Wall clock time and date at job start Sun Mar 7 2021 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99674 * 2 1 4 4 C 1.38677 * 119.99704 * 179.97438 * 3 2 1 5 5 C 1.38154 * 120.00142 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00320 * 179.97438 * 5 4 3 7 7 O 1.42899 * 109.47323 * 255.02394 * 6 5 4 8 8 Si 1.86303 * 109.47185 * 15.02104 * 6 5 4 9 9 C 1.38683 * 119.99676 * 359.97438 * 5 4 3 10 10 O 1.35984 * 119.99845 * 179.97438 * 9 5 4 11 11 C 1.42898 * 117.00076 * 179.97438 * 10 9 5 12 12 C 1.50696 * 109.47213 * 180.02562 * 11 10 9 13 13 O 1.21276 * 120.00096 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99801 * 180.02562 * 12 11 10 15 15 C 1.47218 * 136.18384 * 359.97283 * 14 12 11 16 16 C 1.53636 * 88.20699 * 153.59844 * 15 14 12 17 17 C 1.46288 * 136.18059 * 179.97438 * 14 12 11 18 18 C 1.53076 * 120.98466 * 332.52919 * 17 14 12 19 19 C 1.53920 * 86.84284 * 100.33633 * 18 17 14 20 20 C 1.50700 * 113.58426 * 139.46090 * 19 18 17 21 21 N 1.30502 * 125.64838 * 95.02803 * 20 19 18 22 22 C 1.34133 * 109.25445 * 179.97438 * 21 20 19 23 23 C 1.34671 * 108.02144 * 0.02562 * 22 21 20 24 24 N 1.35045 * 125.65122 * 274.71604 * 20 19 18 25 25 C 1.53067 * 120.98635 * 80.56763 * 17 14 12 26 26 C 1.38713 * 119.99860 * 0.27980 * 9 5 4 27 27 C 1.38111 * 120.00103 * 359.44412 * 26 9 5 28 28 H 1.09002 * 109.47254 * 300.00231 * 1 2 3 29 29 H 1.09002 * 109.47041 * 60.00492 * 1 2 3 30 30 H 1.09001 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00096 * 0.04212 * 4 3 2 32 32 H 1.09000 * 109.47245 * 135.02372 * 6 5 4 33 33 H 0.96703 * 113.99786 * 299.99775 * 7 6 5 34 34 H 1.48500 * 109.99809 * 298.68315 * 8 6 5 35 35 H 1.48494 * 109.99861 * 59.99997 * 8 6 5 36 36 H 1.09008 * 109.46840 * 60.00036 * 11 10 9 37 37 H 1.09001 * 109.47227 * 300.00539 * 11 10 9 38 38 H 1.09001 * 113.43743 * 268.43772 * 15 14 12 39 39 H 1.09001 * 113.43415 * 38.76266 * 15 14 12 40 40 H 1.08997 * 114.27277 * 271.83181 * 16 15 14 41 41 H 1.08997 * 114.27693 * 138.94494 * 16 15 14 42 42 H 1.08997 * 113.65491 * 214.82570 * 18 17 14 43 43 H 1.08997 * 113.65110 * 345.85281 * 18 17 14 44 44 H 1.09002 * 113.58784 * 270.27945 * 19 18 17 45 45 H 1.07997 * 125.98664 * 179.97438 * 22 21 20 46 46 H 1.07995 * 126.59289 * 180.02562 * 23 22 21 47 47 H 0.97001 * 126.39249 * 0.02562 * 24 20 19 48 48 H 1.09003 * 113.65333 * 14.14820 * 25 17 14 49 49 H 1.09002 * 113.65468 * 145.08792 * 25 17 14 50 50 H 1.08003 * 119.99923 * 179.70452 * 26 9 5 51 51 H 1.08005 * 119.99898 * 180.26426 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 3.4312 1.2843 0.0005 5 6 4.0584 2.5152 0.0011 6 6 5.5633 2.5941 0.0022 7 8 6.0197 2.9667 1.3041 8 14 6.2726 0.9326 -0.4525 9 6 3.3030 3.6783 0.0005 10 8 3.9204 4.8899 0.0016 11 6 3.0804 6.0460 0.0004 12 6 3.9346 7.2875 0.0012 13 8 5.1436 7.1918 0.0022 14 7 3.3549 8.5042 0.0008 15 6 1.9779 9.0248 -0.0008 16 6 2.5084 10.2942 0.6830 17 6 3.8154 9.8927 0.0017 18 6 5.1678 10.2741 0.6088 19 6 5.7115 10.2979 -0.8309 20 6 6.6587 11.4389 -1.0990 21 7 7.9603 11.3804 -1.0249 22 6 8.4751 12.5811 -1.3291 23 6 7.4536 13.4154 -1.6016 24 7 6.3014 12.6898 -1.4615 25 6 4.2691 10.5734 -1.2920 26 6 1.9178 3.6056 0.0053 27 6 1.2908 2.3750 -0.0010 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.0194 0.3785 0.0003 32 1 5.8886 3.3392 -0.7238 33 1 5.6889 3.8235 1.6066 34 1 5.8624 -0.0857 0.5476 35 1 5.8054 0.5337 -1.8044 36 1 2.4498 6.0378 0.8895 37 1 2.4525 6.0379 -0.8905 38 1 1.5832 9.2039 -1.0009 39 1 1.2958 8.4485 0.6244 40 1 2.5352 10.2390 1.7713 41 1 2.0734 11.2205 0.3079 42 1 5.1700 11.2505 1.0933 43 1 5.6053 9.4914 1.2285 44 1 6.1004 9.3364 -1.1662 45 1 9.5246 12.8345 -1.3508 46 1 7.5293 14.4556 -1.8820 47 1 5.3971 13.0142 -1.5951 48 1 3.9872 10.0302 -2.1941 49 1 4.0186 11.6332 -1.3398 50 1 1.3296 4.5114 0.0097 51 1 0.2122 2.3185 -0.0016 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15706034_4974302.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:15:14 Heat of formation + Delta-G solvation = 30.513219 kcal Electronic energy + Delta-G solvation = -35710.213233 eV Core-core repulsion = 30967.147949 eV Total energy + Delta-G solvation = -4743.065284 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -43.21541 -42.19980 -41.80229 -40.38650 -39.32277 -38.11646 -37.03099 -36.97142 -33.50325 -32.97148 -31.91773 -30.87287 -30.35782 -28.94781 -28.04947 -27.07284 -26.67133 -26.01104 -24.14882 -23.42442 -22.64892 -22.50836 -22.05064 -21.22008 -19.71932 -19.14319 -19.00261 -18.75167 -18.30077 -17.97140 -17.62456 -17.39665 -17.06897 -16.80211 -16.49320 -16.26712 -16.12822 -15.83833 -15.70126 -15.51627 -15.17152 -15.14646 -14.88062 -14.69875 -14.49845 -14.22101 -14.03286 -13.99995 -13.70011 -13.62945 -13.49922 -13.42999 -13.11342 -13.03972 -12.63178 -12.48444 -12.37406 -12.30609 -12.24609 -11.84206 -11.57947 -11.31914 -11.18070 -11.16040 -11.05248 -11.04227 -10.88487 -10.27553 -9.82791 -9.37060 -8.97423 -4.89187 -0.10500 0.17641 1.05791 1.14939 1.29082 1.39127 1.55754 1.86070 2.09679 2.14445 2.19226 2.30990 2.39176 3.06378 3.27109 3.28872 3.41478 3.46319 3.49542 3.54940 3.72462 3.79002 3.82701 3.91645 3.94659 3.98754 4.00228 4.08227 4.17594 4.22994 4.24586 4.31248 4.32478 4.41550 4.47012 4.52315 4.52985 4.55758 4.62275 4.66540 4.68931 4.78384 4.84155 4.87734 4.90694 4.97560 4.99536 5.03819 5.07508 5.22743 5.27338 5.28319 5.75875 6.04228 6.28745 6.48418 6.49483 6.58866 6.96755 7.13687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.341 6.341 3 C 0.090 3.910 4 C -0.141 4.141 5 C -0.118 4.118 6 C -0.087 4.087 7 O -0.544 6.544 8 Si 0.811 3.189 9 C 0.096 3.904 10 O -0.312 6.312 11 C 0.047 3.953 12 C 0.534 3.466 13 O -0.562 6.562 14 N -0.630 5.630 15 C 0.097 3.903 16 C -0.122 4.122 17 C 0.139 3.861 18 C -0.123 4.123 19 C -0.028 4.028 20 C 0.210 3.790 21 N -0.543 5.543 22 C -0.069 4.069 23 C -0.035 4.035 24 N -0.550 5.550 25 C -0.112 4.112 26 C -0.154 4.154 27 C -0.157 4.157 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.125 0.875 32 H 0.075 0.925 33 H 0.371 0.629 34 H -0.284 1.284 35 H -0.265 1.265 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.176 0.824 46 H 0.217 0.783 47 H 0.435 0.565 48 H 0.085 0.915 49 H 0.129 0.871 50 H 0.173 0.827 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.869 8.780 -1.746 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.256 6.256 3 C 0.045 3.955 4 C -0.160 4.160 5 C -0.119 4.119 6 C -0.195 4.195 7 O -0.350 6.350 8 Si 0.712 3.288 9 C 0.051 3.949 10 O -0.225 6.225 11 C -0.031 4.031 12 C 0.324 3.676 13 O -0.439 6.439 14 N -0.366 5.366 15 C -0.024 4.024 16 C -0.159 4.159 17 C 0.053 3.947 18 C -0.163 4.163 19 C -0.048 4.048 20 C -0.055 4.055 21 N -0.264 5.264 22 C -0.216 4.216 23 C -0.169 4.169 24 N -0.155 5.155 25 C -0.151 4.151 26 C -0.172 4.172 27 C -0.176 4.176 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.142 0.858 32 H 0.093 0.907 33 H 0.219 0.781 34 H -0.211 1.211 35 H -0.191 1.191 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.128 0.872 43 H 0.070 0.930 44 H 0.099 0.901 45 H 0.193 0.807 46 H 0.234 0.766 47 H 0.277 0.723 48 H 0.103 0.897 49 H 0.147 0.853 50 H 0.191 0.809 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.222 6.277 -1.800 13.857 hybrid contribution -1.587 1.560 -0.088 2.227 sum -13.809 7.837 -1.888 15.990 Atomic orbital electron populations 1.23401 0.75915 1.05771 1.02670 1.86084 1.23921 1.26574 1.88981 1.18973 0.91645 0.85672 0.99258 1.20152 0.92936 0.96796 1.06090 1.19548 0.96750 0.90638 1.05011 1.25414 0.91327 1.14261 0.88455 1.86651 1.73994 1.42213 1.32178 0.92443 0.90120 0.69711 0.76524 1.18716 0.91664 0.84171 1.00379 1.86091 1.35445 1.11725 1.89271 1.22593 0.92437 0.81620 1.06403 1.20081 0.87829 0.83738 0.75985 1.90797 1.16412 1.86450 1.50274 1.49550 1.12004 1.02779 1.72270 1.23409 0.82686 0.93149 1.03108 1.23287 0.91714 0.99639 1.01290 1.22474 0.95349 0.80180 0.96708 1.23114 0.95463 1.02531 0.95159 1.20880 0.92098 0.93086 0.98764 1.23066 0.91390 0.87389 1.03606 1.70196 1.08019 1.26229 1.21925 1.22775 1.01074 0.89677 1.08035 1.23317 0.84724 1.00413 1.08445 1.43163 1.10530 1.09476 1.52362 1.23231 0.91468 1.02985 0.97420 1.21440 0.92019 1.00048 1.03677 1.21434 1.01730 0.90571 1.03825 0.91165 0.91084 0.86706 0.85792 0.90699 0.78084 1.21075 1.19081 0.86061 0.86229 0.86975 0.87616 0.87977 0.85531 0.87234 0.93020 0.90058 0.80718 0.76647 0.72325 0.89670 0.85316 0.80941 0.81489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.06 9.81 113.37 1.11 1.06 16 2 O -0.34 -2.24 10.50 -93.40 -0.98 -3.22 16 3 C 0.09 0.63 6.68 22.49 0.15 0.78 16 4 C -0.14 -1.51 8.59 22.35 0.19 -1.32 16 5 C -0.12 -1.17 5.27 -19.78 -0.10 -1.27 16 6 C -0.09 -0.87 2.33 71.23 0.17 -0.71 16 7 O -0.54 -6.51 12.65 -148.98 -1.89 -8.39 16 8 Si 0.81 5.73 30.40 68.60 2.09 7.81 16 9 C 0.10 0.55 6.62 22.49 0.15 0.69 16 10 O -0.31 -1.93 8.56 -74.33 -0.64 -2.57 16 11 C 0.05 -0.11 5.06 71.23 0.36 0.25 16 12 C 0.53 2.04 8.14 87.66 0.71 2.76 16 13 O -0.56 -8.63 16.28 16.02 0.26 -8.37 16 14 N -0.63 2.32 3.69 -821.22 -3.03 -0.71 16 15 C 0.10 -1.34 8.42 82.26 0.69 -0.65 16 16 C -0.12 1.65 8.23 30.73 0.25 1.90 16 17 C 0.14 -0.75 1.44 -0.58 0.00 -0.75 16 18 C -0.12 -0.19 7.17 30.93 0.22 0.03 16 19 C -0.03 -0.12 4.29 -10.92 -0.05 -0.16 16 20 C 0.21 1.39 7.36 138.13 1.02 2.41 16 21 N -0.54 -7.74 11.25 -188.13 -2.12 -9.85 16 22 C -0.07 -0.54 11.87 83.52 0.99 0.45 16 23 C -0.03 0.01 12.04 83.09 1.00 1.01 16 24 N -0.55 0.97 5.94 -186.27 -1.11 -0.14 16 25 C -0.11 0.72 7.43 30.93 0.23 0.94 16 26 C -0.15 0.11 9.03 22.35 0.20 0.31 16 27 C -0.16 -0.06 9.03 22.35 0.20 0.14 16 28 H 0.07 -0.43 7.66 -2.39 -0.02 -0.45 16 29 H 0.07 -0.45 7.66 -2.39 -0.02 -0.47 16 30 H 0.11 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H 0.12 1.50 4.93 -2.91 -0.01 1.49 16 32 H 0.07 0.76 7.82 -2.39 -0.02 0.74 16 33 H 0.37 3.57 8.60 -74.05 -0.64 2.93 16 34 H -0.28 -3.44 6.81 99.48 0.68 -2.77 16 35 H -0.26 -2.46 7.11 99.48 0.71 -1.75 16 36 H 0.12 -1.04 7.65 -2.38 -0.02 -1.06 16 37 H 0.12 -0.99 7.67 -2.39 -0.02 -1.01 16 38 H 0.11 -1.95 8.14 -2.39 -0.02 -1.97 16 39 H 0.11 -1.86 8.14 -2.39 -0.02 -1.88 16 40 H 0.10 -1.28 8.14 -2.39 -0.02 -1.30 16 41 H 0.13 -2.38 8.14 -2.39 -0.02 -2.40 16 42 H 0.11 -0.20 8.09 -2.39 -0.02 -0.22 16 43 H 0.05 0.48 7.86 -2.39 -0.02 0.46 16 44 H 0.08 1.05 7.73 -2.39 -0.02 1.03 16 45 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 46 H 0.22 -1.89 8.06 -2.91 -0.02 -1.91 16 47 H 0.43 -4.48 7.53 -92.71 -0.70 -5.18 16 48 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.13 -1.74 6.63 -2.39 -0.02 -1.76 16 50 H 0.17 -1.60 6.29 -2.91 -0.02 -1.61 16 51 H 0.17 -1.08 6.29 -2.91 -0.02 -1.10 16 Total: 0.00 -37.98 419.41 -0.24 -38.22 By element: Atomic # 1 Polarization: -20.32 SS G_CDS: -0.33 Total: -20.65 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: 7.50 Total: 7.87 kcal Atomic # 7 Polarization: -4.45 SS G_CDS: -6.26 Total: -10.71 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -3.24 Total: -22.54 kcal Atomic # 14 Polarization: 5.73 SS G_CDS: 2.09 Total: 7.81 kcal Total: -37.98 -0.24 -38.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15706034_4974302.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.735 kcal (2) G-P(sol) polarization free energy of solvation -37.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds