Wall clock time and date at job start Sun Mar 7 2021 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30834 * 125.96319 * 2 1 4 4 C 1.33237 * 109.83095 * 180.12205 * 3 2 1 5 5 C 1.50702 * 125.52960 * 179.85304 * 4 3 2 6 6 H 1.09000 * 109.46834 * 359.71488 * 5 4 3 7 7 C 1.52999 * 109.47015 * 119.71724 * 5 4 3 8 8 C 1.53007 * 109.46800 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47115 * 300.00119 * 8 7 5 10 10 H 1.09009 * 109.47393 * 299.99785 * 9 8 7 11 11 N 1.46505 * 109.47259 * 180.02562 * 9 8 7 12 12 C 1.34775 * 120.00314 * 154.99570 * 11 9 8 13 13 O 1.21707 * 119.99614 * 0.02562 * 12 11 9 14 14 C 1.46576 * 119.99951 * 180.02562 * 12 11 9 15 15 C 1.36650 * 125.45809 * 179.97438 * 14 12 11 16 16 C 1.37474 * 113.29859 * 180.02562 * 15 14 12 17 17 C 1.50699 * 122.44931 * 179.97438 * 16 15 14 18 18 C 1.33816 * 115.09906 * 359.97438 * 16 15 14 19 19 C 1.50695 * 124.52118 * 180.02562 * 18 16 15 20 20 O 1.42892 * 109.47325 * 246.71047 * 19 18 16 21 21 Si 1.86303 * 109.47433 * 126.70794 * 19 18 16 22 22 S 1.70614 * 110.95479 * 359.97438 * 18 16 15 23 23 C 1.52994 * 109.47525 * 59.99723 * 9 8 7 24 24 C 1.52998 * 109.47523 * 300.00097 * 23 9 8 25 25 N 1.30716 * 108.94543 * 359.59039 * 4 3 2 26 26 N 1.34435 * 125.96080 * 179.66844 * 2 1 3 27 27 H 1.09001 * 109.47619 * 270.30995 * 1 2 3 28 28 H 1.09005 * 109.46925 * 30.30713 * 1 2 3 29 29 H 1.08998 * 109.47147 * 150.30656 * 1 2 3 30 30 H 1.08993 * 109.47156 * 60.00336 * 7 5 4 31 31 H 1.08998 * 109.47290 * 299.99779 * 7 5 4 32 32 H 1.09002 * 109.47012 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47089 * 59.99739 * 8 7 5 34 34 H 0.96997 * 119.99238 * 334.99979 * 11 9 8 35 35 H 1.08003 * 123.34833 * 0.03045 * 15 14 12 36 36 H 1.09001 * 109.47284 * 95.14726 * 17 16 15 37 37 H 1.08997 * 109.47290 * 215.15267 * 17 16 15 38 38 H 1.09002 * 109.47445 * 335.14827 * 17 16 15 39 39 H 1.09006 * 109.47456 * 6.71242 * 19 18 16 40 40 H 0.96706 * 113.99883 * 299.99692 * 20 19 18 41 41 H 1.48496 * 110.00314 * 179.97438 * 21 19 18 42 42 H 1.48504 * 109.99827 * 301.32261 * 21 19 18 43 43 H 1.09007 * 109.46646 * 60.00193 * 23 9 8 44 44 H 1.09004 * 109.47432 * 179.97438 * 23 9 8 45 45 H 1.09000 * 109.47032 * 300.00067 * 24 23 9 46 46 H 1.08998 * 109.47131 * 179.97438 * 24 23 9 47 47 H 0.97001 * 126.82486 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 -0.0027 5 6 4.7372 1.6236 -0.0067 6 1 4.3847 2.6550 -0.0122 7 6 5.5838 1.3805 1.2443 8 6 6.7836 2.3301 1.2405 9 6 7.6319 2.0750 -0.0069 10 1 7.9848 1.0437 -0.0017 11 7 8.7810 2.9838 -0.0102 12 6 9.9032 2.6489 -0.6773 13 8 9.9617 1.5916 -1.2772 14 6 11.0530 3.5579 -0.6801 15 6 12.2411 3.3313 -1.3161 16 6 13.1482 4.3514 -1.1532 17 6 14.5244 4.3152 -1.7662 18 6 12.7198 5.3788 -0.4105 19 6 13.5371 6.6055 -0.0973 20 8 13.8287 6.6393 1.3012 21 14 12.5749 8.1297 -0.5680 22 16 11.1243 5.1150 0.1333 23 6 6.7853 2.3179 -1.2579 24 6 5.5856 1.3684 -1.2542 25 7 3.6193 -0.6168 0.0044 26 7 2.2964 -1.0881 0.0063 27 1 -0.3634 0.0056 1.0276 28 1 -0.3633 0.8873 -0.5186 29 1 -0.3633 -0.8927 -0.5090 30 1 5.9363 0.3492 1.2498 31 1 4.9796 1.5627 2.1330 32 1 7.3865 2.1573 2.1320 33 1 6.4307 3.3614 1.2352 34 1 8.7341 3.8266 0.4677 35 1 12.4469 2.4397 -1.8897 36 1 14.5122 4.8457 -2.7183 37 1 15.2350 4.7940 -1.0925 38 1 14.8216 3.2795 -1.9313 39 1 14.4689 6.5753 -0.6621 40 1 13.0442 6.6673 1.8660 41 1 13.3698 9.3465 -0.2635 42 1 12.2379 8.0912 -2.0138 43 1 6.4324 3.3493 -1.2631 44 1 7.3898 2.1366 -2.1466 45 1 5.9385 0.3372 -1.2489 46 1 4.9823 1.5418 -2.1452 47 1 2.0093 -2.0147 0.0120 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608548_6739946.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 02:43:42 Heat of formation + Delta-G solvation = 30.986769 kcal Electronic energy + Delta-G solvation = -29356.113297 eV Core-core repulsion = 25246.847789 eV Total energy + Delta-G solvation = -4109.265508 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 363.140 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.21633 -41.23636 -39.93678 -39.12068 -37.56478 -35.81112 -33.83469 -33.36754 -32.54590 -31.85897 -30.63476 -29.86674 -28.71838 -26.83099 -24.92205 -23.94978 -23.80347 -22.35259 -21.75913 -21.48365 -20.65072 -20.17277 -19.34081 -18.86599 -17.87444 -17.67349 -16.99889 -16.73867 -16.53823 -16.18824 -15.92431 -15.69968 -15.40362 -15.21158 -15.17000 -14.89000 -14.71431 -14.38286 -14.24121 -14.04950 -13.98543 -13.68351 -13.48370 -13.46718 -13.24853 -13.17930 -13.01439 -12.83719 -12.48507 -12.32504 -12.29253 -12.21923 -12.15219 -11.94782 -11.65479 -11.45943 -11.21680 -11.08495 -11.02802 -10.77383 -10.45770 -10.23315 -9.69609 -9.41111 -5.17040 -0.69119 0.31806 0.56648 0.69656 1.06270 1.26037 1.60507 1.70696 1.79967 1.88929 1.96665 2.06323 2.94143 3.36326 3.50237 3.56244 3.63376 3.69276 3.73713 3.83191 4.05627 4.07925 4.17114 4.18963 4.21100 4.37225 4.38896 4.39918 4.44241 4.46858 4.63219 4.64836 4.67548 4.68858 4.78109 4.83276 4.93542 5.01787 5.03228 5.04602 5.09842 5.13889 5.23213 5.24221 5.27288 5.32313 5.34716 5.38623 5.48954 6.16775 6.37127 6.60526 7.04349 7.06868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.285 3.715 3 N -0.573 5.573 4 C 0.226 3.774 5 C 0.009 3.991 6 H 0.110 0.890 7 C -0.099 4.099 8 C -0.114 4.114 9 C 0.146 3.854 10 H 0.068 0.932 11 N -0.707 5.707 12 C 0.590 3.410 13 O -0.571 6.571 14 C -0.285 4.285 15 C -0.061 4.061 16 C -0.114 4.114 17 C -0.102 4.102 18 C -0.242 4.242 19 C -0.039 4.039 20 O -0.546 6.546 21 Si 0.762 3.238 22 S 0.286 5.714 23 C -0.120 4.120 24 C -0.097 4.097 25 N -0.343 5.343 26 N -0.480 5.480 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.413 0.587 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.394 0.606 41 H -0.276 1.276 42 H -0.284 1.284 43 H 0.089 0.911 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.063 0.937 47 H 0.453 0.547 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.378 3.606 3.982 8.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.007 3.993 3 N -0.303 5.303 4 C -0.057 4.057 5 C -0.012 4.012 6 H 0.128 0.872 7 C -0.138 4.138 8 C -0.152 4.152 9 C 0.042 3.958 10 H 0.086 0.914 11 N -0.358 5.358 12 C 0.377 3.623 13 O -0.452 6.452 14 C -0.406 4.406 15 C -0.095 4.095 16 C -0.127 4.127 17 C -0.161 4.161 18 C -0.362 4.362 19 C -0.150 4.150 20 O -0.354 6.354 21 Si 0.664 3.336 22 S 0.556 5.444 23 C -0.159 4.159 24 C -0.137 4.137 25 N -0.172 5.172 26 N -0.200 5.200 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.250 0.750 35 H 0.162 0.838 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.142 0.858 40 H 0.244 0.756 41 H -0.202 1.202 42 H -0.210 1.210 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.301 0.699 Dipole moment (debyes) X Y Z Total from point charges -6.266 4.363 3.790 8.524 hybrid contribution 1.307 -2.088 -1.308 2.789 sum -4.959 2.276 2.482 5.994 Atomic orbital electron populations 1.20633 0.80508 1.06427 1.06000 1.25206 0.98177 0.82257 0.93660 1.70396 1.01781 1.30983 1.27144 1.24566 0.93731 0.90335 0.97086 1.19694 0.88023 0.96859 0.96613 0.87175 1.21424 0.95856 1.00039 0.96449 1.21755 0.95487 1.01587 0.96381 1.21044 0.84795 0.93736 0.96190 0.91401 1.45797 1.13314 1.23810 1.52876 1.17163 0.82034 0.84678 0.78390 1.90838 1.83162 1.25671 1.45570 1.24577 0.99938 1.03116 1.12920 1.20729 0.91186 0.99687 0.97868 1.18794 0.99029 0.93288 1.01576 1.20640 0.90996 1.03743 1.00720 1.24731 1.02053 1.02639 1.06805 1.24782 1.03175 1.00425 0.86637 1.86549 1.37549 1.96803 1.14495 0.94228 0.83910 0.73980 0.81477 1.82168 1.05868 1.09513 1.46899 1.21834 0.95605 1.00874 0.97543 1.21393 0.95775 0.99751 0.96746 1.77924 0.98297 1.12895 1.28070 1.48008 1.03619 1.11006 1.57361 0.87382 0.88127 0.87326 0.92291 0.90541 0.89508 0.88277 0.74978 0.83821 0.90338 0.90696 0.90726 0.85816 0.75574 1.20186 1.20976 0.89237 0.92967 0.92637 0.91854 0.69850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.62 10.51 71.23 0.75 1.37 16 2 C 0.28 0.44 8.24 138.22 1.14 1.58 16 3 N -0.57 -4.20 11.19 -179.73 -2.01 -6.21 16 4 C 0.23 1.62 6.65 138.63 0.92 2.54 16 5 C 0.01 0.02 2.66 -11.54 -0.03 -0.01 16 6 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 7 C -0.10 0.07 5.19 30.60 0.16 0.23 16 8 C -0.11 0.55 5.39 30.59 0.16 0.71 16 9 C 0.15 0.06 2.45 44.99 0.11 0.17 16 10 H 0.07 0.42 7.58 -2.38 -0.02 0.41 16 11 N -0.71 0.35 5.07 -446.59 -2.27 -1.92 16 12 C 0.59 3.96 7.75 86.42 0.67 4.63 16 13 O -0.57 -8.99 16.50 -4.37 -0.07 -9.06 16 14 C -0.29 -0.99 6.45 24.07 0.16 -0.83 16 15 C -0.06 -0.31 9.78 21.72 0.21 -0.10 16 16 C -0.11 -0.27 5.78 -21.05 -0.12 -0.40 16 17 C -0.10 0.02 9.48 71.24 0.67 0.70 16 18 C -0.24 0.17 4.83 24.68 0.12 0.29 16 19 C -0.04 0.08 2.77 71.23 0.20 0.28 16 20 O -0.55 1.06 12.88 -148.98 -1.92 -0.86 16 21 Si 0.76 -2.77 32.13 68.60 2.20 -0.56 16 22 S 0.29 -1.34 20.82 -56.49 -1.18 -2.51 16 23 C -0.12 -0.13 5.50 30.59 0.17 0.04 16 24 C -0.10 -0.29 5.19 30.60 0.16 -0.13 16 25 N -0.34 -2.79 12.80 -51.33 -0.66 -3.45 16 26 N -0.48 -0.84 7.45 -50.71 -0.38 -1.22 16 27 H 0.11 -1.13 8.14 -2.39 -0.02 -1.15 16 28 H 0.10 -0.77 8.14 -2.38 -0.02 -0.79 16 29 H 0.11 -1.39 8.14 -2.39 -0.02 -1.41 16 30 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.08 -0.08 8.14 -2.39 -0.02 -0.10 16 32 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 34 H 0.41 -2.90 7.72 -92.71 -0.72 -3.62 16 35 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 36 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.07 -0.07 7.00 -2.39 -0.02 -0.09 16 38 H 0.07 -0.05 8.10 -2.39 -0.02 -0.07 16 39 H 0.12 -0.19 6.25 -2.38 -0.01 -0.21 16 40 H 0.39 -4.07 8.70 -74.05 -0.64 -4.71 16 41 H -0.28 -0.65 7.11 99.48 0.71 0.05 16 42 H -0.28 -0.69 7.11 99.48 0.71 0.01 16 43 H 0.09 -0.25 8.14 -2.38 -0.02 -0.27 16 44 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 45 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.45 -2.37 8.96 -213.10 -1.91 -4.28 16 Total: 0.00 -27.65 399.86 -3.03 -30.68 By element: Atomic # 1 Polarization: -13.76 SS G_CDS: -2.20 Total: -15.96 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 5.45 Total: 11.07 kcal Atomic # 7 Polarization: -7.48 SS G_CDS: -5.31 Total: -12.79 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: -1.99 Total: -9.92 kcal Atomic # 14 Polarization: -2.77 SS G_CDS: 2.20 Total: -0.56 kcal Atomic # 16 Polarization: -1.34 SS G_CDS: -1.18 Total: -2.51 kcal Total: -27.65 -3.03 -30.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608548_6739946.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.668 kcal (2) G-P(sol) polarization free energy of solvation -27.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds