Wall clock time and date at job start Sun Mar 7 2021 04:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86302 * 109.46753 * 2 1 4 4 H 1.48490 * 109.47327 * 59.99837 * 3 2 1 5 5 H 1.48505 * 109.47020 * 180.02562 * 3 2 1 6 6 H 1.48502 * 109.47172 * 299.99730 * 3 2 1 7 7 C 1.50693 * 109.47182 * 240.00016 * 2 1 3 8 8 C 1.34706 * 125.66362 * 299.99619 * 7 2 1 9 9 C 1.40970 * 107.02921 * 180.02562 * 8 7 2 10 10 C 1.35938 * 106.74384 * 0.02562 * 9 8 7 11 11 C 1.47810 * 125.93365 * 179.97438 * 10 9 8 12 12 C 1.39180 * 120.00178 * 180.23187 * 11 10 9 13 13 C 1.39463 * 119.75702 * 180.24944 * 12 11 10 14 14 C 1.47559 * 120.12431 * 179.76651 * 13 12 11 15 15 O 1.21580 * 120.00398 * 232.69777 * 14 13 12 16 16 N 1.34779 * 119.99676 * 52.68958 * 14 13 12 17 17 C 1.46398 * 118.75431 * 174.48576 * 16 14 13 18 18 C 1.54457 * 108.76683 * 106.56346 * 17 16 14 19 19 Si 1.85198 * 107.11492 * 51.56304 * 18 17 16 20 20 C 1.87780 * 111.35947 * 191.89879 * 19 18 17 21 21 C 1.56395 * 98.97699 * 221.49275 * 20 19 18 22 22 C 1.53777 * 109.77470 * 39.37771 * 21 20 19 23 23 C 1.55681 * 111.39783 * 312.17535 * 22 21 20 24 24 C 1.85201 * 110.13643 * 315.95102 * 19 18 17 25 25 C 1.46400 * 118.75709 * 354.46788 * 16 14 13 26 26 C 1.40213 * 119.75680 * 359.49131 * 13 12 11 27 27 O 1.35645 * 120.00154 * 180.29733 * 26 13 12 28 28 C 1.38823 * 119.99432 * 0.27817 * 26 13 12 29 29 C 1.37765 * 120.24911 * 359.97438 * 28 26 13 30 30 O 1.34340 * 125.66742 * 120.28329 * 7 2 1 31 31 H 0.96700 * 114.00115 * 300.00184 * 1 2 3 32 32 H 1.08998 * 109.47031 * 119.99842 * 2 1 3 33 33 H 1.08005 * 126.48774 * 0.04194 * 8 7 2 34 34 H 1.08000 * 126.62960 * 179.97438 * 9 8 7 35 35 H 1.07994 * 120.12076 * 0.03429 * 12 11 10 36 36 H 1.09000 * 109.58672 * 346.78249 * 17 16 14 37 37 H 1.09000 * 109.70572 * 226.41593 * 17 16 14 38 38 H 1.08996 * 109.92736 * 292.15458 * 18 17 16 39 39 H 1.09008 * 109.92510 * 170.96084 * 18 17 16 40 40 H 1.08996 * 111.49195 * 104.04782 * 20 19 18 41 41 H 1.08997 * 111.49398 * 338.93721 * 20 19 18 42 42 H 1.09002 * 109.42047 * 279.28151 * 21 20 19 43 43 H 1.09001 * 109.41479 * 159.47193 * 21 20 19 44 44 H 1.09000 * 109.10227 * 72.68847 * 22 21 20 45 45 H 1.09001 * 109.09983 * 191.66332 * 22 21 20 46 46 H 1.09001 * 111.14385 * 145.90125 * 23 22 21 47 47 H 1.09006 * 111.14050 * 270.10774 * 23 22 21 48 48 H 1.09000 * 109.91907 * 163.44387 * 24 19 18 49 49 H 1.08993 * 109.92371 * 284.64225 * 24 19 18 50 50 H 1.08992 * 109.58573 * 13.21955 * 25 16 14 51 51 H 1.09005 * 109.58547 * 133.64467 * 25 16 14 52 52 H 0.96700 * 114.00438 * 90.00613 * 27 26 13 53 53 H 1.08006 * 119.87737 * 179.97438 * 28 26 13 54 54 H 1.07994 * 119.88017 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 1 1.5549 2.4565 1.2124 5 1 3.5349 1.7566 -0.0006 6 1 1.5549 2.4565 -1.2125 7 6 1.9313 -0.7104 -1.2304 8 6 1.6773 -1.9926 -1.5557 9 6 2.3354 -2.2471 -2.7761 10 6 2.9616 -1.0940 -3.1313 11 6 3.7791 -0.8894 -4.3455 12 6 4.3706 0.3473 -4.5861 13 6 5.1367 0.5362 -5.7360 14 6 5.7631 1.8456 -6.0017 15 8 5.5845 2.3997 -7.0690 16 7 6.5333 2.4273 -5.0610 17 6 7.2399 3.6650 -5.3959 18 6 6.5396 4.8446 -4.6859 19 14 6.3871 4.3909 -2.8969 20 6 5.2416 5.5688 -1.9878 21 6 6.0627 5.7374 -0.6675 22 6 7.5632 5.8170 -0.9945 23 6 7.9919 4.6852 -1.9738 24 6 5.8200 2.6357 -2.7304 25 6 6.6314 1.7978 -3.7429 26 6 5.3142 -0.5242 -6.6360 27 8 6.0634 -0.3477 -7.7529 28 6 4.7236 -1.7549 -6.3835 29 6 3.9626 -1.9401 -5.2502 30 8 2.7113 -0.1717 -2.1823 31 1 -0.3933 0.4417 0.7650 32 1 1.7923 -0.5138 0.8900 33 1 1.0818 -2.6931 -0.9889 34 1 2.3416 -3.1785 -3.3228 35 1 4.2339 1.1586 -3.8866 36 1 7.2138 3.8203 -6.4744 37 1 8.2750 3.5994 -5.0609 38 1 5.5502 5.0019 -5.1150 39 1 7.1388 5.7493 -4.7899 40 1 4.2695 5.1138 -1.7982 41 1 5.1395 6.5155 -2.5183 42 1 5.8788 4.8840 -0.0148 43 1 5.7528 6.6522 -0.1623 44 1 7.7781 6.7835 -1.4503 45 1 8.1349 5.7252 -0.0710 46 1 8.7770 5.0259 -2.6489 47 1 8.3027 3.7925 -1.4310 48 1 6.0082 2.2791 -1.7177 49 1 4.7564 2.5658 -2.9582 50 1 6.2255 0.7874 -3.7894 51 1 7.6757 1.7605 -3.4326 52 1 7.0011 -0.5518 -7.6340 53 1 4.8613 -2.5704 -7.0782 54 1 3.5062 -2.9001 -5.0595 RHF calculation, no. of doubly occupied orbitals= 72 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_13259648.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:44:59 Heat of formation + Delta-G solvation = -87.131416 kcal Electronic energy + Delta-G solvation = -37137.592962 eV Core-core repulsion = 32551.146561 eV Total energy + Delta-G solvation = -4586.446400 eV No. of doubly occupied orbitals = 72 Molecular weight (most abundant/longest-lived isotopes) = 401.166 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.70886 -41.90121 -40.01116 -38.18499 -37.83455 -37.31530 -36.19774 -34.28876 -33.43641 -32.79427 -31.78724 -30.58711 -29.97576 -29.74761 -26.36801 -25.71405 -24.86593 -24.25590 -23.88503 -23.37238 -22.50832 -21.42695 -21.06666 -20.53930 -19.48560 -18.86902 -18.69812 -18.13940 -17.33478 -17.18822 -17.07078 -16.59889 -16.25316 -16.11229 -16.02208 -15.94417 -15.59158 -15.48864 -15.05925 -14.68443 -14.55967 -14.54474 -14.31398 -14.28343 -14.18696 -14.08426 -13.94612 -13.62453 -13.60461 -13.36722 -13.14529 -13.04616 -12.73088 -12.65080 -12.61782 -12.44230 -12.18855 -12.18468 -12.06589 -12.00554 -11.86988 -11.38493 -11.08822 -11.03774 -10.64148 -10.61402 -10.47395 -10.34780 -10.34104 -10.08969 -9.81032 -8.90128 -0.55071 -0.15849 0.74566 1.01811 1.27314 1.38937 1.45775 1.62018 1.67243 1.70652 1.73850 1.80143 1.90201 1.90877 2.48474 2.56023 2.99461 3.17334 3.30225 3.62039 3.70852 3.80021 3.95336 3.98789 4.03276 4.06845 4.08060 4.11199 4.18403 4.20968 4.27028 4.34166 4.38539 4.41295 4.50699 4.60923 4.62658 4.63783 4.64250 4.70931 4.77870 4.81510 4.88129 4.90746 5.03310 5.03904 5.09323 5.10830 5.16279 5.18757 5.24380 5.27448 5.32761 5.46036 5.46904 5.49072 5.51252 5.53414 6.00998 6.12033 6.65053 6.73056 6.95840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.559 6.559 2 C -0.035 4.035 3 Si 0.951 3.049 4 H -0.231 1.231 5 H -0.243 1.243 6 H -0.285 1.285 7 C -0.025 4.025 8 C -0.176 4.176 9 C -0.183 4.183 10 C 0.016 3.984 11 C -0.037 4.037 12 C -0.069 4.069 13 C -0.171 4.171 14 C 0.556 3.444 15 O -0.566 6.566 16 N -0.602 5.602 17 C 0.116 3.884 18 C -0.439 4.439 19 Si 1.041 2.959 20 C -0.425 4.425 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.397 4.397 24 C -0.444 4.444 25 C 0.100 3.900 26 C 0.153 3.847 27 O -0.500 6.500 28 C -0.137 4.137 29 C -0.050 4.050 30 O -0.185 6.185 31 H 0.408 0.592 32 H 0.128 0.872 33 H 0.169 0.831 34 H 0.180 0.820 35 H 0.140 0.860 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.111 0.889 49 H 0.068 0.932 50 H 0.094 0.906 51 H 0.111 0.889 52 H 0.411 0.589 53 H 0.168 0.832 54 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -4.682 8.293 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.370 6.370 2 C -0.146 4.146 3 Si 0.774 3.226 4 H -0.153 1.153 5 H -0.166 1.166 6 H -0.210 1.210 7 C -0.075 4.075 8 C -0.195 4.195 9 C -0.202 4.202 10 C -0.034 4.034 11 C -0.037 4.037 12 C -0.087 4.087 13 C -0.174 4.174 14 C 0.344 3.656 15 O -0.445 6.445 16 N -0.334 5.334 17 C -0.005 4.005 18 C -0.524 4.524 19 Si 1.232 2.768 20 C -0.511 4.511 21 C -0.163 4.163 22 C -0.160 4.160 23 C -0.485 4.485 24 C -0.530 4.530 25 C -0.021 4.021 26 C 0.107 3.893 27 O -0.314 6.314 28 C -0.155 4.155 29 C -0.068 4.068 30 O -0.084 6.084 31 H 0.260 0.740 32 H 0.146 0.854 33 H 0.186 0.814 34 H 0.197 0.803 35 H 0.157 0.843 36 H 0.089 0.911 37 H 0.127 0.873 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.129 0.871 49 H 0.086 0.914 50 H 0.112 0.888 51 H 0.129 0.871 52 H 0.272 0.728 53 H 0.186 0.814 54 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.514 -3.380 6.923 8.468 hybrid contribution -0.352 0.177 0.337 0.518 sum 3.162 -3.203 7.260 8.542 Atomic orbital electron populations 1.86421 1.16482 1.82322 1.51799 1.23768 0.86060 1.10854 0.93879 0.85636 0.81266 0.74934 0.80800 1.15316 1.16582 1.21027 1.21894 0.98627 0.94039 0.92894 1.21788 1.03363 0.96120 0.98201 1.22192 1.00603 0.99309 0.98069 1.20464 1.03599 0.88578 0.90726 1.17737 0.98773 0.94810 0.92391 1.21492 0.94663 0.97548 0.94998 1.20160 1.05251 0.94937 0.97074 1.18514 0.78541 0.84932 0.83577 1.90798 1.61545 1.65258 1.26921 1.48160 1.46609 1.25555 1.13119 1.21441 0.96236 0.81714 1.01153 1.26840 1.03452 1.01868 1.20261 0.78936 0.68076 0.65370 0.64395 1.26831 1.06915 1.11261 1.06046 1.22082 0.94563 1.02372 0.97310 1.21869 0.94997 0.99113 1.00002 1.26453 1.13653 1.01985 1.06359 1.26887 1.03829 1.19151 1.03122 1.21920 1.02927 0.97375 0.79857 1.18735 0.94343 0.91674 0.84557 1.84788 1.25089 1.90558 1.30965 1.21558 0.98967 0.96643 0.98337 1.21407 0.95207 0.98917 0.91254 1.83894 1.55853 1.40118 1.28486 0.73977 0.85446 0.81378 0.80258 0.84257 0.91123 0.87305 0.92322 0.88094 0.91113 0.90652 0.91227 0.92040 0.92081 0.91485 0.89317 0.89115 0.87057 0.91377 0.88769 0.87095 0.72827 0.81408 0.81333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.94 12.84 -148.98 -1.91 -0.98 16 2 C -0.04 0.08 2.97 71.23 0.21 0.29 16 3 Si 0.95 -0.74 27.38 68.60 1.88 1.14 16 4 H -0.23 0.78 7.11 99.48 0.71 1.48 16 5 H -0.24 0.14 7.11 99.48 0.71 0.84 16 6 H -0.28 -1.75 7.11 99.48 0.71 -1.05 16 7 C -0.03 -0.08 6.25 24.87 0.16 0.07 16 8 C -0.18 -0.31 10.77 22.13 0.24 -0.07 16 9 C -0.18 -0.13 10.26 22.41 0.23 0.10 16 10 C 0.02 0.06 7.03 24.27 0.17 0.23 16 11 C -0.04 -0.09 5.87 -20.13 -0.12 -0.21 16 12 C -0.07 -0.32 7.02 22.79 0.16 -0.16 16 13 C -0.17 -1.13 4.85 -20.04 -0.10 -1.23 16 14 C 0.56 5.62 6.82 86.70 0.59 6.21 16 15 O -0.57 -10.92 15.99 0.92 0.01 -10.90 16 16 N -0.60 -1.80 2.55 -820.33 -2.09 -3.89 16 17 C 0.12 0.19 5.90 86.89 0.51 0.71 16 18 C -0.44 -0.21 5.21 72.48 0.38 0.17 16 19 Si 1.04 -3.72 10.74 68.60 0.74 -2.99 16 20 C -0.43 0.03 5.94 73.16 0.43 0.46 16 21 C -0.13 0.15 5.97 32.04 0.19 0.34 16 22 C -0.12 0.32 6.09 31.78 0.19 0.51 16 23 C -0.40 2.08 5.84 72.91 0.43 2.50 16 24 C -0.44 1.22 4.85 72.48 0.35 1.58 16 25 C 0.10 -0.27 5.23 86.89 0.45 0.19 16 26 C 0.15 0.67 6.70 22.89 0.15 0.82 16 27 O -0.50 -2.51 12.64 -84.70 -1.07 -3.58 16 28 C -0.14 0.16 9.96 22.30 0.22 0.38 16 29 C -0.05 0.10 9.54 22.55 0.22 0.32 16 30 O -0.19 -1.09 8.78 -6.54 -0.06 -1.15 16 31 H 0.41 -4.74 8.74 -74.06 -0.65 -5.39 16 32 H 0.13 -1.12 7.96 -2.39 -0.02 -1.14 16 33 H 0.17 -0.30 8.06 -2.91 -0.02 -0.32 16 34 H 0.18 -0.98 7.25 -2.91 -0.02 -1.00 16 35 H 0.14 0.63 4.84 -2.91 -0.01 0.62 16 36 H 0.07 0.51 6.96 -2.39 -0.02 0.49 16 37 H 0.11 -0.52 8.08 -2.39 -0.02 -0.54 16 38 H 0.06 0.32 7.97 -2.39 -0.02 0.30 16 39 H 0.10 -0.21 7.97 -2.38 -0.02 -0.23 16 40 H 0.07 0.06 8.04 -2.39 -0.02 0.04 16 41 H 0.07 0.06 8.04 -2.39 -0.02 0.04 16 42 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 44 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 45 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.09 -0.56 8.03 -2.39 -0.02 -0.58 16 47 H 0.09 -0.64 8.03 -2.38 -0.02 -0.66 16 48 H 0.11 -0.66 7.97 -2.39 -0.02 -0.68 16 49 H 0.07 0.03 6.09 -2.39 -0.01 0.02 16 50 H 0.09 -0.19 4.66 -2.39 -0.01 -0.20 16 51 H 0.11 -0.91 8.08 -2.38 -0.02 -0.93 16 52 H 0.41 -1.99 9.06 -74.06 -0.67 -2.66 16 53 H 0.17 -1.01 8.06 -2.91 -0.02 -1.04 16 54 H 0.17 -1.39 6.96 -2.91 -0.02 -1.41 16 Total: 0.00 -26.71 428.76 2.96 -23.75 By element: Atomic # 1 Polarization: -14.99 SS G_CDS: 0.39 Total: -14.60 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 5.07 Total: 13.20 kcal Atomic # 7 Polarization: -1.80 SS G_CDS: -2.09 Total: -3.89 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -3.03 Total: -16.61 kcal Atomic # 14 Polarization: -4.46 SS G_CDS: 2.62 Total: -1.85 kcal Total: -26.71 2.96 -23.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_13259648.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.383 kcal (2) G-P(sol) polarization free energy of solvation -26.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds