Wall clock time and date at job start Sun Mar 7 2021 04:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86302 * 109.47199 * 2 1 4 4 H 1.48499 * 109.46860 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47157 * 299.99905 * 3 2 1 6 6 H 1.48491 * 109.47062 * 60.00363 * 3 2 1 7 7 C 1.50697 * 109.47265 * 120.00423 * 2 1 3 8 8 C 1.38400 * 119.82916 * 64.99508 * 7 2 1 9 9 C 1.37892 * 120.17170 * 180.02562 * 8 7 2 10 10 C 1.39839 * 119.82661 * 359.97438 * 9 8 7 11 11 C 1.47206 * 120.16965 * 180.02562 * 10 9 8 12 12 C 1.34813 * 119.99929 * 180.02562 * 11 10 9 13 13 C 1.46426 * 120.00071 * 180.02562 * 12 11 10 14 14 O 1.21699 * 119.99650 * 4.91911 * 13 12 11 15 15 N 1.34768 * 119.99991 * 184.64660 * 13 12 11 16 16 C 1.46401 * 118.75458 * 174.60992 * 15 13 12 17 17 C 1.53911 * 109.06407 * 253.44448 * 16 15 13 18 18 Si 1.85194 * 107.12952 * 308.57400 * 17 16 15 19 19 C 1.87451 * 111.52580 * 168.31246 * 18 17 16 20 20 C 1.55689 * 100.84631 * 114.79978 * 19 18 17 21 21 C 1.53776 * 111.39724 * 27.99686 * 20 19 18 22 22 C 1.56394 * 109.77516 * 312.17549 * 21 20 19 23 23 C 1.85198 * 110.13846 * 43.93368 * 18 17 16 24 24 C 1.46407 * 118.75507 * 354.87354 * 15 13 12 25 25 C 1.39837 * 119.65812 * 0.27723 * 10 9 8 26 26 C 1.37888 * 119.82558 * 359.46889 * 25 10 9 27 27 H 0.96698 * 113.99539 * 299.99885 * 1 2 3 28 28 H 1.09010 * 109.46638 * 240.00133 * 2 1 3 29 29 H 1.07994 * 119.91551 * 0.02562 * 8 7 2 30 30 H 1.07999 * 120.09011 * 179.97438 * 9 8 7 31 31 H 1.08001 * 120.00026 * 0.02562 * 11 10 9 32 32 H 1.08006 * 119.99590 * 359.97438 * 12 11 10 33 33 H 1.08998 * 109.58781 * 13.19837 * 16 15 13 34 34 H 1.09002 * 109.58415 * 133.62341 * 16 15 13 35 35 H 1.08996 * 110.00662 * 189.11992 * 17 16 15 36 36 H 1.09008 * 109.84014 * 67.93364 * 17 16 15 37 37 H 1.08997 * 111.14634 * 232.69319 * 19 18 17 38 38 H 1.08999 * 111.14122 * 356.90388 * 19 18 17 39 39 H 1.09000 * 109.10399 * 267.48526 * 20 19 18 40 40 H 1.08994 * 109.10601 * 148.50898 * 20 19 18 41 41 H 1.09008 * 109.42006 * 192.08261 * 21 20 19 42 42 H 1.08998 * 109.42229 * 72.26914 * 21 20 19 43 43 H 1.09005 * 111.49345 * 281.94497 * 22 21 20 44 44 H 1.09000 * 111.49765 * 156.83047 * 22 21 20 45 45 H 1.09002 * 109.92293 * 196.56667 * 23 18 17 46 46 H 1.09000 * 109.93031 * 75.37253 * 23 18 17 47 47 H 1.09000 * 109.58512 * 226.37411 * 24 15 13 48 48 H 1.08997 * 109.58597 * 346.80260 * 24 15 13 49 49 H 1.08001 * 120.08627 * 179.69994 * 25 10 9 50 50 H 1.07999 * 119.91625 * 180.23319 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 3.5351 1.7564 -0.0006 5 1 1.5551 2.4565 -1.2125 6 1 1.5552 2.4564 1.2125 7 6 1.9314 -0.7105 1.2304 8 6 1.6824 -2.0619 1.3948 9 6 2.1384 -2.7190 2.5182 10 6 2.8544 -2.0163 3.4923 11 6 3.3452 -2.7103 4.6942 12 6 4.0347 -2.0294 5.6314 13 6 4.5233 -2.7198 6.8267 14 8 4.3857 -3.9244 6.9325 15 7 5.1303 -2.0221 7.8070 16 6 5.5010 -2.7178 9.0407 17 6 4.5401 -2.2932 10.1655 18 14 4.5145 -0.4416 10.1909 19 6 3.1279 0.2123 11.2697 20 6 3.9401 0.9123 12.3985 21 6 5.3074 1.3969 11.8880 22 6 6.0109 0.2505 11.0900 23 6 4.4008 0.2184 8.4643 24 6 5.3887 -0.5960 7.6003 25 6 3.0974 -0.6498 3.3214 26 6 2.6394 -0.0081 2.1901 27 1 -0.3932 0.4417 0.7651 28 1 1.7923 -0.5139 -0.8901 29 1 1.1296 -2.6033 0.6414 30 1 1.9430 -3.7735 2.6453 31 1 3.1528 -3.7649 4.8251 32 1 4.2274 -0.9748 5.5002 33 1 5.4280 -3.7947 8.8890 34 1 6.5221 -2.4539 9.3162 35 1 4.8959 -2.6729 11.1231 36 1 3.5399 -2.6757 9.9616 37 1 2.5117 0.9288 10.7266 38 1 2.5224 -0.6018 11.6679 39 1 4.0938 0.2084 13.2164 40 1 3.3739 1.7672 12.7679 41 1 5.9300 1.6833 12.7357 42 1 5.1660 2.2586 11.2357 43 1 6.4523 -0.4888 11.7585 44 1 6.7493 0.6446 10.3919 45 1 4.6773 1.2726 8.4506 46 1 3.3864 0.0945 8.0852 47 1 6.4114 -0.3632 7.8970 48 1 5.2455 -0.3473 6.5488 49 1 3.6455 -0.0993 4.0717 50 1 2.8295 1.0464 2.0548 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_12360594.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:37:34 Heat of formation + Delta-G solvation = -53.839191 kcal Electronic energy + Delta-G solvation = -27412.075120 eV Core-core repulsion = 23720.889044 eV Total energy + Delta-G solvation = -3691.186076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.167 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.22333 -40.52288 -37.80776 -37.34833 -36.14700 -35.17934 -32.77818 -32.15884 -31.24723 -30.28923 -29.68044 -27.18030 -25.09423 -24.59987 -24.08448 -24.01315 -22.83130 -21.39407 -20.97578 -19.53163 -19.06177 -18.25565 -17.29895 -16.89617 -16.65828 -16.35214 -16.17088 -15.99016 -15.72401 -15.61049 -15.23959 -14.98039 -14.78314 -14.74129 -14.36821 -14.27941 -14.14883 -14.05532 -13.81457 -13.56146 -13.37969 -13.09653 -12.97189 -12.61890 -12.49587 -12.30199 -12.22580 -12.15282 -12.11973 -12.02829 -11.92474 -11.54138 -11.36159 -11.35799 -11.04405 -10.44171 -10.39198 -10.34338 -10.24030 -9.99187 -9.73618 -9.23439 -0.56872 0.37919 0.87079 1.19058 1.47503 1.54268 1.76093 1.84763 1.91829 1.93911 2.02927 2.21674 2.65761 2.80402 3.38420 3.55563 3.63806 3.79323 3.87725 4.01851 4.09850 4.13140 4.13803 4.15015 4.25576 4.31198 4.34300 4.37989 4.44570 4.45261 4.61285 4.62927 4.67693 4.70508 4.73583 4.83895 4.86806 4.96238 5.03188 5.09742 5.11831 5.13214 5.13967 5.20602 5.30780 5.35757 5.37833 5.40918 5.47359 5.52700 5.58032 5.58404 5.61856 5.89315 6.31225 6.70181 7.11435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.084 4.084 3 Si 0.983 3.017 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.246 1.246 7 C -0.111 4.111 8 C -0.102 4.102 9 C -0.102 4.102 10 C -0.081 4.081 11 C -0.020 4.020 12 C -0.216 4.216 13 C 0.535 3.465 14 O -0.594 6.594 15 N -0.606 5.606 16 C 0.114 3.886 17 C -0.444 4.444 18 Si 1.053 2.947 19 C -0.424 4.424 20 C -0.124 4.124 21 C -0.125 4.125 22 C -0.407 4.407 23 C -0.430 4.430 24 C 0.102 3.898 25 C -0.096 4.096 26 C -0.134 4.134 27 H 0.389 0.611 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.165 0.835 33 H 0.066 0.934 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.107 0.893 49 H 0.153 0.847 50 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.947 6.425 0.134 6.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.179 1.179 5 H -0.205 1.205 6 H -0.170 1.170 7 C -0.111 4.111 8 C -0.120 4.120 9 C -0.120 4.120 10 C -0.082 4.082 11 C -0.040 4.040 12 C -0.236 4.236 13 C 0.328 3.672 14 O -0.477 6.477 15 N -0.337 5.337 16 C -0.008 4.008 17 C -0.528 4.528 18 Si 1.243 2.757 19 C -0.509 4.509 20 C -0.162 4.162 21 C -0.162 4.162 22 C -0.493 4.493 23 C -0.518 4.518 24 C -0.019 4.019 25 C -0.113 4.113 26 C -0.152 4.152 27 H 0.238 0.762 28 H 0.141 0.859 29 H 0.153 0.847 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.182 0.818 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.110 0.890 45 H 0.131 0.869 46 H 0.100 0.900 47 H 0.120 0.880 48 H 0.125 0.875 49 H 0.171 0.829 50 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.299 6.317 -0.328 6.730 hybrid contribution -0.538 -0.673 0.877 1.229 sum 1.761 5.644 0.548 5.937 Atomic orbital electron populations 1.86503 1.17434 1.81971 1.50100 1.25111 0.84952 1.11073 0.98312 0.85202 0.79771 0.74278 0.80014 1.17854 1.20545 1.17004 1.20631 0.98587 0.95043 0.96880 1.21110 0.99035 0.94023 0.97831 1.21643 0.96290 1.00731 0.93303 1.19100 1.00224 0.94189 0.94641 1.22399 0.91421 0.99440 0.90710 1.23184 1.03865 1.02168 0.94358 1.18890 0.77381 0.86452 0.84510 1.90788 1.59311 1.16478 1.81150 1.48106 1.58492 1.11166 1.15977 1.21235 0.99123 0.97765 0.82697 1.26824 1.01589 1.23507 1.00859 0.78775 0.66969 0.63642 0.66311 1.26685 1.10317 1.05465 1.08396 1.21899 0.95599 1.00218 0.98477 1.22053 0.94994 0.98800 1.00389 1.26726 1.11365 1.03978 1.07278 1.26631 1.02575 1.06082 1.16481 1.21905 1.00561 0.76844 1.02615 1.21596 0.98594 0.93294 0.97846 1.21206 0.99092 1.00503 0.94370 0.76182 0.85906 0.84657 0.84477 0.86062 0.81759 0.91539 0.88280 0.88840 0.92125 0.90250 0.91223 0.92499 0.92394 0.92044 0.90870 0.90482 0.88971 0.86852 0.90009 0.87959 0.87548 0.82904 0.84410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.45 12.83 -148.98 -1.91 -1.46 16 2 C -0.08 0.22 2.80 71.24 0.20 0.42 16 3 Si 0.98 -3.28 25.12 68.60 1.72 -1.56 16 4 H -0.25 0.65 7.11 99.48 0.71 1.36 16 5 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 6 H -0.25 1.04 7.04 99.48 0.70 1.74 16 7 C -0.11 0.14 5.36 -19.79 -0.11 0.03 16 8 C -0.10 0.00 9.66 22.23 0.21 0.22 16 9 C -0.10 -0.05 9.80 22.58 0.22 0.18 16 10 C -0.08 -0.03 5.87 -20.15 -0.12 -0.15 16 11 C -0.02 -0.04 9.46 23.84 0.23 0.18 16 12 C -0.22 -0.11 8.62 23.62 0.20 0.09 16 13 C 0.54 3.42 7.55 86.38 0.65 4.07 16 14 O -0.59 -9.33 15.50 -4.35 -0.07 -9.39 16 15 N -0.61 -0.23 2.56 -822.69 -2.10 -2.34 16 16 C 0.11 0.12 5.91 86.71 0.51 0.63 16 17 C -0.44 0.42 5.19 72.29 0.38 0.80 16 18 Si 1.05 -6.46 10.74 68.60 0.74 -5.72 16 19 C -0.42 0.99 5.84 72.91 0.43 1.41 16 20 C -0.12 0.19 6.10 31.78 0.19 0.38 16 21 C -0.12 0.44 5.97 32.04 0.19 0.63 16 22 C -0.41 2.32 5.95 73.16 0.43 2.76 16 23 C -0.43 3.57 5.21 72.48 0.38 3.95 16 24 C 0.10 -0.74 5.77 86.89 0.50 -0.24 16 25 C -0.10 0.25 9.41 22.57 0.21 0.47 16 26 C -0.13 0.34 8.65 22.23 0.19 0.54 16 27 H 0.39 -2.81 8.70 -74.06 -0.64 -3.46 16 28 H 0.12 -0.47 7.96 -2.38 -0.02 -0.49 16 29 H 0.14 -0.19 8.06 -2.91 -0.02 -0.21 16 30 H 0.14 -0.23 8.06 -2.91 -0.02 -0.25 16 31 H 0.12 0.61 7.53 -2.91 -0.02 0.59 16 32 H 0.17 -1.10 3.88 -2.91 -0.01 -1.12 16 33 H 0.07 0.48 6.87 -2.39 -0.02 0.47 16 34 H 0.10 -0.40 8.08 -2.39 -0.02 -0.41 16 35 H 0.09 -0.21 7.97 -2.39 -0.02 -0.23 16 36 H 0.06 0.18 7.97 -2.38 -0.02 0.16 16 37 H 0.08 -0.23 8.03 -2.39 -0.02 -0.25 16 38 H 0.07 -0.05 8.03 -2.39 -0.02 -0.07 16 39 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.06 -0.16 8.14 -2.38 -0.02 -0.18 16 42 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 43 H 0.08 -0.37 8.04 -2.38 -0.02 -0.39 16 44 H 0.09 -0.74 8.04 -2.39 -0.02 -0.76 16 45 H 0.11 -1.34 7.97 -2.39 -0.02 -1.36 16 46 H 0.08 -0.57 7.97 -2.39 -0.02 -0.59 16 47 H 0.10 -1.13 8.08 -2.39 -0.02 -1.15 16 48 H 0.11 -1.10 5.29 -2.39 -0.01 -1.12 16 49 H 0.15 -1.26 6.17 -2.91 -0.02 -1.28 16 50 H 0.14 -0.81 4.84 -2.91 -0.01 -0.83 16 Total: 0.00 -18.36 391.20 4.33 -14.03 By element: Atomic # 1 Polarization: -10.96 SS G_CDS: 1.04 Total: -9.92 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 4.91 Total: 16.36 kcal Atomic # 7 Polarization: -0.23 SS G_CDS: -2.10 Total: -2.34 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: -1.98 Total: -10.86 kcal Atomic # 14 Polarization: -9.74 SS G_CDS: 2.46 Total: -7.28 kcal Total: -18.36 4.33 -14.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_12360594.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.808 kcal (2) G-P(sol) polarization free energy of solvation -18.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds