Wall clock time and date at job start Sun Mar 7 2021 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35998 * 117.00034 * 2 1 4 4 C 1.39151 * 120.07176 * 179.97438 * 3 2 1 5 5 O 1.35993 * 120.07506 * 0.02562 * 4 3 2 6 6 C 1.42898 * 117.00207 * 179.71972 * 5 4 3 7 7 C 1.50696 * 109.47213 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00096 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99801 * 180.02562 * 7 6 5 10 10 C 1.47218 * 136.18384 * 359.97283 * 9 7 6 11 11 C 1.53636 * 88.20699 * 153.59844 * 10 9 7 12 12 C 1.46288 * 136.18059 * 179.97438 * 9 7 6 13 13 C 1.53076 * 120.98466 * 332.52919 * 12 9 7 14 14 C 1.53920 * 86.84284 * 100.33633 * 13 12 9 15 15 C 1.50700 * 113.58426 * 139.46090 * 14 13 12 16 16 N 1.30502 * 125.64838 * 95.02803 * 15 14 13 17 17 C 1.34133 * 109.25445 * 179.97438 * 16 15 14 18 18 C 1.34671 * 108.02144 * 0.02562 * 17 16 15 19 19 N 1.35045 * 125.65122 * 274.71604 * 15 14 13 20 20 C 1.53067 * 120.98635 * 80.56763 * 12 9 7 21 21 C 1.38565 * 119.85010 * 179.72378 * 4 3 2 22 22 C 1.38247 * 120.00194 * 0.28640 * 21 4 3 23 23 N 1.48005 * 119.92625 * 179.97438 * 22 21 4 24 24 O 1.21802 * 120.00087 * 359.97438 * 23 22 21 25 25 O 1.21794 * 119.99775 * 179.97438 * 23 22 21 26 26 C 1.38248 * 120.14305 * 0.02562 * 22 21 4 27 27 C 1.50700 * 119.92464 * 179.97438 * 26 22 21 28 28 O 1.42896 * 109.47261 * 74.99974 * 27 26 22 29 29 Si 1.86298 * 109.47251 * 194.99978 * 27 26 22 30 30 C 1.38248 * 120.15200 * 359.97438 * 26 22 21 31 31 H 1.08995 * 109.47187 * 59.99463 * 1 2 3 32 32 H 1.09006 * 109.47087 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46787 * 299.99832 * 1 2 3 34 34 H 1.09008 * 109.46840 * 59.99561 * 6 5 4 35 35 H 1.09001 * 109.47227 * 300.00064 * 6 5 4 36 36 H 1.09001 * 113.43743 * 268.43772 * 10 9 7 37 37 H 1.09001 * 113.43415 * 38.76266 * 10 9 7 38 38 H 1.08997 * 114.27277 * 271.83181 * 11 10 9 39 39 H 1.08997 * 114.27693 * 138.94494 * 11 10 9 40 40 H 1.08997 * 113.65491 * 214.82570 * 13 12 9 41 41 H 1.08997 * 113.65110 * 345.85281 * 13 12 9 42 42 H 1.09002 * 113.58784 * 270.27945 * 14 13 12 43 43 H 1.07997 * 125.98664 * 179.97438 * 17 16 15 44 44 H 1.07995 * 126.59289 * 180.02562 * 18 17 16 45 45 H 0.97001 * 126.39249 * 0.02562 * 19 15 14 46 46 H 1.09003 * 113.65333 * 14.14820 * 20 12 9 47 47 H 1.09002 * 113.65468 * 145.08792 * 20 12 9 48 48 H 1.07997 * 119.99717 * 180.25841 * 21 4 3 49 49 H 1.09004 * 109.46829 * 314.99970 * 27 26 22 50 50 H 0.96703 * 113.99955 * 180.02562 * 28 27 26 51 51 H 1.48496 * 110.00325 * 300.00108 * 29 27 26 52 52 H 1.48498 * 109.99982 * 61.31843 * 29 27 26 53 53 H 1.07993 * 120.00277 * 180.02562 * 30 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1796 0.1477 0.0005 6 6 5.6003 0.3006 -0.0051 7 6 6.2518 -1.0582 -0.0036 8 8 5.5670 -2.0591 0.0013 9 7 7.5957 -1.1612 -0.0077 10 6 8.7327 -0.2261 -0.0144 11 6 9.5715 -1.3168 0.6691 12 6 8.5707 -2.2517 -0.0075 13 6 8.2299 -3.6134 0.6032 14 6 7.9757 -4.0995 -0.8349 15 6 8.4930 -5.4895 -1.1018 16 7 7.7946 -6.5891 -1.0235 17 6 8.5787 -7.6339 -1.3280 18 6 9.8100 -7.1639 -1.6050 19 7 9.7547 -5.8031 -1.4674 20 6 8.9313 -2.9866 -1.3009 21 6 4.0603 2.5233 -0.0053 22 6 3.3029 3.6799 -0.0056 23 7 3.9715 5.0003 -0.0112 24 8 5.1877 5.0671 -0.0151 25 8 3.3055 6.0200 -0.0120 26 6 1.9224 3.6057 0.0004 27 6 1.1016 4.8696 0.0006 28 8 1.1292 5.4557 -1.3023 29 14 -0.6575 4.4676 0.4637 30 6 1.2932 2.3748 0.0062 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8901 34 1 5.9098 0.8527 0.8824 35 1 5.9033 0.8482 -0.8976 36 1 9.0815 0.0251 -1.0161 37 1 8.5742 0.6536 0.6095 38 1 9.5135 -1.3105 1.7575 39 1 10.5903 -1.4014 0.2911 40 1 9.0771 -4.1004 1.0862 41 1 7.3351 -3.6019 1.2255 42 1 6.9472 -3.9588 -1.1674 43 1 8.2759 -8.6704 -1.3468 44 1 10.6737 -7.7479 -1.8867 45 1 10.4858 -5.1805 -1.6043 46 1 8.5980 -2.4734 -2.2030 47 1 9.9750 -3.2971 -1.3511 48 1 5.1385 2.5840 -0.0091 49 1 1.5163 5.5719 0.7238 50 1 0.6207 6.2749 -1.3759 51 1 -1.2343 3.5108 -0.5146 52 1 -0.7031 3.8867 1.8296 53 1 0.2146 2.3196 0.0105 There are 79 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 79 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15706034_4549636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:14:50 Heat of formation + Delta-G solvation = 45.166010 kcal Electronic energy + Delta-G solvation = -42523.094081 eV Core-core repulsion = 36949.647754 eV Total energy + Delta-G solvation = -5573.446327 eV No. of doubly occupied orbitals = 79 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 431.166 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -43.48657 -43.24600 -42.34061 -42.05516 -40.43469 -39.38575 -38.97192 -37.81356 -37.15108 -37.02393 -33.52967 -32.91245 -32.77823 -31.73573 -30.40626 -29.41426 -28.84438 -27.99286 -27.10843 -26.08136 -25.83013 -24.19683 -23.48562 -23.26251 -22.73530 -22.12049 -21.26039 -20.85961 -19.97236 -19.64669 -19.18419 -19.02458 -18.91691 -18.34230 -18.25532 -18.09250 -17.93835 -17.51344 -17.14477 -17.06519 -16.60961 -16.50018 -16.32529 -15.96500 -15.76582 -15.45528 -15.34151 -15.02943 -14.88067 -14.74855 -14.52280 -14.40854 -14.17905 -14.10773 -13.96963 -13.70887 -13.60262 -13.39612 -13.08589 -13.03486 -12.74769 -12.71427 -12.58279 -12.51837 -12.45843 -12.42599 -12.34018 -12.23392 -11.93900 -11.88077 -11.22561 -11.08193 -11.07246 -10.99773 -10.66628 -10.25626 -9.89321 -9.65774 -9.39678 -5.02673 -1.42332 -0.60961 0.08680 0.20136 0.95152 1.03173 1.13259 1.28110 1.55522 1.67172 1.74031 1.79105 1.98012 2.06844 2.15389 2.78775 2.92887 3.05545 3.14971 3.23254 3.25101 3.29793 3.42756 3.45946 3.67626 3.70223 3.70584 3.74133 3.82318 3.86484 3.88817 3.95940 4.03701 4.07020 4.13797 4.19292 4.21106 4.38237 4.43962 4.46840 4.49738 4.52244 4.54441 4.56900 4.59547 4.66312 4.75250 4.83645 4.86676 4.96955 5.04916 5.19093 5.21448 5.24752 5.42230 5.73251 5.86344 6.46966 6.48945 6.50836 6.83078 6.87090 7.10852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.306 6.306 3 C 0.162 3.838 4 C 0.102 3.898 5 O -0.292 6.292 6 C 0.036 3.964 7 C 0.537 3.463 8 O -0.562 6.562 9 N -0.630 5.630 10 C 0.094 3.906 11 C -0.120 4.120 12 C 0.138 3.862 13 C -0.123 4.123 14 C -0.028 4.028 15 C 0.210 3.790 16 N -0.544 5.544 17 C -0.069 4.069 18 C -0.034 4.034 19 N -0.549 5.549 20 C -0.112 4.112 21 C -0.106 4.106 22 C -0.042 4.042 23 N 0.037 4.963 24 O -0.190 6.190 25 O -0.138 6.138 26 C -0.004 4.004 27 C -0.099 4.099 28 O -0.553 6.553 29 Si 0.778 3.222 30 C -0.187 4.187 31 H 0.073 0.927 32 H 0.130 0.870 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.050 0.950 42 H 0.080 0.920 43 H 0.176 0.824 44 H 0.218 0.782 45 H 0.435 0.565 46 H 0.085 0.915 47 H 0.131 0.869 48 H 0.190 0.810 49 H 0.102 0.898 50 H 0.409 0.591 51 H -0.269 1.269 52 H -0.277 1.277 53 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.389 5.080 0.315 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.218 6.218 3 C 0.114 3.886 4 C 0.054 3.946 5 O -0.205 6.205 6 C -0.041 4.041 7 C 0.326 3.674 8 O -0.439 6.439 9 N -0.365 5.365 10 C -0.026 4.026 11 C -0.157 4.157 12 C 0.053 3.947 13 C -0.162 4.162 14 C -0.049 4.049 15 C -0.055 4.055 16 N -0.264 5.264 17 C -0.216 4.216 18 C -0.168 4.168 19 N -0.155 5.155 20 C -0.151 4.151 21 C -0.125 4.125 22 C -0.126 4.126 23 N 0.553 4.447 24 O -0.398 6.398 25 O -0.359 6.359 26 C -0.005 4.005 27 C -0.208 4.208 28 O -0.363 6.363 29 Si 0.680 3.320 30 C -0.205 4.205 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.147 0.853 40 H 0.130 0.870 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.193 0.807 44 H 0.234 0.766 45 H 0.277 0.723 46 H 0.103 0.897 47 H 0.149 0.851 48 H 0.207 0.793 49 H 0.120 0.880 50 H 0.261 0.739 51 H -0.196 1.196 52 H -0.204 1.204 53 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.492 2.297 0.626 4.226 hybrid contribution 1.142 0.118 -0.369 1.206 sum 4.634 2.415 0.257 5.232 Atomic orbital electron populations 1.23673 0.75267 1.07080 1.02921 1.86320 1.24266 1.24697 1.86509 1.18678 0.89571 0.86025 0.94335 1.17901 0.88361 0.85476 1.02827 1.86298 1.18655 1.26816 1.88698 1.22802 0.78365 0.95981 1.06971 1.19887 0.81015 0.90316 0.76182 1.90803 1.62857 1.39922 1.50356 1.49553 1.02327 1.12615 1.72037 1.23461 0.81093 0.94759 1.03313 1.23287 0.98728 0.92353 1.01364 1.22509 0.86738 0.88611 0.96888 1.23121 1.02283 0.95647 0.95174 1.20876 0.99673 0.85565 0.98769 1.23035 0.82590 0.96206 1.03652 1.70192 1.35027 0.99219 1.21977 1.22777 0.91663 0.99101 1.08049 1.23327 1.01721 0.83401 1.08360 1.43162 1.11611 1.08449 1.52254 1.23238 1.00608 0.93880 0.97340 1.20938 1.03156 0.87926 1.00486 1.20519 0.92350 0.82823 1.16916 1.43406 1.00868 1.02905 0.97508 1.94519 0.96085 1.93903 1.55246 1.94477 1.64634 1.24727 1.52043 1.19328 0.90905 0.96143 0.94161 1.25216 1.10951 0.93362 0.91234 1.86385 1.77647 1.45480 1.26820 0.93560 0.75725 0.85861 0.76870 1.21051 1.01303 0.89507 1.08681 0.90841 0.85217 0.90789 0.85568 0.85715 0.86828 0.87664 0.87874 0.85310 0.87013 0.93085 0.90161 0.80685 0.76585 0.72290 0.89659 0.85124 0.79337 0.87999 0.73914 1.19586 1.20358 0.81362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 9.81 113.37 1.11 1.11 16 2 O -0.31 -2.27 10.28 -79.66 -0.82 -3.09 16 3 C 0.16 1.05 6.70 22.57 0.15 1.20 16 4 C 0.10 0.60 6.70 22.57 0.15 0.75 16 5 O -0.29 -2.43 9.45 -67.06 -0.63 -3.06 16 6 C 0.04 0.00 5.06 71.23 0.36 0.36 16 7 C 0.54 3.19 8.14 87.66 0.71 3.90 16 8 O -0.56 -9.86 16.28 16.02 0.26 -9.60 16 9 N -0.63 1.15 3.69 -821.22 -3.03 -1.88 16 10 C 0.09 -1.11 8.42 82.26 0.69 -0.42 16 11 C -0.12 1.46 8.23 30.73 0.25 1.71 16 12 C 0.14 -0.57 1.44 -0.58 0.00 -0.57 16 13 C -0.12 -0.30 7.17 30.93 0.22 -0.08 16 14 C -0.03 -0.14 4.29 -10.92 -0.05 -0.19 16 15 C 0.21 1.51 7.36 138.13 1.02 2.53 16 16 N -0.54 -7.98 11.25 -188.13 -2.12 -10.10 16 17 C -0.07 -0.56 11.87 83.52 0.99 0.43 16 18 C -0.03 0.00 12.04 83.09 1.00 1.00 16 19 N -0.55 0.71 5.94 -186.27 -1.11 -0.40 16 20 C -0.11 0.60 7.43 30.93 0.23 0.83 16 21 C -0.11 -0.32 8.54 22.35 0.19 -0.13 16 22 C -0.04 -0.27 6.85 36.38 0.25 -0.02 16 23 N 0.04 0.34 4.45 -46.46 -0.21 0.13 16 24 O -0.19 -1.87 18.44 18.88 0.35 -1.52 16 25 O -0.14 -1.30 14.62 25.11 0.37 -0.93 16 26 C 0.00 -0.02 5.29 -19.86 -0.11 -0.12 16 27 C -0.10 -0.03 1.73 71.24 0.12 0.09 16 28 O -0.55 -0.43 11.77 -129.62 -1.53 -1.96 16 29 Si 0.78 -3.60 30.19 68.60 2.07 -1.52 16 30 C -0.19 -0.70 7.65 22.35 0.17 -0.53 16 31 H 0.07 -0.25 7.68 -2.39 -0.02 -0.27 16 32 H 0.13 -0.57 8.14 -2.38 -0.02 -0.59 16 33 H 0.07 -0.30 7.65 -2.38 -0.02 -0.32 16 34 H 0.13 -0.79 7.66 -2.38 -0.02 -0.81 16 35 H 0.13 -0.73 7.66 -2.39 -0.02 -0.75 16 36 H 0.11 -1.74 8.14 -2.39 -0.02 -1.76 16 37 H 0.11 -1.58 8.14 -2.39 -0.02 -1.60 16 38 H 0.10 -1.18 8.14 -2.39 -0.02 -1.20 16 39 H 0.13 -2.28 8.14 -2.39 -0.02 -2.30 16 40 H 0.11 -0.14 8.09 -2.39 -0.02 -0.16 16 41 H 0.05 0.52 7.86 -2.39 -0.02 0.50 16 42 H 0.08 1.12 7.73 -2.39 -0.02 1.10 16 43 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.22 -1.84 8.06 -2.91 -0.02 -1.86 16 45 H 0.44 -4.27 7.53 -92.71 -0.70 -4.96 16 46 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 47 H 0.13 -1.67 6.63 -2.39 -0.02 -1.69 16 48 H 0.19 -0.52 5.85 -2.91 -0.02 -0.54 16 49 H 0.10 -0.03 6.07 -2.38 -0.01 -0.04 16 50 H 0.41 -3.84 8.74 -74.05 -0.65 -4.49 16 51 H -0.27 0.29 6.74 99.48 0.67 0.96 16 52 H -0.28 0.02 7.11 99.48 0.71 0.73 16 53 H 0.17 0.05 3.13 -2.91 -0.01 0.05 16 Total: 0.00 -42.45 442.20 0.77 -41.69 By element: Atomic # 1 Polarization: -19.28 SS G_CDS: -0.32 Total: -19.59 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 7.48 Total: 11.85 kcal Atomic # 7 Polarization: -5.79 SS G_CDS: -6.46 Total: -12.25 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -2.00 Total: -20.17 kcal Atomic # 14 Polarization: -3.60 SS G_CDS: 2.07 Total: -1.52 kcal Total: -42.45 0.77 -41.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15706034_4549636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.853 kcal (2) G-P(sol) polarization free energy of solvation -42.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds