 77 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 418.178 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -43.29248 -43.23067 -41.78563 -40.97932 -39.72598 -38.96471 -37.59581 -37.35680 -35.77611 -33.83365 -33.44474 -33.38260 -32.26366 -31.85138 -31.21132 -29.37495 -28.55640 -27.81273 -26.55868 -24.86998 -23.94334 -23.81136 -22.83372 -22.35840 -21.63256 -21.46784 -20.61645 -20.47073 -19.77221 -19.17722 -18.91452 -18.63731 -18.44270 -18.09033 -17.54712 -17.30376 -17.06180 -16.74687 -16.36370 -16.20203 -16.06366 -15.76843 -15.57086 -15.29629 -15.14484 -15.12685 -14.79330 -14.66602 -14.13461 -14.03551 -13.96442 -13.87447 -13.73219 -13.66864 -13.45317 -13.24065 -13.20524 -12.84824 -12.71137 -12.38750 -12.30005 -12.29380 -12.27183 -12.21300 -12.18634 -12.15276 -11.96414 -11.64304 -11.44965 -11.09894 -11.04803 -10.93834 -10.82291 -10.54873 -10.47081 -10.12053 -9.79028 -4.99684 -1.31343 -0.23434 0.15947 0.35816 0.55340 1.23096 1.28229 1.50534 1.66292 1.69516 1.78453 2.03707 2.05771 2.34331 2.93097 3.12834 3.26677 3.40474 3.49855 3.53862 3.63248 3.68234 3.72190 3.72428 3.79480 3.82058 3.95914 4.04637 4.09070 4.19355 4.22023 4.28928 4.36146 4.38225 4.39971 4.46788 4.52504 4.62692 4.64526 4.66087 4.66766 4.83338 4.85004 5.01862 5.02764 5.04346 5.08428 5.09755 5.14098 5.19671 5.23082 5.28018 5.35023 5.39674 5.50773 5.78095 6.15231 6.41247 6.51948 6.74788 7.05206 7.22453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.285 3.715 3 N -0.572 5.572 4 C 0.224 3.776 5 C 0.011 3.989 6 H 0.111 0.889 7 C -0.100 4.100 8 C -0.119 4.119 9 C 0.148 3.852 10 H 0.059 0.941 11 N -0.701 5.701 12 C 0.506 3.494 13 O -0.567 6.567 14 C 0.024 3.976 15 O -0.293 6.293 16 C 0.194 3.806 17 C -0.106 4.106 18 N 0.035 4.965 19 O -0.205 6.205 20 O -0.174 6.174 21 C -0.005 4.005 22 C -0.151 4.151 23 C -0.083 4.083 24 O -0.558 6.558 25 Si 0.801 3.199 26 C -0.002 4.002 27 C -0.188 4.188 28 C -0.110 4.110 29 C -0.101 4.101 30 N -0.344 5.344 31 N -0.481 5.481 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.424 0.576 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.108 0.892 44 H 0.398 0.602 45 H -0.266 1.266 46 H -0.306 1.306 47 H 0.192 0.808 48 H 0.209 0.791 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.075 0.925 52 H 0.055 0.945 53 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 11.777 -11.216 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.007 3.993 3 N -0.303 5.303 4 C -0.059 4.059 5 C -0.010 4.010 6 H 0.129 0.871 7 C -0.139 4.139 8 C -0.158 4.158 9 C 0.043 3.957 10 H 0.078 0.922 11 N -0.356 5.356 12 C 0.292 3.708 13 O -0.444 6.444 14 C -0.052 4.052 15 O -0.203 6.203 16 C 0.144 3.856 17 C -0.191 4.191 18 N 0.544 4.456 19 O -0.412 6.412 20 O -0.388 6.388 21 C -0.024 4.024 22 C -0.153 4.153 23 C -0.191 4.191 24 O -0.366 6.366 25 Si 0.704 3.296 26 C -0.019 4.019 27 C -0.206 4.206 28 C -0.148 4.148 29 C -0.140 4.140 30 N -0.173 5.173 31 N -0.200 5.200 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.111 0.889 39 H 0.263 0.737 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.166 0.834 43 H 0.125 0.875 44 H 0.248 0.752 45 H -0.192 1.192 46 H -0.234 1.234 47 H 0.208 0.792 48 H 0.226 0.774 49 H 0.120 0.880 50 H 0.106 0.894 51 H 0.094 0.906 52 H 0.074 0.926 53 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -6.303 12.236 -10.303 17.193 hybrid contribution -0.182 -2.034 1.327 2.435 sum -6.485 10.202 -8.977 15.057 Atomic orbital electron populations 1.20637 0.80480 1.06547 1.05923 1.25212 0.98182 0.82248 0.93626 1.70393 1.01750 1.30960 1.27176 1.24622 0.93813 0.90359 0.97065 1.19689 0.87941 0.96819 0.96578 0.87061 1.21407 0.96047 0.99766 0.96698 1.21826 0.95449 1.00777 0.97729 1.20935 0.85131 0.93770 0.95843 0.92243 1.45654 1.12618 1.24634 1.52706 1.20557 0.84569 0.86757 0.78914 1.90857 1.82858 1.26984 1.43737 1.23153 0.84747 0.97476 0.99858 1.86474 1.21300 1.44974 1.67522 1.18986 0.84276 0.91332 0.90960 1.20881 0.99787 0.87737 1.10734 1.43919 0.99670 1.03084 0.98895 1.94500 1.31391 1.74468 1.40844 1.94682 1.18870 1.58418 1.66850 1.20844 0.93675 0.92999 0.94858 1.20462 0.98925 0.94748 1.01136 1.25487 0.84856 1.05637 1.03102 1.86535 1.41678 1.78842 1.29569 0.93857 0.77684 0.70813 0.87253 1.21724 0.89831 0.99398 0.90986 1.21841 1.02790 0.91730 1.04241 1.21725 0.95232 1.01494 0.96330 1.21451 0.96128 1.00077 0.96362 1.77933 0.98335 1.12983 1.28092 1.48011 1.03622 1.11029 1.57367 0.87597 0.87954 0.87224 0.92150 0.93061 0.93368 0.88914 0.73680 0.83801 0.83478 0.83417 0.87492 0.75162 1.19199 1.23404 0.79182 0.77433 0.88008 0.89381 0.90592 0.92635 0.69864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.61 10.51 71.23 0.75 1.36 16 2 C 0.29 0.50 8.24 138.22 1.14 1.63 16 3 N -0.57 -4.23 11.19 -179.73 -2.01 -6.24 16 4 C 0.22 1.65 6.65 138.63 0.92 2.57 16 5 C 0.01 0.02 2.66 -11.54 -0.03 -0.01 16 6 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 7 C -0.10 -0.31 5.19 30.60 0.16 -0.15 16 8 C -0.12 0.01 5.50 30.60 0.17 0.18 16 9 C 0.15 -0.29 2.45 44.99 0.11 -0.18 16 10 H 0.06 0.34 7.58 -2.39 -0.02 0.32 16 11 N -0.70 4.67 5.08 -442.52 -2.25 2.43 16 12 C 0.51 0.52 7.87 87.65 0.69 1.20 16 13 O -0.57 -8.82 16.16 16.02 0.26 -8.56 16 14 C 0.02 -0.19 5.22 71.23 0.37 0.18 16 15 O -0.29 -1.32 7.68 -63.32 -0.49 -1.81 16 16 C 0.19 0.10 6.67 22.51 0.15 0.25 16 17 C -0.11 -0.79 6.87 36.47 0.25 -0.54 16 18 N 0.03 0.61 4.45 -46.24 -0.21 0.40 16 19 O -0.21 -4.02 18.45 18.89 0.35 -3.67 16 20 O -0.17 -3.94 17.24 25.61 0.44 -3.50 16 21 C 0.00 -0.01 9.18 22.25 0.20 0.19 16 22 C -0.15 0.85 5.35 -19.85 -0.11 0.74 16 23 C -0.08 0.49 2.80 71.24 0.20 0.69 16 24 O -0.56 1.93 12.83 -148.98 -1.91 0.02 16 25 Si 0.80 -8.19 29.80 68.60 2.04 -6.15 16 26 C 0.00 0.03 8.66 22.26 0.19 0.22 16 27 C -0.19 2.14 9.04 22.37 0.20 2.34 16 28 C -0.11 0.78 5.39 30.61 0.16 0.95 16 29 C -0.10 0.14 5.19 30.60 0.16 0.30 16 30 N -0.34 -2.99 12.80 -51.34 -0.66 -3.64 16 31 N -0.48 -1.05 7.45 -50.71 -0.38 -1.43 16 32 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H 0.10 -0.81 8.14 -2.38 -0.02 -0.83 16 34 H 0.11 -1.41 8.14 -2.39 -0.02 -1.43 16 35 H 0.06 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 39 H 0.42 -6.87 8.60 -92.71 -0.80 -7.67 16 40 H 0.14 -2.38 7.66 -2.39 -0.02 -2.40 16 41 H 0.15 -2.52 7.66 -2.39 -0.02 -2.54 16 42 H 0.15 0.67 7.61 -2.91 -0.02 0.65 16 43 H 0.11 -0.40 7.96 -2.39 -0.02 -0.42 16 44 H 0.40 -4.95 8.70 -74.06 -0.64 -5.59 16 45 H -0.27 2.07 7.11 99.48 0.71 2.77 16 46 H -0.31 0.12 7.11 99.48 0.71 0.83 16 47 H 0.19 -3.90 4.90 -2.91 -0.01 -3.91 16 48 H 0.21 -4.54 6.30 -2.91 -0.02 -4.56 16 49 H 0.10 -1.22 8.14 -2.39 -0.02 -1.24 16 50 H 0.09 -0.77 8.14 -2.38 -0.02 -0.79 16 51 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 52 H 0.05 0.16 8.14 -2.38 -0.02 0.14 16 53 H 0.45 -2.14 8.96 -213.10 -1.91 -4.05 16 Total: 0.00 -50.46 444.41 -1.41 -51.86 By element: Atomic # 1 Polarization: -29.35 SS G_CDS: -2.30 Total: -31.65 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 5.69 Total: 11.94 kcal Atomic # 7 Polarization: -2.98 SS G_CDS: -5.50 Total: -8.48 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -1.35 Total: -17.53 kcal Atomic # 14 Polarization: -8.19 SS G_CDS: 2.04 Total: -6.15 kcal Total: -50.46 -1.41 -51.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608548_4549638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.148 kcal (2) G-P(sol) polarization free energy of solvation -50.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds