Wall clock time and date at job start Sun Mar 7 2021 04:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86296 * 109.47358 * 2 1 4 4 H 1.48504 * 109.47212 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47227 * 300.00129 * 3 2 1 6 6 H 1.48506 * 109.47349 * 60.00260 * 3 2 1 7 7 C 1.50706 * 109.47314 * 120.00075 * 2 1 3 8 8 C 1.38891 * 119.67728 * 245.00155 * 7 2 1 9 9 C 1.36472 * 120.61608 * 180.02562 * 8 7 2 10 10 C 1.40058 * 119.82933 * 359.97312 * 9 8 7 11 11 C 1.41594 * 133.38002 * 179.97438 * 10 9 8 12 12 C 1.35868 * 107.72811 * 180.02562 * 11 10 9 13 13 C 1.47064 * 125.42515 * 180.02562 * 12 11 10 14 14 O 1.21643 * 120.00235 * 23.10938 * 13 12 11 15 15 N 1.34777 * 119.99679 * 203.10778 * 13 12 11 16 16 C 1.46403 * 118.75270 * 6.28212 * 15 13 12 17 17 C 1.53919 * 109.06461 * 253.44738 * 16 15 13 18 18 Si 1.85191 * 107.12727 * 308.57862 * 17 16 15 19 19 C 1.87456 * 111.52416 * 168.31855 * 18 17 16 20 20 C 1.55680 * 100.84707 * 114.79424 * 19 18 17 21 21 C 1.53778 * 111.39995 * 27.99654 * 20 19 18 22 22 C 1.56392 * 109.77424 * 312.17501 * 21 20 19 23 23 C 1.85195 * 110.14316 * 43.93291 * 18 17 16 24 24 C 1.46393 * 118.75300 * 186.55331 * 15 13 12 25 25 N 1.38151 * 109.14555 * 359.97438 * 12 11 10 26 26 C 1.37483 * 108.79175 * 0.02562 * 25 12 11 27 27 C 1.37714 * 119.67224 * 64.73205 * 7 2 1 28 28 H 0.96706 * 113.99769 * 300.00145 * 1 2 3 29 29 H 1.09000 * 109.46983 * 239.99955 * 2 1 3 30 30 H 1.08007 * 119.69101 * 0.02562 * 8 7 2 31 31 H 1.08004 * 120.08539 * 180.02562 * 9 8 7 32 32 H 1.08001 * 126.14049 * 0.02562 * 11 10 9 33 33 H 1.08998 * 109.58907 * 13.20329 * 16 15 13 34 34 H 1.08997 * 109.58243 * 133.62672 * 16 15 13 35 35 H 1.09000 * 109.99743 * 189.12617 * 17 16 15 36 36 H 1.09005 * 109.83439 * 67.93866 * 17 16 15 37 37 H 1.08995 * 111.13810 * 232.69549 * 19 18 17 38 38 H 1.08997 * 111.13802 * 356.89891 * 19 18 17 39 39 H 1.08999 * 109.10400 * 267.48095 * 20 19 18 40 40 H 1.09005 * 109.09861 * 148.50833 * 20 19 18 41 41 H 1.09006 * 109.42351 * 192.07580 * 21 20 19 42 42 H 1.09001 * 109.41731 * 72.26772 * 21 20 19 43 43 H 1.09002 * 111.49202 * 281.94017 * 22 21 20 44 44 H 1.08997 * 111.49524 * 156.82968 * 22 21 20 45 45 H 1.09001 * 109.92369 * 196.56340 * 23 18 17 46 46 H 1.08996 * 109.92362 * 75.36946 * 23 18 17 47 47 H 1.08999 * 109.58653 * 226.36984 * 24 15 13 48 48 H 1.09002 * 109.58648 * 346.80098 * 24 15 13 49 49 H 0.97002 * 125.60197 * 179.97438 * 25 12 11 50 50 H 1.07996 * 120.10087 * 359.96766 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7564 0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5551 2.4565 1.2126 7 6 1.9313 -0.7104 1.2305 8 6 2.6414 -0.0025 2.1916 9 6 3.1056 -0.6267 3.3129 10 6 2.8650 -1.9938 3.4993 11 6 3.2032 -2.9098 4.5247 12 6 2.7044 -4.1244 4.1755 13 6 2.8322 -5.3578 4.9662 14 8 3.0282 -5.2942 6.1650 15 7 2.7322 -6.5587 4.3625 16 6 2.6358 -6.6070 2.9024 17 6 1.1928 -6.9664 2.5054 18 14 0.7292 -8.4881 3.4537 19 6 -1.1090 -8.8369 3.3385 20 6 -1.1033 -10.1829 2.5562 21 6 0.1895 -10.9753 2.8123 22 6 1.4279 -10.0343 2.6489 23 6 1.2829 -8.3357 5.2144 24 6 2.7179 -7.7648 5.1919 25 7 2.0572 -4.0159 2.9598 26 6 2.1442 -2.7141 2.5263 27 6 1.6771 -2.0540 1.3935 28 1 -0.3933 0.4418 0.7651 29 1 1.7922 -0.5138 -0.8900 30 1 2.8278 1.0519 2.0502 31 1 3.6564 -0.0678 4.0549 32 1 3.7581 -2.6837 5.4232 33 1 2.8941 -5.6331 2.4867 34 1 3.3182 -7.3641 2.5161 35 1 1.1392 -7.1650 1.4350 36 1 0.5225 -6.1474 2.7664 37 1 -1.5486 -8.9591 4.3283 38 1 -1.6225 -8.0573 2.7759 39 1 -1.1896 -9.9759 1.4896 40 1 -1.9575 -10.7822 2.8715 41 1 0.2600 -11.7948 2.0971 42 1 0.1723 -11.3793 3.8245 43 1 1.6653 -9.8654 1.5986 44 1 2.2920 -10.4131 3.1947 45 1 1.2805 -9.3161 5.6907 46 1 0.6218 -7.6578 5.7542 47 1 3.3991 -8.5050 4.7721 48 1 3.0274 -7.5142 6.2066 49 1 1.6147 -4.7395 2.4891 50 1 1.1198 -2.5948 0.6429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_13158378.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:29 Heat of formation + Delta-G solvation = -20.126166 kcal Electronic energy + Delta-G solvation = -30029.570202 eV Core-core repulsion = 26146.193981 eV Total energy + Delta-G solvation = -3883.376221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 358.163 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.96120 -40.93872 -38.99365 -37.69401 -36.86964 -36.17106 -33.50445 -32.80145 -31.35350 -30.53396 -30.23443 -29.71076 -26.97648 -25.12098 -24.81365 -24.21971 -23.54593 -22.40850 -21.95137 -21.04169 -20.72725 -18.94536 -18.65492 -18.10391 -17.26424 -16.92634 -16.49484 -16.18811 -16.03088 -15.89078 -15.68971 -15.65338 -15.42262 -15.11945 -14.90013 -14.78713 -14.43961 -14.34401 -14.23115 -14.20456 -13.91856 -13.63051 -13.51263 -13.18207 -12.79307 -12.60653 -12.51199 -12.48084 -12.39131 -12.14565 -12.12513 -11.99621 -11.98213 -11.48472 -11.41799 -11.36991 -10.98043 -10.54618 -10.49717 -10.38244 -10.31937 -9.90688 -9.33604 -8.84925 -0.37984 0.49082 0.90840 1.22717 1.52280 1.59219 1.62337 1.68957 1.74867 1.79404 1.90179 1.98069 2.16448 2.56467 2.74607 3.22676 3.53354 3.69954 3.74549 3.87768 3.93660 3.98654 4.09706 4.12589 4.16772 4.21785 4.25375 4.28158 4.37322 4.40759 4.43937 4.51047 4.61466 4.65930 4.67699 4.70263 4.75676 4.85011 4.90116 4.97116 5.07406 5.10441 5.12613 5.19162 5.26758 5.29326 5.36012 5.38597 5.42927 5.50827 5.51128 5.55436 5.55661 5.94823 6.05128 6.31436 6.73623 6.82690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.075 4.075 3 Si 0.983 3.017 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.089 4.089 8 C -0.159 4.159 9 C -0.060 4.060 10 C -0.133 4.133 11 C -0.121 4.121 12 C 0.009 3.991 13 C 0.577 3.423 14 O -0.561 6.561 15 N -0.603 5.603 16 C 0.082 3.918 17 C -0.452 4.452 18 Si 1.070 2.930 19 C -0.426 4.426 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.406 4.406 23 C -0.444 4.444 24 C 0.114 3.886 25 N -0.569 5.569 26 C 0.101 3.899 27 C -0.103 4.103 28 H 0.389 0.611 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.107 0.893 48 H 0.075 0.925 49 H 0.434 0.566 50 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 -2.161 -5.024 5.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.091 4.091 8 C -0.177 4.177 9 C -0.078 4.078 10 C -0.137 4.137 11 C -0.148 4.148 12 C -0.100 4.100 13 C 0.365 3.635 14 O -0.439 6.439 15 N -0.335 5.335 16 C -0.039 4.039 17 C -0.538 4.538 18 Si 1.259 2.741 19 C -0.511 4.511 20 C -0.161 4.161 21 C -0.166 4.166 22 C -0.492 4.492 23 C -0.529 4.529 24 C -0.008 4.008 25 N -0.182 5.182 26 C -0.010 4.010 27 C -0.124 4.124 28 H 0.238 0.762 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.161 0.839 32 H 0.172 0.828 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.104 0.896 45 H 0.119 0.881 46 H 0.083 0.917 47 H 0.125 0.875 48 H 0.094 0.906 49 H 0.282 0.718 50 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.388 -1.806 -4.952 5.285 hybrid contribution -0.656 -0.605 0.778 1.184 sum -0.267 -2.410 -4.173 4.827 Atomic orbital electron populations 1.86487 1.17347 1.81915 1.50117 1.25008 0.84917 1.10591 0.98088 0.85193 0.79685 0.74601 0.79661 1.18138 1.20409 1.17685 1.20159 0.98479 0.93641 0.96850 1.20729 1.01574 1.00413 0.95010 1.20578 0.97801 0.91808 0.97625 1.18406 1.04330 0.94950 0.96017 1.21085 1.03232 0.90404 1.00056 1.19982 1.05373 0.95618 0.89070 1.17598 0.76509 0.83160 0.86226 1.90830 1.50602 1.86970 1.15522 1.48128 1.71521 1.05650 1.08222 1.22122 0.98498 1.05596 0.77711 1.26833 0.98736 1.16436 1.11763 0.78466 0.65684 0.65536 0.64389 1.26706 1.21167 1.00492 1.02695 1.21886 0.97810 0.95736 1.00625 1.22073 0.93553 0.98927 1.02005 1.26728 1.00509 1.14230 1.07776 1.26907 0.99933 1.04376 1.21667 1.21504 0.97818 0.85197 0.96232 1.42889 1.48333 1.09257 1.17765 1.18598 1.00846 0.84612 0.96908 1.20034 1.02388 0.94008 0.95955 0.76192 0.85333 0.84773 0.83873 0.82788 0.88797 0.86612 0.85536 0.90392 0.91172 0.90150 0.91516 0.92763 0.91749 0.91846 0.89200 0.89560 0.88148 0.91717 0.87543 0.90646 0.71822 0.83981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.78 12.82 -148.98 -1.91 -1.13 16 2 C -0.08 0.22 2.79 71.24 0.20 0.41 16 3 Si 0.98 -2.33 25.11 68.60 1.72 -0.61 16 4 H -0.26 0.28 7.11 99.48 0.71 0.99 16 5 H -0.28 -0.38 7.11 99.48 0.71 0.33 16 6 H -0.25 0.55 7.03 99.48 0.70 1.25 16 7 C -0.09 0.04 5.36 -19.83 -0.11 -0.07 16 8 C -0.16 -0.04 8.59 22.01 0.19 0.15 16 9 C -0.06 -0.12 10.06 22.30 0.22 0.11 16 10 C -0.13 -0.65 6.16 -21.36 -0.13 -0.78 16 11 C -0.12 -0.78 10.61 22.55 0.24 -0.55 16 12 C 0.01 0.05 6.22 39.91 0.25 0.30 16 13 C 0.58 4.16 7.56 86.56 0.65 4.82 16 14 O -0.56 -8.44 16.18 -4.17 -0.07 -8.50 16 15 N -0.60 0.05 2.56 -821.95 -2.10 -2.05 16 16 C 0.08 -0.54 5.24 86.71 0.45 -0.09 16 17 C -0.45 4.20 4.45 72.29 0.32 4.52 16 18 Si 1.07 -8.49 10.74 68.60 0.74 -7.75 16 19 C -0.43 1.64 5.84 72.91 0.43 2.06 16 20 C -0.12 0.37 6.09 31.78 0.19 0.56 16 21 C -0.13 0.52 5.97 32.04 0.19 0.71 16 22 C -0.41 3.01 5.95 73.16 0.43 3.45 16 23 C -0.44 1.44 5.21 72.48 0.38 1.82 16 24 C 0.11 -0.13 5.96 86.89 0.52 0.39 16 25 N -0.57 -0.42 4.74 -177.18 -0.84 -1.26 16 26 C 0.10 0.28 7.25 39.13 0.28 0.56 16 27 C -0.10 -0.02 9.68 22.37 0.22 0.20 16 28 H 0.39 -2.79 8.70 -74.05 -0.64 -3.44 16 29 H 0.13 -0.65 7.96 -2.39 -0.02 -0.67 16 30 H 0.13 -0.37 4.80 -2.91 -0.01 -0.38 16 31 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 32 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.09 -0.54 4.41 -2.39 -0.01 -0.55 16 34 H 0.12 -1.28 8.08 -2.39 -0.02 -1.29 16 35 H 0.13 -1.72 7.97 -2.39 -0.02 -1.74 16 36 H 0.08 -0.64 6.72 -2.38 -0.02 -0.65 16 37 H 0.07 -0.15 8.03 -2.39 -0.02 -0.17 16 38 H 0.08 -0.34 8.03 -2.39 -0.02 -0.36 16 39 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 40 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 41 H 0.06 -0.22 8.14 -2.38 -0.02 -0.24 16 42 H 0.06 -0.25 8.14 -2.39 -0.02 -0.27 16 43 H 0.09 -0.79 8.04 -2.39 -0.02 -0.81 16 44 H 0.09 -0.70 8.04 -2.39 -0.02 -0.72 16 45 H 0.10 -0.49 7.97 -2.39 -0.02 -0.51 16 46 H 0.06 0.04 7.97 -2.39 -0.02 0.02 16 47 H 0.11 -0.70 8.08 -2.39 -0.02 -0.72 16 48 H 0.08 0.33 6.87 -2.39 -0.02 0.32 16 49 H 0.43 -1.83 4.31 -92.71 -0.40 -2.23 16 50 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 Total: 0.00 -17.97 385.11 3.15 -14.83 By element: Atomic # 1 Polarization: -12.77 SS G_CDS: 0.67 Total: -12.10 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 4.93 Total: 18.58 kcal Atomic # 7 Polarization: -0.37 SS G_CDS: -2.94 Total: -3.31 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -1.98 Total: -9.63 kcal Atomic # 14 Polarization: -10.82 SS G_CDS: 2.46 Total: -8.36 kcal Total: -17.97 3.15 -14.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_13158378.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.299 kcal (2) G-P(sol) polarization free energy of solvation -17.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds