Wall clock time and date at job start Sun Mar 7 2021 04:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86295 * 109.47086 * 2 1 4 4 H 1.48502 * 109.47422 * 299.99855 * 3 2 1 5 5 H 1.48497 * 109.47179 * 59.99853 * 3 2 1 6 6 H 1.48501 * 109.46979 * 180.02562 * 3 2 1 7 7 C 1.50705 * 109.46932 * 239.99898 * 2 1 3 8 8 C 1.34828 * 125.65333 * 300.00053 * 7 2 1 9 9 C 1.40800 * 107.05224 * 180.02562 * 8 7 2 10 10 C 1.36113 * 106.72843 * 359.97438 * 9 8 7 11 11 C 1.47569 * 125.93964 * 179.97438 * 10 9 8 12 12 C 1.39566 * 119.95088 * 179.97438 * 11 10 9 13 13 C 1.38321 * 119.81335 * 179.72292 * 12 11 10 14 14 O 1.35668 * 120.14149 * 180.29581 * 13 12 11 15 15 C 1.40369 * 119.72027 * 0.55099 * 13 12 11 16 16 C 1.47299 * 120.04725 * 179.74589 * 15 13 12 17 17 O 1.21627 * 119.99717 * 55.58427 * 16 15 13 18 18 N 1.34776 * 120.00292 * 235.59337 * 16 15 13 19 19 C 1.46395 * 118.75754 * 175.64677 * 18 16 15 20 20 C 1.54456 * 108.77108 * 106.60181 * 19 18 16 21 21 Si 1.85196 * 107.11472 * 51.56146 * 20 19 18 22 22 C 1.87773 * 111.35879 * 191.90113 * 21 20 19 23 23 C 1.56402 * 98.98057 * 221.49106 * 22 21 20 24 24 C 1.53781 * 109.76949 * 39.37805 * 23 22 21 25 25 C 1.55693 * 111.39787 * 312.17295 * 24 23 22 26 26 C 1.85206 * 110.13597 * 315.95328 * 21 20 19 27 27 C 1.46401 * 118.75338 * 355.66536 * 18 16 15 28 28 C 1.39917 * 119.91068 * 359.46948 * 15 13 12 29 29 C 1.36386 * 120.18410 * 0.25448 * 28 15 13 30 30 O 1.34236 * 125.65010 * 120.33104 * 7 2 1 31 31 H 0.96703 * 114.00102 * 60.00006 * 1 2 3 32 32 H 1.09000 * 109.46957 * 119.99993 * 2 1 3 33 33 H 1.08002 * 126.47773 * 0.05574 * 8 7 2 34 34 H 1.07995 * 126.63605 * 179.97438 * 9 8 7 35 35 H 1.07996 * 120.09971 * 0.02562 * 12 11 10 36 36 H 0.96701 * 114.00181 * 270.26029 * 14 13 12 37 37 H 1.08996 * 109.58702 * 346.81770 * 19 18 16 38 38 H 1.08994 * 109.70861 * 226.45886 * 19 18 16 39 39 H 1.08998 * 109.92812 * 292.15745 * 20 19 18 40 40 H 1.09002 * 109.92409 * 170.96450 * 20 19 18 41 41 H 1.09006 * 111.49438 * 104.05019 * 22 21 20 42 42 H 1.08992 * 111.49790 * 338.93696 * 22 21 20 43 43 H 1.09001 * 109.42056 * 279.28786 * 23 22 21 44 44 H 1.08991 * 109.42186 * 159.47058 * 23 22 21 45 45 H 1.08993 * 109.10516 * 72.68755 * 24 23 22 46 46 H 1.08996 * 109.10013 * 191.66781 * 24 23 22 47 47 H 1.09004 * 111.14120 * 145.89825 * 25 24 23 48 48 H 1.08997 * 111.14436 * 270.10978 * 25 24 23 49 49 H 1.09001 * 109.92052 * 163.44179 * 26 21 20 50 50 H 1.08996 * 109.92463 * 284.63598 * 26 21 20 51 51 H 1.09001 * 109.58577 * 13.17474 * 27 18 16 52 52 H 1.09000 * 109.58606 * 133.60636 * 27 18 16 53 53 H 1.08000 * 119.91014 * 180.22723 * 28 15 13 54 54 H 1.07996 * 119.86400 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5550 2.4565 -1.2125 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7564 -0.0006 7 6 1.9313 -0.7105 -1.2305 8 6 1.6768 -1.9939 -1.5559 9 6 2.3338 -2.2489 -2.7748 10 6 2.9601 -1.0942 -3.1314 11 6 3.7759 -0.8902 -4.3440 12 6 4.3633 0.3522 -4.5877 13 6 5.1322 0.5386 -5.7223 14 8 5.7112 1.7417 -5.9627 15 6 5.3065 -0.5207 -6.6266 16 6 6.1193 -0.3285 -7.8400 17 8 7.2679 0.0607 -7.7471 18 7 5.5902 -0.5836 -9.0530 19 6 6.3883 -0.2920 -10.2450 20 6 6.8802 -1.6244 -10.8520 21 14 5.3962 -2.7147 -11.0484 22 6 5.8934 -4.4831 -11.4370 23 6 4.8183 -4.8052 -12.5264 24 6 4.6096 -3.5784 -13.4299 25 6 4.4233 -2.2802 -12.5908 26 6 4.3373 -2.6295 -9.5313 27 6 4.2388 -1.1416 -9.1286 28 6 4.7120 -1.7612 -6.3710 29 6 3.9593 -1.9426 -5.2483 30 8 2.7114 -0.1721 -2.1811 31 1 -0.3933 0.4417 -0.7651 32 1 1.7923 -0.5138 0.8900 33 1 1.0811 -2.6940 -0.9890 34 1 2.3396 -3.1804 -3.3212 35 1 4.2220 1.1643 -3.8900 36 1 5.1588 2.3490 -6.4739 37 1 7.2454 0.3225 -9.9696 38 1 5.7778 0.2388 -10.9754 39 1 7.6004 -2.0943 -10.1822 40 1 7.3391 -1.4428 -11.8239 41 1 5.7850 -5.1292 -10.5658 42 1 6.9028 -4.5338 -11.8449 43 1 3.8767 -5.0626 -12.0414 44 1 5.1557 -5.6472 -13.1307 45 1 5.4770 -3.4620 -14.0794 46 1 3.7238 -3.7354 -14.0454 47 1 4.8561 -1.4183 -13.0988 48 1 3.3722 -2.1100 -12.3579 49 1 3.3439 -3.0219 -9.7492 50 1 4.7957 -3.2030 -8.7257 51 1 3.7538 -1.0576 -8.1560 52 1 3.6604 -0.5983 -9.8758 53 1 4.8492 -2.5773 -7.0650 54 1 3.5024 -2.9021 -5.0563 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_12807986.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:41:15 Heat of formation + Delta-G solvation = -91.221336 kcal Electronic energy + Delta-G solvation = -35682.630787 eV Core-core repulsion = 31096.007035 eV Total energy + Delta-G solvation = -4586.623752 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 401.166 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.74098 -41.87092 -40.01399 -38.19258 -37.89894 -37.27098 -36.12655 -34.31599 -33.77527 -32.26810 -31.32427 -30.88802 -29.97330 -29.66487 -27.04897 -25.11536 -24.64439 -24.11250 -24.08408 -23.39194 -22.40038 -21.52804 -21.03601 -20.58017 -19.66250 -18.66858 -18.52190 -17.83203 -17.52620 -17.37685 -17.14970 -16.68760 -16.05712 -15.99374 -15.89958 -15.76099 -15.58351 -15.51580 -15.14798 -14.91304 -14.57779 -14.46317 -14.20220 -14.16262 -14.05757 -13.94456 -13.85669 -13.65137 -13.54217 -13.37247 -13.28735 -12.84210 -12.70772 -12.56136 -12.54526 -12.34981 -12.29287 -12.11658 -12.07272 -11.94310 -11.87811 -11.32972 -11.16231 -11.02426 -10.75064 -10.55141 -10.38976 -10.32749 -10.24780 -9.99589 -9.73519 -8.99077 -0.71277 0.09081 0.69348 1.03064 1.35554 1.38566 1.44158 1.63996 1.73594 1.77855 1.85966 1.87121 1.88821 1.99785 2.50147 2.66219 2.91262 3.26075 3.35115 3.46220 3.62724 3.88958 3.99650 4.01187 4.09148 4.12230 4.15797 4.17312 4.20120 4.27752 4.34927 4.36634 4.45248 4.46791 4.60122 4.62618 4.68796 4.69691 4.71378 4.75472 4.80207 4.85449 4.90257 5.01989 5.07542 5.08600 5.12139 5.15877 5.18692 5.24024 5.33046 5.38422 5.40214 5.45599 5.52131 5.55272 5.57092 5.59743 5.97659 6.19839 6.55403 6.59857 7.02346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.030 4.030 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.252 1.252 6 H -0.271 1.271 7 C -0.058 4.058 8 C -0.178 4.178 9 C -0.171 4.171 10 C 0.003 3.997 11 C 0.019 3.981 12 C -0.147 4.147 13 C 0.148 3.852 14 O -0.503 6.503 15 C -0.165 4.165 16 C 0.556 3.444 17 O -0.572 6.572 18 N -0.600 5.600 19 C 0.115 3.885 20 C -0.446 4.446 21 Si 1.059 2.941 22 C -0.423 4.423 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.409 4.409 26 C -0.432 4.432 27 C 0.098 3.902 28 C -0.062 4.062 29 C -0.101 4.101 30 O -0.185 6.185 31 H 0.393 0.607 32 H 0.153 0.847 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.135 0.865 36 H 0.409 0.591 37 H 0.065 0.935 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.119 0.881 50 H 0.087 0.913 51 H 0.100 0.900 52 H 0.103 0.897 53 H 0.166 0.834 54 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -3.523 -2.619 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.344 6.344 2 C -0.141 4.141 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.176 1.176 6 H -0.195 1.195 7 C -0.108 4.108 8 C -0.197 4.197 9 C -0.190 4.190 10 C -0.046 4.046 11 C 0.018 3.982 12 C -0.166 4.166 13 C 0.102 3.898 14 O -0.316 6.316 15 C -0.169 4.169 16 C 0.345 3.655 17 O -0.451 6.451 18 N -0.332 5.332 19 C -0.007 4.007 20 C -0.530 4.530 21 Si 1.249 2.751 22 C -0.508 4.508 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.495 4.495 26 C -0.519 4.519 27 C -0.023 4.023 28 C -0.080 4.080 29 C -0.119 4.119 30 O -0.083 6.083 31 H 0.243 0.757 32 H 0.170 0.830 33 H 0.188 0.812 34 H 0.200 0.800 35 H 0.153 0.847 36 H 0.269 0.731 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.080 0.920 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.108 0.892 49 H 0.138 0.862 50 H 0.106 0.894 51 H 0.118 0.882 52 H 0.121 0.879 53 H 0.183 0.817 54 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.553 -2.656 -1.739 7.281 hybrid contribution 0.112 0.158 -0.907 0.927 sum -6.441 -2.499 -2.646 7.398 Atomic orbital electron populations 1.86550 1.16016 1.81844 1.49950 1.24301 0.85079 1.10805 0.93933 0.85193 0.79226 0.74552 0.80692 1.18542 1.17566 1.19541 1.23376 0.98554 0.95300 0.93524 1.21830 1.03851 0.95797 0.98198 1.22257 0.99799 0.99080 0.97818 1.20558 1.04002 0.88793 0.91263 1.17901 0.95283 0.94028 0.90947 1.21505 0.98360 0.98526 0.98169 1.18323 0.92658 0.86202 0.92577 1.84814 1.45625 1.24015 1.77157 1.20408 1.03039 0.97051 0.96412 1.18477 0.85980 0.76721 0.84337 1.90821 1.19570 1.47594 1.87118 1.48168 1.17543 1.62527 1.05000 1.21394 0.95914 0.97447 0.85903 1.26946 1.15884 1.06326 1.03803 0.78688 0.65166 0.64778 0.66515 1.26840 1.01079 1.20541 1.02352 1.22064 0.99110 0.97983 0.97096 1.21889 1.01640 0.93992 0.98690 1.26590 1.09113 0.99079 1.14734 1.26730 1.12374 0.97601 1.15200 1.21954 0.81101 0.94076 1.05203 1.21215 0.93714 0.95417 0.97687 1.21025 0.99200 0.99181 0.92479 1.83929 1.55467 1.40338 1.28601 0.75679 0.82972 0.81208 0.80000 0.84691 0.73120 0.91654 0.87862 0.91999 0.88895 0.90012 0.91355 0.90697 0.92615 0.92679 0.91973 0.90162 0.89166 0.86238 0.89420 0.88208 0.87879 0.81685 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.36 12.87 -148.98 -1.92 -0.56 16 2 C -0.03 0.08 2.98 71.24 0.21 0.29 16 3 Si 0.98 -0.32 27.38 68.60 1.88 1.56 16 4 H -0.26 -0.39 7.11 99.48 0.71 0.31 16 5 H -0.25 -0.20 7.11 99.48 0.71 0.51 16 6 H -0.27 -0.99 7.11 99.48 0.71 -0.29 16 7 C -0.06 -0.05 6.22 24.90 0.15 0.11 16 8 C -0.18 0.14 10.76 22.11 0.24 0.38 16 9 C -0.17 0.29 10.26 22.40 0.23 0.52 16 10 C 0.00 0.01 7.02 24.24 0.17 0.18 16 11 C 0.02 0.02 5.87 -20.08 -0.12 -0.10 16 12 C -0.15 -0.58 9.65 22.61 0.22 -0.36 16 13 C 0.15 0.82 6.70 22.81 0.15 0.97 16 14 O -0.50 -3.50 12.73 -88.01 -1.12 -4.62 16 15 C -0.17 -0.62 4.70 -19.97 -0.09 -0.71 16 16 C 0.56 4.11 6.75 86.63 0.58 4.70 16 17 O -0.57 -10.18 16.09 -2.27 -0.04 -10.22 16 18 N -0.60 0.09 2.55 -820.62 -2.09 -2.00 16 19 C 0.12 0.02 5.90 86.89 0.51 0.53 16 20 C -0.45 0.78 5.21 72.48 0.38 1.16 16 21 Si 1.06 -7.89 10.74 68.60 0.74 -7.15 16 22 C -0.42 1.58 5.94 73.17 0.43 2.01 16 23 C -0.13 0.42 5.97 32.04 0.19 0.61 16 24 C -0.12 0.43 6.10 31.79 0.19 0.63 16 25 C -0.41 2.71 5.84 72.91 0.43 3.13 16 26 C -0.43 4.30 4.95 72.48 0.36 4.66 16 27 C 0.10 -0.73 5.25 86.89 0.46 -0.27 16 28 C -0.06 0.17 7.42 22.24 0.16 0.33 16 29 C -0.10 0.40 9.48 22.26 0.21 0.61 16 30 O -0.19 -0.77 8.78 -6.01 -0.05 -0.82 16 31 H 0.39 -3.35 8.70 -74.06 -0.64 -4.00 16 32 H 0.15 -0.89 7.96 -2.39 -0.02 -0.91 16 33 H 0.17 -0.67 8.06 -2.91 -0.02 -0.70 16 34 H 0.18 -1.44 7.24 -2.91 -0.02 -1.47 16 35 H 0.14 0.57 7.89 -2.91 -0.02 0.54 16 36 H 0.41 -1.15 9.06 -74.06 -0.67 -1.82 16 37 H 0.06 0.43 6.95 -2.39 -0.02 0.41 16 38 H 0.10 -0.56 8.08 -2.39 -0.02 -0.58 16 39 H 0.06 0.15 7.97 -2.39 -0.02 0.13 16 40 H 0.09 -0.27 7.97 -2.39 -0.02 -0.29 16 41 H 0.08 -0.37 8.04 -2.38 -0.02 -0.39 16 42 H 0.07 -0.11 8.04 -2.39 -0.02 -0.13 16 43 H 0.07 -0.42 8.14 -2.39 -0.02 -0.44 16 44 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.06 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.08 -0.52 8.03 -2.38 -0.02 -0.54 16 48 H 0.09 -0.78 8.03 -2.39 -0.02 -0.80 16 49 H 0.12 -1.65 7.97 -2.39 -0.02 -1.67 16 50 H 0.09 -0.89 5.98 -2.39 -0.01 -0.91 16 51 H 0.10 -0.80 4.89 -2.39 -0.01 -0.81 16 52 H 0.10 -1.17 8.08 -2.39 -0.02 -1.19 16 53 H 0.17 -1.24 5.29 -2.91 -0.02 -1.26 16 54 H 0.17 -1.79 6.95 -2.91 -0.02 -1.81 16 Total: 0.00 -25.85 429.19 2.87 -22.99 By element: Atomic # 1 Polarization: -18.94 SS G_CDS: 0.39 Total: -18.55 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 5.08 Total: 19.37 kcal Atomic # 7 Polarization: 0.09 SS G_CDS: -2.09 Total: -2.00 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -3.13 Total: -16.21 kcal Atomic # 14 Polarization: -8.21 SS G_CDS: 2.62 Total: -5.59 kcal Total: -25.85 2.87 -22.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_12807986.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.234 kcal (2) G-P(sol) polarization free energy of solvation -25.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds