Wall clock time and date at job start Sun Mar 7 2021 04:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86303 * 109.47129 * 2 1 4 4 H 1.48503 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47198 * 300.00791 * 3 2 1 6 6 H 1.48502 * 109.46946 * 60.00520 * 3 2 1 7 7 C 1.50692 * 109.47363 * 120.00527 * 2 1 3 8 8 C 1.37857 * 119.89159 * 65.30138 * 7 2 1 9 9 C 1.39660 * 119.87528 * 180.23051 * 8 7 2 10 10 C 1.47698 * 120.16628 * 179.73952 * 9 8 7 11 11 O 1.21567 * 120.00383 * 226.20953 * 10 9 8 12 12 N 1.34779 * 119.99737 * 46.20446 * 10 9 8 13 13 C 1.46395 * 118.75453 * 176.87094 * 12 10 9 14 14 C 1.54457 * 108.77210 * 106.56398 * 13 12 10 15 15 Si 1.85201 * 107.11287 * 51.55957 * 14 13 12 16 16 C 1.87773 * 111.35990 * 191.90336 * 15 14 13 17 17 C 1.56394 * 98.98098 * 221.49431 * 16 15 14 18 18 C 1.53785 * 109.77367 * 39.37237 * 17 16 15 19 19 C 1.55679 * 111.40003 * 312.18223 * 18 17 16 20 20 C 1.85205 * 110.13767 * 315.95598 * 15 14 13 21 21 C 1.46402 * 118.75524 * 356.85184 * 12 10 9 22 22 C 1.39816 * 119.67090 * 359.46780 * 9 8 7 23 23 F 1.35101 * 120.11224 * 180.29397 * 22 9 8 24 24 C 1.38323 * 119.78076 * 0.27316 * 22 9 8 25 25 C 1.38205 * 120.11354 * 359.97438 * 24 22 9 26 26 H 0.96692 * 114.00361 * 59.99216 * 1 2 3 27 27 H 1.09008 * 109.46791 * 240.00822 * 2 1 3 28 28 H 1.07996 * 120.06258 * 359.97305 * 8 7 2 29 29 H 1.08997 * 109.59151 * 346.77842 * 13 12 10 30 30 H 1.08998 * 109.70756 * 226.42220 * 13 12 10 31 31 H 1.09004 * 109.92695 * 292.16191 * 14 13 12 32 32 H 1.09000 * 109.92779 * 170.96210 * 14 13 12 33 33 H 1.08999 * 111.49379 * 104.05112 * 16 15 14 34 34 H 1.09002 * 111.49537 * 338.93499 * 16 15 14 35 35 H 1.09006 * 109.41880 * 279.28308 * 17 16 15 36 36 H 1.08996 * 109.42621 * 159.46984 * 17 16 15 37 37 H 1.09001 * 109.09731 * 72.68773 * 18 17 16 38 38 H 1.08997 * 109.10335 * 191.66049 * 18 17 16 39 39 H 1.08997 * 111.14766 * 145.89852 * 19 18 17 40 40 H 1.09007 * 111.14372 * 270.10462 * 19 18 17 41 41 H 1.08997 * 109.92555 * 163.44117 * 20 15 14 42 42 H 1.08993 * 109.92159 * 284.64125 * 20 15 14 43 43 H 1.08997 * 109.58825 * 13.22066 * 21 12 10 44 44 H 1.09002 * 109.58417 * 133.64770 * 21 12 10 45 45 H 1.07997 * 119.94422 * 180.02562 * 24 22 9 46 46 H 1.08004 * 119.82968 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 3.5351 1.7564 -0.0006 5 1 1.5549 2.4566 -1.2124 6 1 1.5551 2.4565 1.2126 7 6 1.9314 -0.7105 1.2303 8 6 1.6896 -2.0580 1.3924 9 6 2.1512 -2.7150 2.5350 10 6 1.8907 -4.1573 2.7180 11 8 1.4856 -4.5711 3.7869 12 7 2.1021 -5.0147 1.6998 13 6 1.9017 -6.4463 1.9314 14 6 0.5975 -6.8854 1.2301 15 14 0.6966 -6.2968 -0.5231 16 6 -0.9628 -6.4451 -1.3892 17 6 -0.4689 -6.9803 -2.7732 18 6 0.6704 -7.9917 -2.5634 19 6 1.7414 -7.4439 -1.5752 20 6 1.3327 -4.5583 -0.5770 21 6 2.5231 -4.4791 0.4039 22 6 2.8659 -2.0020 3.5023 23 9 3.3217 -2.6300 4.6082 24 6 3.1053 -0.6515 3.3229 25 6 2.6399 -0.0091 2.1912 26 1 -0.3933 0.4418 -0.7649 27 1 1.7923 -0.5138 -0.8901 28 1 1.1407 -2.6035 0.6392 29 1 1.8226 -6.6357 3.0018 30 1 2.7428 -7.0061 1.5225 31 1 -0.2614 -6.4329 1.7258 32 1 0.5110 -7.9717 1.2529 33 1 -1.4504 -5.4751 -1.4870 34 1 -1.6107 -7.1660 -0.8904 35 1 -0.1075 -6.1471 -3.3760 36 1 -1.2959 -7.4679 -3.2894 37 1 0.2564 -8.9174 -2.1636 38 1 1.1436 -8.2001 -3.5230 39 1 2.1699 -8.2467 -0.9751 40 1 2.5192 -6.8930 -2.1041 41 1 1.6661 -4.3158 -1.5860 42 1 0.5494 -3.8665 -0.2672 43 1 2.8319 -3.4403 0.5207 44 1 3.3547 -5.0685 0.0177 45 1 3.6575 -0.0983 4.0682 46 1 2.8298 1.0454 2.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_12335834.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:20:50 Heat of formation + Delta-G solvation = -105.486884 kcal Electronic energy + Delta-G solvation = -28163.763693 eV Core-core repulsion = 24284.647788 eV Total energy + Delta-G solvation = -3879.115904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.142 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.13236 -41.75004 -39.97673 -37.50859 -37.44298 -36.12098 -33.65053 -32.57214 -31.73254 -30.42769 -29.66488 -26.61229 -25.78147 -24.79388 -24.20012 -23.88986 -22.46747 -21.00759 -20.38507 -18.95091 -18.73757 -18.29005 -17.89530 -17.38484 -16.72883 -16.40918 -16.20692 -16.00619 -15.85980 -15.68496 -15.56537 -15.11986 -14.81933 -14.48990 -14.34744 -14.22991 -14.17203 -13.92868 -13.86712 -13.52057 -13.49988 -13.16755 -12.71813 -12.58173 -12.50530 -12.41438 -12.29104 -12.10877 -11.97521 -11.92581 -11.73091 -11.31613 -11.19152 -10.57874 -10.40408 -10.32846 -10.28006 -10.10337 -9.87341 -9.73959 -0.43961 -0.06623 1.19654 1.40898 1.51719 1.57665 1.77120 1.78849 1.84178 1.96951 1.97930 2.27568 2.64773 2.98613 3.18471 3.35726 3.56197 3.77051 3.95438 4.05146 4.08989 4.14352 4.15908 4.18134 4.24317 4.32762 4.36291 4.45760 4.54937 4.60519 4.69701 4.69923 4.71868 4.77319 4.80487 4.82401 4.90273 4.99969 5.12475 5.13636 5.17591 5.24593 5.30872 5.36483 5.40694 5.50053 5.55981 5.56911 5.60424 6.10788 6.87191 6.91045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.079 4.079 3 Si 0.966 3.034 4 H -0.249 1.249 5 H -0.254 1.254 6 H -0.271 1.271 7 C -0.094 4.094 8 C -0.038 4.038 9 C -0.181 4.181 10 C 0.551 3.449 11 O -0.575 6.575 12 N -0.598 5.598 13 C 0.114 3.886 14 C -0.447 4.447 15 Si 1.058 2.942 16 C -0.422 4.422 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.406 4.406 20 C -0.435 4.435 21 C 0.090 3.910 22 C 0.123 3.877 23 F -0.142 7.142 24 C -0.147 4.147 25 C -0.072 4.072 26 H 0.401 0.599 27 H 0.114 0.886 28 H 0.169 0.831 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.166 0.834 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.511 3.235 -9.845 10.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.172 1.172 5 H -0.178 1.178 6 H -0.196 1.196 7 C -0.094 4.094 8 C -0.056 4.056 9 C -0.185 4.185 10 C 0.339 3.661 11 O -0.456 6.456 12 N -0.330 5.330 13 C -0.007 4.007 14 C -0.530 4.530 15 Si 1.248 2.752 16 C -0.507 4.507 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.493 4.493 20 C -0.522 4.522 21 C -0.031 4.031 22 C 0.103 3.897 23 F -0.121 7.121 24 C -0.166 4.166 25 C -0.090 4.090 26 H 0.252 0.748 27 H 0.132 0.868 28 H 0.187 0.813 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.126 0.874 45 H 0.184 0.816 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.739 3.483 -8.678 9.744 hybrid contribution -0.539 -0.619 0.387 0.907 sum 2.200 2.864 -8.291 9.043 Atomic orbital electron populations 1.86474 1.17136 1.82225 1.51363 1.24734 0.85940 1.10537 0.97664 0.85451 0.80277 0.74865 0.80370 1.17247 1.17811 1.19568 1.19586 0.99262 0.93503 0.97042 1.21590 0.95086 0.94279 0.94613 1.20029 1.06201 0.94229 0.98025 1.18553 0.77168 0.86421 0.83949 1.90795 1.47163 1.79293 1.28301 1.48133 1.66158 1.07019 1.11646 1.21437 0.98706 0.78828 1.01767 1.26969 0.98794 1.06648 1.20615 0.78686 0.66831 0.66514 0.63144 1.26820 1.15546 1.03623 1.04747 1.22062 0.97677 0.99198 0.97235 1.21886 0.95441 0.98824 1.00013 1.26558 1.04487 1.10546 1.07693 1.26784 1.02816 1.19120 1.03482 1.22167 0.98104 1.02227 0.80611 1.18044 0.96961 0.91692 0.83006 1.91525 1.86653 1.82920 1.50980 1.21282 1.03245 0.91444 1.00590 1.21349 0.95112 1.00718 0.91842 0.74782 0.86822 0.81347 0.91680 0.87611 0.92104 0.88643 0.90083 0.91342 0.90585 0.92549 0.92684 0.91817 0.90113 0.88969 0.85626 0.89640 0.88004 0.87359 0.81634 0.82935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 2.93 12.81 -148.98 -1.91 1.02 16 2 C -0.08 0.56 2.79 71.23 0.20 0.76 16 3 Si 0.97 -6.20 25.13 68.60 1.72 -4.48 16 4 H -0.25 1.48 7.11 99.48 0.71 2.19 16 5 H -0.25 1.54 7.11 99.48 0.71 2.24 16 6 H -0.27 0.60 7.04 99.48 0.70 1.30 16 7 C -0.09 0.17 5.38 -19.90 -0.11 0.06 16 8 C -0.04 -0.01 6.93 22.52 0.16 0.14 16 9 C -0.18 -1.21 5.02 -20.05 -0.10 -1.31 16 10 C 0.55 5.84 7.03 86.74 0.61 6.45 16 11 O -0.58 -11.63 15.82 -3.93 -0.06 -11.70 16 12 N -0.60 -1.51 2.55 -820.18 -2.09 -3.60 16 13 C 0.11 0.23 5.91 86.89 0.51 0.75 16 14 C -0.45 0.20 5.21 72.48 0.38 0.58 16 15 Si 1.06 -6.94 10.74 68.60 0.74 -6.20 16 16 C -0.42 1.32 5.94 73.16 0.43 1.75 16 17 C -0.12 0.41 5.97 32.04 0.19 0.60 16 18 C -0.12 0.43 6.09 31.78 0.19 0.63 16 19 C -0.41 2.61 5.84 72.91 0.43 3.03 16 20 C -0.44 3.78 4.71 72.48 0.34 4.12 16 21 C 0.09 -0.50 5.20 86.89 0.45 -0.05 16 22 C 0.12 0.97 7.25 22.67 0.16 1.14 16 23 F -0.14 -1.92 16.44 44.97 0.74 -1.18 16 24 C -0.15 -0.22 10.01 22.28 0.22 0.00 16 25 C -0.07 0.10 8.66 22.32 0.19 0.30 16 26 H 0.40 -5.63 8.74 -74.06 -0.65 -6.27 16 27 H 0.11 -1.51 7.96 -2.38 -0.02 -1.53 16 28 H 0.17 -0.60 4.27 -2.91 -0.01 -0.61 16 29 H 0.06 0.56 6.93 -2.39 -0.02 0.54 16 30 H 0.11 -0.40 8.08 -2.39 -0.02 -0.42 16 31 H 0.06 0.24 7.97 -2.39 -0.02 0.22 16 32 H 0.09 -0.20 7.97 -2.39 -0.02 -0.22 16 33 H 0.08 -0.29 8.04 -2.39 -0.02 -0.31 16 34 H 0.07 -0.07 8.04 -2.39 -0.02 -0.09 16 35 H 0.08 -0.43 8.14 -2.38 -0.02 -0.45 16 36 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.05 -0.13 8.14 -2.39 -0.02 -0.14 16 38 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.08 -0.50 8.03 -2.39 -0.02 -0.52 16 40 H 0.09 -0.80 8.03 -2.38 -0.02 -0.82 16 41 H 0.13 -1.72 7.97 -2.39 -0.02 -1.74 16 42 H 0.09 -0.65 6.01 -2.39 -0.01 -0.67 16 43 H 0.10 -0.62 4.50 -2.39 -0.01 -0.63 16 44 H 0.11 -1.10 8.08 -2.39 -0.02 -1.12 16 45 H 0.17 -0.48 8.06 -2.91 -0.02 -0.51 16 46 H 0.15 -0.83 4.84 -2.91 -0.01 -0.85 16 Total: 0.00 -22.46 358.78 4.51 -17.95 By element: Atomic # 1 Polarization: -11.87 SS G_CDS: 1.11 Total: -10.76 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 4.27 Total: 18.94 kcal Atomic # 7 Polarization: -1.51 SS G_CDS: -2.09 Total: -3.60 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -1.97 Total: -10.67 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.74 Total: -1.18 kcal Atomic # 14 Polarization: -13.14 SS G_CDS: 2.46 Total: -10.68 kcal Total: -22.46 4.51 -17.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_12335834.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.539 kcal (2) G-P(sol) polarization free energy of solvation -22.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds