Wall clock time and date at job start Sun Mar 7 2021 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86301 * 109.47524 * 2 1 4 4 C 1.50705 * 109.47170 * 119.99585 * 2 1 3 5 5 C 1.34235 * 126.50377 * 255.02834 * 4 2 1 6 6 N 1.36835 * 109.93739 * 179.97438 * 5 4 2 7 7 C 1.46501 * 125.05910 * 180.02562 * 6 5 4 8 8 C 1.50696 * 109.47112 * 264.97428 * 7 6 5 9 9 O 1.21283 * 120.00313 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00286 * 180.02562 * 8 7 6 11 11 C 1.47221 * 136.17822 * 359.97438 * 10 8 7 12 12 C 1.53632 * 88.20222 * 206.41893 * 11 10 8 13 13 C 1.46290 * 136.18498 * 179.63176 * 10 8 7 14 14 C 1.53068 * 120.98433 * 27.44678 * 13 10 8 15 15 C 1.53921 * 86.84554 * 259.66605 * 14 13 10 16 16 C 1.50695 * 113.58673 * 220.54101 * 15 14 13 17 17 N 1.30500 * 125.65093 * 192.69729 * 16 15 14 18 18 C 1.34126 * 109.25582 * 179.97438 * 17 16 15 19 19 C 1.34672 * 108.02397 * 0.02562 * 18 17 16 20 20 N 1.35049 * 125.65157 * 12.38750 * 16 15 14 21 21 C 1.53076 * 120.98193 * 279.41224 * 13 10 8 22 22 C 1.37693 * 109.87519 * 359.97438 * 6 5 4 23 23 C 1.39084 * 133.51293 * 180.02562 * 22 6 5 24 24 C 1.37789 * 119.77891 * 180.02562 * 23 22 6 25 25 C 1.38793 * 120.66498 * 359.92148 * 24 23 22 26 26 C 1.36657 * 120.52724 * 0.06304 * 25 24 23 27 27 C 1.39595 * 119.76566 * 359.97210 * 26 25 24 28 28 H 0.96701 * 113.99574 * 300.00192 * 1 2 3 29 29 H 1.09002 * 109.47482 * 239.99516 * 2 1 3 30 30 H 1.48507 * 109.99779 * 300.00238 * 3 2 1 31 31 H 1.48497 * 109.99978 * 61.31247 * 3 2 1 32 32 H 1.07997 * 125.02549 * 0.24010 * 5 4 2 33 33 H 1.08998 * 109.47264 * 24.97729 * 7 6 5 34 34 H 1.09000 * 109.47258 * 144.97749 * 7 6 5 35 35 H 1.09000 * 113.43371 * 321.25495 * 11 10 8 36 36 H 1.09002 * 113.43194 * 91.52546 * 11 10 8 37 37 H 1.08994 * 114.27574 * 88.17186 * 12 11 10 38 38 H 1.09005 * 114.27208 * 221.05090 * 12 11 10 39 39 H 1.09000 * 113.65311 * 14.15406 * 14 13 10 40 40 H 1.08997 * 113.65582 * 145.17665 * 14 13 10 41 41 H 1.09002 * 113.58430 * 89.72163 * 15 14 13 42 42 H 1.08004 * 125.98821 * 179.97438 * 18 17 16 43 43 H 1.07991 * 126.59037 * 180.02562 * 19 18 17 44 44 H 0.97001 * 126.39472 * 0.02562 * 20 16 15 45 45 H 1.08999 * 113.65015 * 214.82059 * 21 13 10 46 46 H 1.08998 * 113.65360 * 345.75234 * 21 13 10 47 47 H 1.08008 * 120.10822 * 359.97438 * 23 22 6 48 48 H 1.07996 * 119.66801 * 179.97438 * 24 23 22 49 49 H 1.07995 * 119.73538 * 180.02562 * 25 24 23 50 50 H 1.07999 * 120.11907 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 2.4604 -0.1375 2.3232 6 7 2.8020 -1.0989 3.2350 7 6 3.4057 -0.8401 4.5445 8 6 4.9040 -0.9626 4.4399 9 8 5.4172 -1.2383 3.3762 10 7 5.6740 -0.7656 5.5285 11 6 5.4466 -0.4283 6.9434 12 6 6.8539 0.1873 6.9726 13 6 7.1053 -0.7982 5.8290 14 6 8.1449 -0.5007 4.7456 15 6 8.3322 -2.0238 4.6267 16 6 9.7696 -2.4432 4.4572 17 7 10.1789 -3.6309 4.1038 18 6 11.5192 -3.6404 4.0542 19 6 11.9573 -2.4120 4.3901 20 7 10.8476 -1.6506 4.6401 21 6 7.8283 -2.1244 6.0775 22 6 2.4928 -2.3456 2.7389 23 6 2.6270 -3.6360 3.2402 24 6 2.2136 -4.7106 2.4833 25 6 1.6621 -4.5192 1.2241 26 6 1.5207 -3.2599 0.7124 27 6 1.9334 -2.1569 1.4618 28 1 -0.3933 0.4417 0.7651 29 1 1.7924 -0.5139 -0.8899 30 1 1.5616 2.4679 -1.2085 31 1 1.5879 2.4586 1.2241 32 1 2.5924 0.9251 2.4637 33 1 3.1454 0.1663 4.8722 34 1 3.0315 -1.5655 5.2669 35 1 4.6510 0.3016 7.0926 36 1 5.3415 -1.3025 7.5859 37 1 6.8901 1.2368 6.6806 38 1 7.4188 -0.0287 7.8795 39 1 7.7250 -0.0406 3.8511 40 1 9.0270 0.0207 5.1173 41 1 7.6662 -2.4898 3.9004 42 1 12.1386 -4.4853 3.7917 43 1 12.9861 -2.0885 4.4461 44 1 10.8375 -0.7167 4.9024 45 1 8.6219 -2.0570 6.8217 46 1 7.1549 -2.9638 6.2510 47 1 3.0546 -3.7952 4.2192 48 1 2.3191 -5.7118 2.8741 49 1 1.3428 -5.3722 0.6439 50 1 1.0910 -3.1186 -0.2684 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15706034_9818708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 05:16:03 Heat of formation + Delta-G solvation = 144.286468 kcal Electronic energy + Delta-G solvation = -34784.519284 eV Core-core repulsion = 30361.873770 eV Total energy + Delta-G solvation = -4422.645514 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 379.168 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.21444 -42.59677 -41.96316 -39.49534 -38.17190 -37.67251 -36.94935 -34.12178 -33.50040 -31.87841 -30.91271 -30.33075 -30.26555 -28.65462 -27.07694 -26.04757 -25.73367 -23.88159 -23.49970 -23.04637 -22.34832 -21.97501 -21.22091 -20.70209 -19.21665 -19.00818 -18.62083 -17.80044 -17.77804 -17.35940 -16.91492 -16.82829 -16.44483 -16.24924 -16.06937 -15.81584 -15.61240 -15.40706 -15.18038 -14.90766 -14.87115 -14.72616 -14.60058 -14.29270 -14.09356 -14.01135 -13.70293 -13.58676 -13.39432 -13.24803 -13.02872 -12.75273 -12.60224 -12.44396 -12.42511 -12.32053 -12.03214 -11.76844 -11.75845 -11.19435 -11.06786 -11.05691 -10.99337 -10.56802 -10.46827 -9.78616 -9.37111 -9.19751 -8.66999 -4.87880 0.10386 0.59509 1.05468 1.25870 1.33178 1.44077 1.56267 1.62586 1.92542 1.95324 2.09012 2.17028 2.90202 3.12943 3.29819 3.34526 3.43830 3.51842 3.56541 3.64602 3.65716 3.70867 3.80177 3.91946 3.98633 4.07205 4.17990 4.18640 4.23853 4.26748 4.42744 4.46725 4.48684 4.52985 4.55562 4.56139 4.66069 4.68414 4.70832 4.75145 4.77760 4.85381 4.90152 4.92231 5.01512 5.08349 5.10084 5.25519 5.29539 5.47270 5.62762 5.69890 5.71740 5.75563 6.16945 6.21428 6.46981 6.59077 6.65077 7.00464 7.11792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.051 4.051 3 Si 0.764 3.236 4 C -0.213 4.213 5 C 0.075 3.925 6 N -0.466 5.466 7 C 0.097 3.903 8 C 0.515 3.485 9 O -0.561 6.561 10 N -0.628 5.628 11 C 0.096 3.904 12 C -0.121 4.121 13 C 0.138 3.862 14 C -0.125 4.125 15 C -0.027 4.027 16 C 0.211 3.789 17 N -0.540 5.540 18 C -0.067 4.067 19 C -0.037 4.037 20 N -0.552 5.552 21 C -0.109 4.109 22 C 0.092 3.908 23 C -0.135 4.135 24 C -0.107 4.107 25 C -0.153 4.153 26 C -0.087 4.087 27 C -0.115 4.115 28 H 0.384 0.616 29 H 0.102 0.898 30 H -0.300 1.300 31 H -0.257 1.257 32 H 0.198 0.802 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.064 0.936 40 H 0.117 0.883 41 H 0.079 0.921 42 H 0.177 0.823 43 H 0.215 0.785 44 H 0.433 0.567 45 H 0.117 0.883 46 H 0.070 0.930 47 H 0.128 0.872 48 H 0.144 0.856 49 H 0.137 0.863 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.729 7.799 11.748 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.160 4.160 3 Si 0.667 3.333 4 C -0.221 4.221 5 C -0.050 4.050 6 N -0.149 5.149 7 C -0.027 4.027 8 C 0.304 3.696 9 O -0.439 6.439 10 N -0.364 5.364 11 C -0.024 4.024 12 C -0.158 4.158 13 C 0.052 3.948 14 C -0.163 4.163 15 C -0.047 4.047 16 C -0.054 4.054 17 N -0.261 5.261 18 C -0.213 4.213 19 C -0.172 4.172 20 N -0.157 5.157 21 C -0.149 4.149 22 C -0.014 4.014 23 C -0.155 4.155 24 C -0.126 4.126 25 C -0.172 4.172 26 C -0.106 4.106 27 C -0.119 4.119 28 H 0.233 0.767 29 H 0.120 0.880 30 H -0.228 1.228 31 H -0.182 1.182 32 H 0.214 0.786 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.098 0.902 42 H 0.194 0.806 43 H 0.232 0.768 44 H 0.275 0.725 45 H 0.135 0.865 46 H 0.089 0.911 47 H 0.146 0.854 48 H 0.162 0.838 49 H 0.155 0.845 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.368 7.509 10.555 13.384 hybrid contribution -0.436 -0.046 -0.066 0.443 sum 2.932 7.463 10.489 13.203 Atomic orbital electron populations 1.86563 1.18993 1.80617 1.49837 1.24597 0.82879 1.11726 0.96767 0.94035 0.90461 0.71049 0.77783 1.20710 1.11225 0.91769 0.98372 1.22004 0.99264 0.95136 0.88634 1.43439 1.51964 1.03914 1.15553 1.21813 0.88675 1.08396 0.83835 1.21002 0.89645 0.76182 0.82790 1.90810 1.75261 1.48481 1.29308 1.49705 1.07829 1.68775 1.10052 1.23344 0.99711 1.00838 0.78549 1.23327 0.96183 0.98933 0.97375 1.22483 0.81401 0.96209 0.94752 1.23127 0.99874 0.93702 0.99622 1.20854 0.86604 0.97835 0.99399 1.23098 0.91553 0.86959 1.03749 1.70181 1.13432 1.21762 1.20712 1.22768 0.90792 0.99227 1.08560 1.23313 0.93792 0.92383 1.07664 1.43200 1.05766 1.14064 1.52718 1.23172 0.99861 0.97016 0.94857 1.18374 1.01575 0.86919 0.94487 1.20212 1.04730 0.89287 1.01317 1.21123 0.98151 0.98931 0.94425 1.20918 1.02305 0.97118 0.96869 1.20462 0.99009 0.91652 0.99451 1.19344 1.03982 0.93904 0.94688 0.76730 0.87957 1.22807 1.18234 0.78562 0.82425 0.84700 0.87244 0.88016 0.87091 0.86522 0.91692 0.86470 0.90243 0.80591 0.76818 0.72538 0.86491 0.91135 0.85417 0.83830 0.84506 0.86176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -3.99 12.88 -148.98 -1.92 -5.91 16 2 C -0.05 -0.26 3.06 71.24 0.22 -0.04 16 3 Si 0.76 0.15 30.82 68.60 2.11 2.26 16 4 C -0.21 -1.45 5.57 -18.62 -0.10 -1.55 16 5 C 0.08 0.18 9.89 83.00 0.82 1.00 16 6 N -0.47 -1.54 2.27 -520.01 -1.18 -2.71 16 7 C 0.10 -0.47 6.32 85.63 0.54 0.07 16 8 C 0.51 0.45 8.14 87.66 0.71 1.16 16 9 O -0.56 -6.62 16.20 -3.04 -0.05 -6.66 16 10 N -0.63 3.36 3.69 -820.63 -3.03 0.33 16 11 C 0.10 -1.35 8.42 82.27 0.69 -0.66 16 12 C -0.12 1.72 8.25 30.82 0.25 1.98 16 13 C 0.14 -0.87 1.44 -0.48 0.00 -0.88 16 14 C -0.12 0.37 7.11 30.93 0.22 0.59 16 15 C -0.03 -0.10 4.29 -10.92 -0.05 -0.14 16 16 C 0.21 1.33 7.36 138.13 1.02 2.35 16 17 N -0.54 -7.10 11.25 -188.13 -2.12 -9.22 16 18 C -0.07 -0.49 11.87 83.52 0.99 0.51 16 19 C -0.04 0.00 12.04 83.09 1.00 1.00 16 20 N -0.55 0.55 5.94 -186.28 -1.11 -0.56 16 21 C -0.11 0.34 7.51 30.93 0.23 0.57 16 22 C 0.09 0.83 6.80 39.03 0.27 1.09 16 23 C -0.14 -1.03 10.00 22.37 0.22 -0.81 16 24 C -0.11 -0.76 10.01 22.30 0.22 -0.54 16 25 C -0.15 -1.29 9.97 22.03 0.22 -1.07 16 26 C -0.09 -0.96 10.05 22.23 0.22 -0.74 16 27 C -0.11 -1.30 6.35 -20.20 -0.13 -1.43 16 28 H 0.38 0.17 8.70 -74.06 -0.64 -0.48 16 29 H 0.10 0.64 7.96 -2.39 -0.02 0.62 16 30 H -0.30 -2.30 7.11 99.48 0.71 -1.60 16 31 H -0.26 0.06 6.99 99.48 0.70 0.76 16 32 H 0.20 -0.92 6.27 -2.91 -0.02 -0.94 16 33 H 0.16 -2.02 8.12 -2.39 -0.02 -2.04 16 34 H 0.14 -1.17 8.14 -2.39 -0.02 -1.19 16 35 H 0.11 -2.02 8.14 -2.39 -0.02 -2.04 16 36 H 0.10 -1.58 8.14 -2.39 -0.02 -1.60 16 37 H 0.11 -1.70 8.14 -2.39 -0.02 -1.72 16 38 H 0.12 -2.05 8.14 -2.38 -0.02 -2.07 16 39 H 0.06 0.18 7.84 -2.39 -0.02 0.16 16 40 H 0.12 -1.10 6.63 -2.39 -0.02 -1.12 16 41 H 0.08 1.00 7.75 -2.39 -0.02 0.98 16 42 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 43 H 0.22 -1.77 8.06 -2.92 -0.02 -1.79 16 44 H 0.43 -3.70 7.52 -92.71 -0.70 -4.40 16 45 H 0.12 -0.76 8.09 -2.39 -0.02 -0.78 16 46 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 47 H 0.13 0.44 8.06 -2.91 -0.02 0.42 16 48 H 0.14 0.32 8.06 -2.91 -0.02 0.29 16 49 H 0.14 0.57 8.06 -2.91 -0.02 0.55 16 50 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 Total: 0.00 -36.22 417.67 -0.03 -36.25 By element: Atomic # 1 Polarization: -15.91 SS G_CDS: -0.33 Total: -16.24 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: 7.58 Total: 2.46 kcal Atomic # 7 Polarization: -4.73 SS G_CDS: -7.43 Total: -12.16 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -1.97 Total: -12.58 kcal Atomic # 14 Polarization: 0.15 SS G_CDS: 2.11 Total: 2.26 kcal Total: -36.22 -0.03 -36.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15706034_9818708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.538 kcal (2) G-P(sol) polarization free energy of solvation -36.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds