Wall clock time and date at job start Sun Mar 7 2021 04:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86295 * 109.47197 * 2 1 4 4 H 1.48499 * 109.47215 * 299.99652 * 3 2 1 5 5 H 1.48502 * 109.47345 * 59.99971 * 3 2 1 6 6 H 1.48507 * 109.47098 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47320 * 239.99674 * 2 1 3 8 8 C 1.34457 * 126.48152 * 104.96183 * 7 2 1 9 9 N 1.36566 * 109.98392 * 180.02562 * 8 7 2 10 10 C 1.37828 * 109.86274 * 359.97438 * 9 8 7 11 11 C 1.38645 * 133.38607 * 180.28260 * 10 9 8 12 12 C 1.39317 * 119.66842 * 180.19300 * 11 10 9 13 13 C 1.47582 * 119.82783 * 179.77081 * 12 11 10 14 14 O 1.21590 * 120.00346 * 49.54303 * 13 12 11 15 15 N 1.34776 * 119.99463 * 229.53655 * 13 12 11 16 16 C 1.46406 * 118.75229 * 176.90927 * 15 13 12 17 17 C 1.54452 * 108.77091 * 106.56296 * 16 15 13 18 18 Si 1.85196 * 107.11292 * 51.56203 * 17 16 15 19 19 C 1.87780 * 111.35767 * 191.90000 * 18 17 16 20 20 C 1.56394 * 98.97870 * 221.49260 * 19 18 17 21 21 C 1.53776 * 109.77441 * 39.37426 * 20 19 18 22 22 C 1.55678 * 111.40077 * 312.17640 * 21 20 19 23 23 C 1.85197 * 110.13830 * 315.94841 * 18 17 16 24 24 C 1.46388 * 118.75994 * 356.88888 * 15 13 12 25 25 C 1.40201 * 120.33824 * 359.49455 * 12 11 10 26 26 C 1.36234 * 120.37433 * 0.25186 * 25 12 11 27 27 C 1.39871 * 119.96142 * 359.97438 * 26 25 12 28 28 H 0.96703 * 113.99640 * 60.00387 * 1 2 3 29 29 H 1.09003 * 109.47099 * 119.99969 * 2 1 3 30 30 H 1.07996 * 125.00945 * 0.02562 * 8 7 2 31 31 H 0.96998 * 125.07163 * 180.02562 * 9 8 7 32 32 H 1.08003 * 120.16306 * 359.94354 * 11 10 9 33 33 H 1.08998 * 109.58937 * 346.77398 * 16 15 13 34 34 H 1.09003 * 109.58124 * 226.35179 * 16 15 13 35 35 H 1.08993 * 109.92907 * 292.15621 * 17 16 15 36 36 H 1.09001 * 109.92089 * 170.96230 * 17 16 15 37 37 H 1.09008 * 111.49190 * 104.04673 * 19 18 17 38 38 H 1.09000 * 111.49657 * 338.93910 * 19 18 17 39 39 H 1.09004 * 109.42069 * 279.28196 * 20 19 18 40 40 H 1.09004 * 109.41932 * 159.47275 * 20 19 18 41 41 H 1.09003 * 109.09749 * 72.69009 * 21 20 19 42 42 H 1.08998 * 109.10152 * 191.66482 * 21 20 19 43 43 H 1.08997 * 111.14491 * 145.89831 * 22 21 20 44 44 H 1.08994 * 111.14452 * 270.10890 * 22 21 20 45 45 H 1.09002 * 109.92765 * 163.44278 * 23 18 17 46 46 H 1.08996 * 109.92716 * 284.64461 * 23 18 17 47 47 H 1.09005 * 109.58977 * 13.21773 * 24 15 13 48 48 H 1.09006 * 109.59260 * 133.64791 * 24 15 13 49 49 H 1.07998 * 119.81122 * 180.23367 * 25 12 11 50 50 H 1.08000 * 120.01777 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 1 1.5550 2.4564 -1.2125 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7564 0.0006 7 6 1.9313 -0.7105 -1.2304 8 6 2.4610 -0.1363 -2.3248 9 7 2.8026 -1.0948 -3.2357 10 6 2.4948 -2.3433 -2.7395 11 6 2.6359 -3.6284 -3.2403 12 6 2.2140 -4.7157 -2.4781 13 6 2.3579 -6.0848 -3.0098 14 8 3.4223 -6.4492 -3.4711 15 7 1.3095 -6.9313 -2.9839 16 6 1.4619 -8.2597 -3.5803 17 6 1.5569 -9.3052 -2.4474 18 14 0.1141 -9.0213 -1.3216 19 6 0.2996 -9.9796 0.2826 20 6 -1.1737 -10.4801 0.4397 21 6 -1.7357 -10.8825 -0.9340 22 6 -1.4533 -9.7892 -2.0057 23 6 -0.1000 -7.2094 -1.0039 24 6 0.0615 -6.4880 -2.3602 25 6 1.6587 -4.5161 -1.2063 26 6 1.5212 -3.2570 -0.7045 27 6 1.9358 -2.1550 -1.4596 28 1 -0.3933 0.4417 -0.7651 29 1 1.7923 -0.5138 0.8900 30 1 2.5963 0.9261 -2.4631 31 1 3.2029 -0.9227 -4.1023 32 1 3.0671 -3.7856 -4.2179 33 1 2.3709 -8.2883 -4.1812 34 1 0.5988 -8.4792 -4.2089 35 1 2.4887 -9.1736 -1.8976 36 1 1.5098 -10.3108 -2.8653 37 1 0.5897 -9.3271 1.1063 38 1 0.9946 -10.8120 0.1726 39 1 -1.7846 -9.6820 0.8616 40 1 -1.1945 -11.3422 1.1065 41 1 -1.2732 -11.8182 -1.2484 42 1 -2.8124 -11.0297 -0.8497 43 1 -1.2779 -10.2345 -2.9849 44 1 -2.2627 -9.0604 -2.0466 45 1 -1.0931 -7.0182 -0.5975 46 1 0.6614 -6.8622 -0.3055 47 1 0.0961 -5.4105 -2.1991 48 1 -0.7792 -6.7359 -3.0082 49 1 1.3380 -5.3653 -0.6212 50 1 1.0931 -3.1100 0.2760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15733048_12335838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:21:14 Heat of formation + Delta-G solvation = -39.447421 kcal Electronic energy + Delta-G solvation = -30017.148786 eV Core-core repulsion = 26132.934733 eV Total energy + Delta-G solvation = -3884.214053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.163 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.49101 -41.09801 -37.95460 -37.49371 -37.22911 -36.22370 -33.28053 -32.78837 -31.02541 -30.56433 -29.92107 -29.77709 -26.51081 -25.36564 -24.80475 -24.17185 -23.59351 -22.91639 -21.10373 -20.84321 -20.21431 -19.24763 -18.49781 -17.59555 -17.32998 -16.99704 -16.26780 -16.12837 -16.05003 -15.96686 -15.72228 -15.50184 -15.16674 -15.11996 -14.78139 -14.71784 -14.57649 -14.29166 -14.26007 -14.03676 -13.95935 -13.51139 -13.43919 -12.99681 -12.69512 -12.62050 -12.51904 -12.48260 -12.31495 -12.21567 -12.16447 -12.09648 -11.98365 -11.77286 -11.42739 -10.87446 -10.70072 -10.51914 -10.45069 -10.34567 -10.32377 -9.65699 -9.23842 -8.78009 -0.12699 0.47014 1.15312 1.35424 1.41729 1.50562 1.62278 1.71985 1.74300 1.83039 1.90496 1.96332 2.15502 2.55716 2.85430 3.47417 3.56610 3.65400 3.78304 3.88896 4.00456 4.05564 4.06984 4.09426 4.14797 4.24358 4.31482 4.33885 4.37465 4.45855 4.55114 4.56752 4.56861 4.60757 4.61737 4.72659 4.80483 4.83416 4.94559 5.00789 5.02488 5.05658 5.12989 5.16605 5.28432 5.32910 5.35775 5.44890 5.46634 5.47823 5.52213 5.63159 5.66174 6.03224 6.34230 6.38351 6.62870 7.22149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.044 4.044 3 Si 0.946 3.054 4 H -0.254 1.254 5 H -0.250 1.250 6 H -0.250 1.250 7 C -0.207 4.207 8 C 0.064 3.936 9 N -0.584 5.584 10 C 0.086 3.914 11 C -0.072 4.072 12 C -0.110 4.110 13 C 0.561 3.439 14 O -0.532 6.532 15 N -0.608 5.608 16 C 0.120 3.880 17 C -0.429 4.429 18 Si 0.997 3.003 19 C -0.405 4.405 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.405 4.405 23 C -0.433 4.433 24 C 0.105 3.895 25 C -0.124 4.124 26 C -0.069 4.069 27 C -0.067 4.067 28 H 0.374 0.626 29 H 0.115 0.885 30 H 0.172 0.828 31 H 0.421 0.579 32 H 0.128 0.872 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.138 0.862 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.112 2.430 -0.522 3.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.155 4.155 3 Si 0.768 3.232 4 H -0.177 1.177 5 H -0.174 1.174 6 H -0.174 1.174 7 C -0.215 4.215 8 C -0.064 4.064 9 N -0.187 5.187 10 C -0.020 4.020 11 C -0.093 4.093 12 C -0.115 4.115 13 C 0.350 3.650 14 O -0.409 6.409 15 N -0.342 5.342 16 C -0.001 4.001 17 C -0.516 4.516 18 Si 1.191 2.809 19 C -0.492 4.492 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.491 4.491 23 C -0.520 4.520 24 C -0.018 4.018 25 C -0.143 4.143 26 C -0.088 4.088 27 C -0.072 4.072 28 H 0.221 0.779 29 H 0.132 0.868 30 H 0.189 0.811 31 H 0.259 0.741 32 H 0.146 0.854 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.120 0.880 48 H 0.097 0.903 49 H 0.155 0.845 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.090 2.822 -0.368 3.531 hybrid contribution -0.053 -0.178 -0.904 0.923 sum -2.143 2.644 -1.272 3.633 Atomic orbital electron populations 1.86520 1.17467 1.81627 1.48823 1.24260 0.84614 1.09439 0.97182 0.85798 0.80591 0.75215 0.81571 1.17727 1.17372 1.17395 1.20709 1.10510 0.92293 0.97962 1.21754 1.00548 0.94385 0.89727 1.41687 1.54798 1.04052 1.18126 1.18039 1.02990 0.86125 0.94879 1.19910 1.00802 0.88228 1.00366 1.19407 1.03512 0.92321 0.96220 1.18409 0.83716 0.84863 0.78036 1.90808 1.26669 1.77465 1.45985 1.48016 1.12886 1.14987 1.58272 1.21318 1.03697 0.79963 0.95170 1.26659 1.15027 1.01817 1.08093 0.79574 0.67160 0.66531 0.67611 1.26638 0.98095 1.08450 1.15998 1.22025 0.95208 1.01387 0.97277 1.21836 1.01221 0.98694 0.93841 1.26507 1.15496 1.04975 1.02157 1.26772 1.05826 1.19542 0.99855 1.21743 0.85497 1.01253 0.93262 1.21019 1.00357 0.97937 0.94972 1.20230 0.98600 0.90347 0.99579 1.19116 1.01537 0.92921 0.93594 0.77937 0.86757 0.81105 0.74148 0.85379 0.88621 0.90515 0.89927 0.89293 0.90318 0.90297 0.91775 0.91668 0.92020 0.91882 0.90303 0.90382 0.88732 0.89677 0.88040 0.90262 0.84482 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.05 12.88 -35.23 -0.45 -0.40 16 2 C -0.04 0.04 3.06 36.01 0.11 0.15 16 3 Si 0.95 -1.49 26.08 -169.99 -4.43 -5.93 16 4 H -0.25 0.52 7.03 56.52 0.40 0.92 16 5 H -0.25 -0.04 7.11 56.52 0.40 0.36 16 6 H -0.25 0.17 7.11 56.52 0.40 0.57 16 7 C -0.21 -0.04 5.57 -102.74 -0.57 -0.62 16 8 C 0.06 -0.08 10.43 -16.78 -0.17 -0.25 16 9 N -0.58 0.54 6.07 -10.68 -0.06 0.47 16 10 C 0.09 0.13 7.26 -84.00 -0.61 -0.48 16 11 C -0.07 -0.15 9.73 -39.03 -0.38 -0.53 16 12 C -0.11 -0.27 4.88 -104.95 -0.51 -0.78 16 13 C 0.56 2.03 7.17 -12.45 -0.09 1.94 16 14 O -0.53 -3.86 16.30 5.29 0.09 -3.78 16 15 N -0.61 -0.51 2.55 -173.24 -0.44 -0.95 16 16 C 0.12 0.04 5.91 -3.33 -0.02 0.02 16 17 C -0.43 0.30 5.21 37.92 0.20 0.50 16 18 Si 1.00 -2.34 10.74 -169.99 -1.83 -4.16 16 19 C -0.41 0.41 5.94 38.98 0.23 0.64 16 20 C -0.12 0.09 5.97 -24.50 -0.15 -0.06 16 21 C -0.12 0.10 6.09 -24.90 -0.15 -0.05 16 22 C -0.40 0.71 5.84 38.58 0.23 0.94 16 23 C -0.43 1.04 4.80 37.93 0.18 1.22 16 24 C 0.10 -0.15 5.21 -3.34 -0.02 -0.17 16 25 C -0.12 -0.12 7.26 -39.57 -0.29 -0.41 16 26 C -0.07 -0.08 10.03 -39.69 -0.40 -0.48 16 27 C -0.07 -0.12 6.35 -105.04 -0.67 -0.79 16 28 H 0.37 -1.23 8.70 45.56 0.40 -0.84 16 29 H 0.11 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.17 -0.67 6.29 -52.49 -0.33 -1.00 16 31 H 0.42 -1.53 8.96 -40.82 -0.37 -1.89 16 32 H 0.13 0.19 8.06 -52.48 -0.42 -0.23 16 33 H 0.10 0.21 6.93 -51.93 -0.36 -0.15 16 34 H 0.08 -0.13 8.08 -51.93 -0.42 -0.55 16 35 H 0.08 0.06 7.97 -51.93 -0.41 -0.35 16 36 H 0.09 -0.13 7.97 -51.93 -0.41 -0.55 16 37 H 0.08 -0.09 8.04 -51.92 -0.42 -0.50 16 38 H 0.08 -0.05 8.04 -51.93 -0.42 -0.47 16 39 H 0.06 -0.08 8.14 -51.93 -0.42 -0.50 16 40 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 41 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 42 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 43 H 0.08 -0.15 8.03 -51.93 -0.42 -0.56 16 44 H 0.08 -0.16 8.03 -51.93 -0.42 -0.58 16 45 H 0.09 -0.32 7.97 -51.93 -0.41 -0.74 16 46 H 0.08 -0.19 5.89 -51.93 -0.31 -0.49 16 47 H 0.10 -0.11 4.69 -51.93 -0.24 -0.36 16 48 H 0.08 -0.22 8.08 -51.93 -0.42 -0.64 16 49 H 0.14 -0.08 4.58 -52.49 -0.24 -0.32 16 50 H 0.13 -0.02 8.06 -52.49 -0.42 -0.45 16 LS Contribution 387.48 15.07 5.84 5.84 Total: 0.00 -8.06 387.48 -11.32 -19.38 By element: Atomic # 1 Polarization: -4.31 SS G_CDS: -6.95 Total: -11.26 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -3.08 Total: 0.79 kcal Atomic # 7 Polarization: 0.02 SS G_CDS: -0.51 Total: -0.48 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.37 Total: -4.18 kcal Atomic # 14 Polarization: -3.83 SS G_CDS: -6.26 Total: -10.09 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -8.06 -11.32 -19.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_12335838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.069 kcal (2) G-P(sol) polarization free energy of solvation -8.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds