Wall clock time and date at job start Sun Mar 7 2021 04:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86302 * 109.47199 * 2 1 4 4 H 1.48499 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47157 * 299.99905 * 3 2 1 6 6 H 1.48491 * 109.47062 * 60.00363 * 3 2 1 7 7 C 1.50697 * 109.47265 * 120.00423 * 2 1 3 8 8 C 1.38400 * 119.82916 * 64.99508 * 7 2 1 9 9 C 1.37892 * 120.17170 * 180.02562 * 8 7 2 10 10 C 1.39839 * 119.82661 * 359.97438 * 9 8 7 11 11 C 1.47206 * 120.16965 * 180.02562 * 10 9 8 12 12 C 1.34813 * 119.99929 * 180.02562 * 11 10 9 13 13 C 1.46426 * 120.00071 * 180.02562 * 12 11 10 14 14 O 1.21699 * 119.99650 * 4.91911 * 13 12 11 15 15 N 1.34768 * 119.99991 * 184.64660 * 13 12 11 16 16 C 1.46401 * 118.75458 * 174.60992 * 15 13 12 17 17 C 1.53911 * 109.06407 * 253.44448 * 16 15 13 18 18 Si 1.85194 * 107.12952 * 308.57400 * 17 16 15 19 19 C 1.87451 * 111.52580 * 168.31246 * 18 17 16 20 20 C 1.55689 * 100.84631 * 114.79978 * 19 18 17 21 21 C 1.53776 * 111.39724 * 27.99686 * 20 19 18 22 22 C 1.56394 * 109.77516 * 312.17549 * 21 20 19 23 23 C 1.85198 * 110.13846 * 43.93368 * 18 17 16 24 24 C 1.46407 * 118.75507 * 354.87354 * 15 13 12 25 25 C 1.39837 * 119.65812 * 0.27723 * 10 9 8 26 26 C 1.37888 * 119.82558 * 359.46889 * 25 10 9 27 27 H 0.96698 * 113.99539 * 299.99885 * 1 2 3 28 28 H 1.09010 * 109.46638 * 240.00133 * 2 1 3 29 29 H 1.07994 * 119.91551 * 0.02562 * 8 7 2 30 30 H 1.07999 * 120.09011 * 179.97438 * 9 8 7 31 31 H 1.08001 * 120.00026 * 0.02562 * 11 10 9 32 32 H 1.08006 * 119.99590 * 359.97438 * 12 11 10 33 33 H 1.08998 * 109.58781 * 13.19837 * 16 15 13 34 34 H 1.09002 * 109.58415 * 133.62341 * 16 15 13 35 35 H 1.08996 * 110.00662 * 189.11992 * 17 16 15 36 36 H 1.09008 * 109.84014 * 67.93364 * 17 16 15 37 37 H 1.08997 * 111.14634 * 232.69319 * 19 18 17 38 38 H 1.08999 * 111.14122 * 356.90388 * 19 18 17 39 39 H 1.09000 * 109.10399 * 267.48526 * 20 19 18 40 40 H 1.08994 * 109.10601 * 148.50898 * 20 19 18 41 41 H 1.09008 * 109.42006 * 192.08261 * 21 20 19 42 42 H 1.08998 * 109.42229 * 72.26914 * 21 20 19 43 43 H 1.09005 * 111.49345 * 281.94497 * 22 21 20 44 44 H 1.09000 * 111.49765 * 156.83047 * 22 21 20 45 45 H 1.09002 * 109.92293 * 196.56667 * 23 18 17 46 46 H 1.09000 * 109.93031 * 75.37253 * 23 18 17 47 47 H 1.09000 * 109.58512 * 226.37411 * 24 15 13 48 48 H 1.08997 * 109.58597 * 346.80260 * 24 15 13 49 49 H 1.08001 * 120.08627 * 179.69994 * 25 10 9 50 50 H 1.07999 * 119.91625 * 180.23319 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 3.5351 1.7564 -0.0006 5 1 1.5551 2.4565 -1.2125 6 1 1.5552 2.4564 1.2125 7 6 1.9314 -0.7105 1.2304 8 6 1.6824 -2.0619 1.3948 9 6 2.1384 -2.7190 2.5182 10 6 2.8544 -2.0163 3.4923 11 6 3.3452 -2.7103 4.6942 12 6 4.0347 -2.0294 5.6314 13 6 4.5233 -2.7198 6.8267 14 8 4.3857 -3.9244 6.9325 15 7 5.1303 -2.0221 7.8070 16 6 5.5010 -2.7178 9.0407 17 6 4.5401 -2.2932 10.1655 18 14 4.5145 -0.4416 10.1909 19 6 3.1279 0.2123 11.2697 20 6 3.9401 0.9123 12.3985 21 6 5.3074 1.3969 11.8880 22 6 6.0109 0.2505 11.0900 23 6 4.4008 0.2184 8.4643 24 6 5.3887 -0.5960 7.6003 25 6 3.0974 -0.6498 3.3214 26 6 2.6394 -0.0081 2.1901 27 1 -0.3932 0.4417 0.7651 28 1 1.7923 -0.5139 -0.8901 29 1 1.1296 -2.6033 0.6414 30 1 1.9430 -3.7735 2.6453 31 1 3.1528 -3.7649 4.8251 32 1 4.2274 -0.9748 5.5002 33 1 5.4280 -3.7947 8.8890 34 1 6.5221 -2.4539 9.3162 35 1 4.8959 -2.6729 11.1231 36 1 3.5399 -2.6757 9.9616 37 1 2.5117 0.9288 10.7266 38 1 2.5224 -0.6018 11.6679 39 1 4.0938 0.2084 13.2164 40 1 3.3739 1.7672 12.7679 41 1 5.9300 1.6833 12.7357 42 1 5.1660 2.2586 11.2357 43 1 6.4523 -0.4888 11.7585 44 1 6.7493 0.6446 10.3919 45 1 4.6773 1.2726 8.4506 46 1 3.3864 0.0945 8.0852 47 1 6.4114 -0.3632 7.8970 48 1 5.2455 -0.3473 6.5488 49 1 3.6455 -0.0993 4.0717 50 1 2.8295 1.0464 2.0548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15733048_12360594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:35 Heat of formation + Delta-G solvation = -61.994501 kcal Electronic energy + Delta-G solvation = -27412.428761 eV Core-core repulsion = 23720.889044 eV Total energy + Delta-G solvation = -3691.539717 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.167 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.15093 -40.56994 -37.87836 -37.27238 -36.26879 -35.17654 -32.85931 -32.23954 -31.29763 -30.35027 -29.82261 -27.22624 -25.18287 -24.67624 -24.23233 -24.08774 -22.88280 -21.43823 -21.08588 -19.51386 -19.09144 -18.28927 -17.31287 -16.92440 -16.71638 -16.34333 -16.26310 -16.10024 -15.79206 -15.70100 -15.30595 -15.00461 -14.83670 -14.80787 -14.44056 -14.38436 -14.21955 -14.10496 -13.87359 -13.65059 -13.49971 -13.17349 -12.99348 -12.75835 -12.60969 -12.42076 -12.31407 -12.25116 -12.24031 -12.09741 -12.03967 -11.62705 -11.47383 -11.35001 -10.91381 -10.55037 -10.48970 -10.48035 -10.36439 -10.06188 -9.70964 -9.27579 -0.57678 0.30656 0.88977 1.07532 1.35792 1.44641 1.58843 1.67233 1.73527 1.84590 1.99546 2.29404 2.51223 2.76314 3.34362 3.42555 3.54074 3.71317 3.76925 3.89123 3.96743 4.01536 4.03084 4.06964 4.11315 4.24249 4.25826 4.27572 4.33733 4.35956 4.45770 4.50383 4.52886 4.56674 4.64783 4.75948 4.76712 4.89742 4.93511 4.97036 5.01602 5.03870 5.07554 5.08655 5.15363 5.23738 5.28396 5.31440 5.40367 5.40690 5.42025 5.55818 5.59881 5.81807 6.34002 6.46555 7.22847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.083 4.083 3 Si 0.950 3.050 4 H -0.250 1.250 5 H -0.253 1.253 6 H -0.251 1.251 7 C -0.108 4.108 8 C -0.091 4.091 9 C -0.092 4.092 10 C -0.072 4.072 11 C -0.017 4.017 12 C -0.219 4.219 13 C 0.547 3.453 14 O -0.542 6.542 15 N -0.612 5.612 16 C 0.120 3.880 17 C -0.429 4.429 18 Si 0.997 3.003 19 C -0.406 4.406 20 C -0.119 4.119 21 C -0.121 4.121 22 C -0.404 4.404 23 C -0.432 4.432 24 C 0.113 3.887 25 C -0.096 4.096 26 C -0.127 4.127 27 H 0.377 0.623 28 H 0.120 0.880 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.130 0.870 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.051 4.177 0.444 4.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.194 4.194 3 Si 0.772 3.228 4 H -0.173 1.173 5 H -0.177 1.177 6 H -0.175 1.175 7 C -0.109 4.109 8 C -0.109 4.109 9 C -0.110 4.110 10 C -0.072 4.072 11 C -0.036 4.036 12 C -0.239 4.239 13 C 0.338 3.662 14 O -0.421 6.421 15 N -0.345 5.345 16 C -0.002 4.002 17 C -0.516 4.516 18 Si 1.191 2.809 19 C -0.493 4.493 20 C -0.157 4.157 21 C -0.158 4.158 22 C -0.490 4.490 23 C -0.519 4.519 24 C -0.009 4.009 25 C -0.114 4.114 26 C -0.145 4.145 27 H 0.224 0.776 28 H 0.137 0.863 29 H 0.150 0.850 30 H 0.150 0.850 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.102 0.898 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.148 0.852 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.406 4.058 -0.069 4.296 hybrid contribution -0.223 0.052 0.737 0.772 sum 1.183 4.111 0.668 4.329 Atomic orbital electron populations 1.86535 1.16952 1.81594 1.49110 1.25030 0.85274 1.10722 0.98369 0.85675 0.80597 0.75242 0.81250 1.17327 1.17714 1.17528 1.20488 0.98725 0.95100 0.96560 1.20999 0.98645 0.93614 0.97679 1.21479 0.96198 1.00214 0.93131 1.19071 0.99667 0.93562 0.94869 1.22435 0.91131 0.99942 0.90133 1.23091 1.04192 1.01005 0.95601 1.18411 0.77521 0.86845 0.83456 1.90816 1.57051 1.14221 1.79986 1.47957 1.59848 1.09957 1.16758 1.21174 0.97565 0.99212 0.82257 1.26575 1.03003 1.20914 1.01135 0.79577 0.68488 0.66444 0.66393 1.26484 1.09495 1.05494 1.07823 1.21843 0.95017 1.00446 0.98347 1.22019 0.95524 0.98139 1.00163 1.26663 1.10936 1.04284 1.07156 1.26668 1.02689 1.04940 1.17579 1.21550 0.99168 0.78899 1.01305 1.21320 0.98962 0.93700 0.97370 1.20996 0.99259 0.99757 0.94503 0.77601 0.86267 0.84969 0.84990 0.84470 0.84808 0.88499 0.90614 0.89206 0.90138 0.90478 0.90310 0.91974 0.91896 0.91603 0.91832 0.90218 0.90338 0.89054 0.89805 0.90152 0.89156 0.85250 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.15 12.83 -35.23 -0.45 -0.30 16 2 C -0.08 0.09 2.80 36.00 0.10 0.19 16 3 Si 0.95 -1.22 25.12 -169.99 -4.27 -5.49 16 4 H -0.25 0.17 7.11 56.52 0.40 0.58 16 5 H -0.25 -0.09 7.11 56.52 0.40 0.31 16 6 H -0.25 0.32 7.04 56.52 0.40 0.72 16 7 C -0.11 0.04 5.36 -104.50 -0.56 -0.52 16 8 C -0.09 0.01 9.66 -39.65 -0.38 -0.37 16 9 C -0.09 0.01 9.80 -39.11 -0.38 -0.38 16 10 C -0.07 -0.02 5.87 -105.06 -0.62 -0.63 16 11 C -0.02 -0.01 9.46 -37.16 -0.35 -0.36 16 12 C -0.22 -0.09 8.62 -37.50 -0.32 -0.41 16 13 C 0.55 1.49 7.55 -12.97 -0.10 1.39 16 14 O -0.54 -3.51 15.50 5.19 0.08 -3.43 16 15 N -0.61 -0.18 2.56 -174.02 -0.44 -0.63 16 16 C 0.12 0.02 5.91 -3.62 -0.02 -0.01 16 17 C -0.43 0.40 5.19 37.63 0.20 0.60 16 18 Si 1.00 -2.60 10.74 -169.99 -1.83 -4.42 16 19 C -0.41 0.48 5.84 38.59 0.23 0.71 16 20 C -0.12 0.09 6.10 -24.89 -0.15 -0.06 16 21 C -0.12 0.15 5.97 -24.50 -0.15 0.00 16 22 C -0.40 0.82 5.95 38.98 0.23 1.05 16 23 C -0.43 1.25 5.21 37.92 0.20 1.45 16 24 C 0.11 -0.28 5.77 -3.33 -0.02 -0.30 16 25 C -0.10 0.06 9.41 -39.11 -0.37 -0.31 16 26 C -0.13 0.08 8.65 -39.65 -0.34 -0.27 16 27 H 0.38 -1.29 8.70 45.56 0.40 -0.89 16 28 H 0.12 -0.22 7.96 -51.92 -0.41 -0.63 16 29 H 0.13 -0.13 8.06 -52.49 -0.42 -0.55 16 30 H 0.13 -0.20 8.06 -52.49 -0.42 -0.62 16 31 H 0.14 0.18 7.53 -52.49 -0.40 -0.22 16 32 H 0.13 -0.29 3.88 -52.48 -0.20 -0.50 16 33 H 0.10 0.22 6.87 -51.93 -0.36 -0.14 16 34 H 0.08 -0.13 8.08 -51.93 -0.42 -0.55 16 35 H 0.09 -0.15 7.97 -51.93 -0.41 -0.56 16 36 H 0.08 0.03 7.97 -51.92 -0.41 -0.38 16 37 H 0.08 -0.10 8.03 -51.93 -0.42 -0.51 16 38 H 0.08 -0.07 8.03 -51.93 -0.42 -0.49 16 39 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 41 H 0.07 -0.06 8.14 -51.92 -0.42 -0.49 16 42 H 0.06 -0.11 8.14 -51.93 -0.42 -0.53 16 43 H 0.08 -0.15 8.04 -51.93 -0.42 -0.56 16 44 H 0.08 -0.20 8.04 -51.93 -0.42 -0.62 16 45 H 0.09 -0.36 7.97 -51.93 -0.41 -0.77 16 46 H 0.08 -0.20 7.97 -51.93 -0.41 -0.61 16 47 H 0.08 -0.30 8.08 -51.93 -0.42 -0.72 16 48 H 0.09 -0.32 5.29 -51.93 -0.27 -0.59 16 49 H 0.13 -0.35 6.17 -52.49 -0.32 -0.67 16 50 H 0.12 -0.24 4.84 -52.49 -0.25 -0.49 16 LS Contribution 391.20 15.07 5.90 5.90 Total: 0.00 -6.87 391.20 -11.16 -18.03 By element: Atomic # 1 Polarization: -4.10 SS G_CDS: -7.33 Total: -11.43 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -2.81 Total: 1.78 kcal Atomic # 7 Polarization: -0.18 SS G_CDS: -0.44 Total: -0.63 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.37 Total: -3.73 kcal Atomic # 14 Polarization: -3.82 SS G_CDS: -6.10 Total: -9.91 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -6.87 -11.16 -18.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_12360594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.965 kcal (2) G-P(sol) polarization free energy of solvation -6.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds