Wall clock time and date at job start Sun Mar 7 2021 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36421 * 125.79864 * 2 1 4 4 C 1.47377 * 127.19051 * 0.03384 * 3 2 1 5 5 O 1.21609 * 120.00102 * 309.93091 * 4 3 2 6 6 N 1.34773 * 119.99630 * 129.93660 * 4 3 2 7 7 C 1.46404 * 118.75077 * 184.08284 * 6 4 3 8 8 C 1.53920 * 109.06288 * 253.44471 * 7 6 4 9 9 Si 1.85192 * 107.12360 * 308.57490 * 8 7 6 10 10 C 1.87453 * 111.52278 * 168.31788 * 9 8 7 11 11 C 1.55682 * 100.85186 * 114.79738 * 10 9 8 12 12 C 1.53786 * 111.39824 * 27.99586 * 11 10 9 13 13 C 1.56395 * 109.76780 * 312.17692 * 12 11 10 14 14 C 1.85197 * 110.14352 * 43.93477 * 9 8 7 15 15 C 1.46392 * 118.75875 * 4.34373 * 6 4 3 16 16 C 1.47021 * 105.61384 * 179.80004 * 3 2 1 17 17 C 1.34179 * 105.95308 * 0.38840 * 16 3 2 18 18 C 1.50701 * 125.43624 * 179.87569 * 17 16 3 19 19 O 1.42899 * 109.47509 * 64.71333 * 18 17 16 20 20 Si 1.86305 * 109.46834 * 184.71514 * 18 17 16 21 21 H 1.48495 * 109.46934 * 299.99312 * 20 18 17 22 22 H 1.48492 * 109.47197 * 59.99894 * 20 18 17 23 23 H 1.48505 * 109.46934 * 179.97438 * 20 18 17 24 24 O 1.33650 * 125.80143 * 180.02562 * 2 1 3 25 25 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47209 * 299.98124 * 1 2 3 27 27 H 1.09000 * 109.47504 * 59.98831 * 1 2 3 28 28 H 1.08994 * 109.58961 * 13.19431 * 7 6 4 29 29 H 1.09000 * 109.58352 * 133.62456 * 7 6 4 30 30 H 1.08999 * 110.00155 * 189.12518 * 8 7 6 31 31 H 1.08995 * 109.83905 * 67.93150 * 8 7 6 32 32 H 1.09004 * 111.14503 * 232.69047 * 10 9 8 33 33 H 1.09002 * 111.14343 * 356.89498 * 10 9 8 34 34 H 1.08995 * 109.10568 * 267.48708 * 11 10 9 35 35 H 1.09004 * 109.11055 * 148.50754 * 11 10 9 36 36 H 1.09001 * 109.42185 * 192.08351 * 12 11 10 37 37 H 1.08996 * 109.41980 * 72.26403 * 12 11 10 38 38 H 1.08997 * 111.49738 * 281.93692 * 13 12 11 39 39 H 1.09007 * 111.49104 * 156.82709 * 13 12 11 40 40 H 1.09006 * 109.92519 * 196.56103 * 14 9 8 41 41 H 1.09004 * 109.92610 * 75.36980 * 14 9 8 42 42 H 1.08994 * 109.59347 * 226.37839 * 15 6 4 43 43 H 1.09000 * 109.58933 * 346.80781 * 15 6 4 44 44 H 1.08002 * 127.02441 * 180.25984 * 16 3 2 45 45 H 1.09001 * 109.47114 * 304.71117 * 18 17 16 46 46 H 0.96701 * 113.99998 * 60.00424 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8738 2.5158 0.0007 5 8 1.0491 2.8998 -0.8064 6 7 2.3936 3.3790 0.8957 7 6 1.8807 4.7498 0.9319 8 6 2.9304 5.6956 0.3215 9 14 4.5373 5.3505 1.1750 10 6 5.9735 6.1751 0.2968 11 6 6.4301 7.1977 1.3782 12 6 6.0993 6.7008 2.7954 13 6 4.6188 6.1995 2.8480 14 6 4.7961 3.5235 1.3328 15 6 3.4537 2.9121 1.7909 16 6 3.6849 0.5992 0.0049 17 6 3.5859 -0.7389 -0.0014 18 6 4.7460 -1.7009 -0.0022 19 8 5.4764 -1.5675 1.2188 20 14 4.1069 -3.4441 -0.1563 21 1 3.2136 -3.7470 0.9906 22 1 3.3480 -3.5828 -1.4251 23 1 5.2501 -4.3920 -0.1577 24 8 2.2888 -1.0840 -0.0005 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3634 0.5140 -0.8899 28 1 0.9587 4.8103 0.3538 29 1 1.6868 5.0401 1.9645 30 1 2.6379 6.7327 0.4854 31 1 3.0276 5.5004 -0.7464 32 1 6.7636 5.4575 0.0758 33 1 5.6414 6.6826 -0.6090 34 1 5.9249 8.1481 1.2064 35 1 7.5066 7.3481 1.2951 36 1 6.2310 7.5172 3.5056 37 1 6.7688 5.8818 3.0578 38 1 3.9172 7.0315 2.9083 39 1 4.4655 5.4918 3.6629 40 1 5.5690 3.3205 2.0742 41 1 5.0854 3.1046 0.3690 42 1 3.2368 3.2293 2.8109 43 1 3.5145 1.8246 1.7494 44 1 4.5928 1.1841 0.0102 45 1 5.4017 -1.4786 -0.8440 46 1 4.9541 -1.7511 2.0116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_13308374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:33 Heat of formation + Delta-G solvation = -83.864158 kcal Electronic energy + Delta-G solvation = -26391.316342 eV Core-core repulsion = 22792.135994 eV Total energy + Delta-G solvation = -3599.180348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.151 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.81278 -40.92176 -37.98311 -37.35217 -36.14231 -34.46707 -33.22029 -32.29234 -30.56848 -29.67999 -29.31527 -26.02239 -24.98617 -24.56691 -24.11941 -23.10867 -21.73383 -20.98551 -19.72395 -18.77997 -18.18611 -17.73906 -17.15682 -16.84446 -16.29028 -16.02611 -15.86203 -15.78610 -15.58619 -15.08480 -14.86728 -14.59081 -14.33614 -14.20501 -14.13275 -14.01640 -13.91647 -13.68538 -13.43959 -13.35827 -12.91457 -12.77495 -12.62415 -12.51283 -12.31917 -12.23220 -12.11800 -12.06050 -11.93881 -11.35066 -11.23567 -10.89044 -10.57168 -10.43609 -10.28757 -10.22566 -9.77608 -9.56233 0.32232 0.88285 1.07181 1.37437 1.46774 1.67894 1.74939 1.79641 1.84956 1.91840 1.93826 2.05063 2.65056 3.24978 3.46233 3.54077 3.82642 4.07316 4.10533 4.13726 4.15031 4.19287 4.29429 4.37178 4.40858 4.44460 4.44905 4.50676 4.60574 4.64106 4.68298 4.70886 4.71267 4.77165 4.86574 5.01755 5.08065 5.12355 5.13831 5.19057 5.21550 5.31605 5.38444 5.39031 5.53178 5.57875 5.58743 5.90123 6.23545 6.59152 7.04300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.065 3.935 3 C -0.259 4.259 4 C 0.585 3.415 5 O -0.577 6.577 6 N -0.600 5.600 7 C 0.116 3.884 8 C -0.443 4.443 9 Si 1.055 2.945 10 C -0.423 4.423 11 C -0.124 4.124 12 C -0.125 4.125 13 C -0.405 4.405 14 C -0.432 4.432 15 C 0.103 3.897 16 C -0.145 4.145 17 C -0.059 4.059 18 C -0.031 4.031 19 O -0.535 6.535 20 Si 0.986 3.014 21 H -0.258 1.258 22 H -0.270 1.270 23 H -0.253 1.253 24 O -0.179 6.179 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.175 0.825 45 H 0.152 0.848 46 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -1.280 4.920 5.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.013 3.987 3 C -0.263 4.263 4 C 0.374 3.626 5 O -0.458 6.458 6 N -0.331 5.331 7 C -0.006 4.006 8 C -0.527 4.527 9 Si 1.245 2.755 10 C -0.508 4.508 11 C -0.161 4.161 12 C -0.162 4.162 13 C -0.491 4.491 14 C -0.519 4.519 15 C -0.019 4.019 16 C -0.164 4.164 17 C -0.107 4.107 18 C -0.141 4.141 19 O -0.342 6.342 20 Si 0.809 3.191 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.177 1.177 24 O -0.076 6.076 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.130 0.870 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.192 0.808 45 H 0.170 0.830 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.755 -2.062 4.039 4.863 hybrid contribution -0.221 0.874 -0.106 0.907 sum 1.534 -1.188 3.933 4.386 Atomic orbital electron populations 1.20597 0.82811 1.05605 1.04877 1.23025 0.94628 0.82807 0.98262 1.21169 0.94691 0.93426 1.17011 1.17669 0.80086 0.84758 0.80107 1.90770 1.36016 1.79250 1.39764 1.48090 1.38169 1.11272 1.35605 1.21304 0.97363 0.79147 1.02752 1.26796 1.16237 1.02967 1.06716 0.78735 0.64050 0.65983 0.66713 1.26675 1.14966 1.06073 1.03107 1.21894 1.01227 0.98978 0.94017 1.22054 0.96623 1.01370 0.96202 1.26702 0.97988 1.07700 1.16743 1.26714 0.99711 1.19872 1.05580 1.21861 0.85067 1.01399 0.93529 1.22793 0.96102 0.93341 1.04198 1.23057 0.82836 0.96113 1.08739 1.24393 0.91012 1.06442 0.92278 1.86554 1.39293 1.92999 1.15365 0.85097 0.78907 0.74169 0.80886 1.18196 1.19462 1.17715 1.83670 1.16994 1.35102 1.71863 0.88220 0.88222 0.89120 0.91077 0.87864 0.88458 0.92137 0.90387 0.91112 0.92326 0.92413 0.91911 0.91048 0.90191 0.89076 0.87020 0.90453 0.88133 0.88536 0.80764 0.83049 0.75627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.02 10.09 71.24 0.72 0.70 16 2 C 0.07 0.28 7.37 25.26 0.19 0.47 16 3 C -0.26 -1.40 5.11 -18.99 -0.10 -1.50 16 4 C 0.58 4.79 7.30 86.65 0.63 5.43 16 5 O -0.58 -9.12 16.30 -4.06 -0.07 -9.18 16 6 N -0.60 -1.09 2.56 -821.63 -2.10 -3.19 16 7 C 0.12 0.10 5.87 86.71 0.51 0.60 16 8 C -0.44 0.34 5.19 72.29 0.38 0.72 16 9 Si 1.06 -5.57 10.74 68.60 0.74 -4.84 16 10 C -0.42 0.70 5.84 72.91 0.43 1.13 16 11 C -0.12 0.14 6.10 31.78 0.19 0.33 16 12 C -0.12 0.38 5.97 32.04 0.19 0.57 16 13 C -0.40 2.15 5.94 73.16 0.43 2.58 16 14 C -0.43 2.51 4.92 72.48 0.36 2.86 16 15 C 0.10 -0.41 5.40 86.89 0.47 0.06 16 16 C -0.15 -0.21 8.63 23.65 0.20 -0.01 16 17 C -0.06 -0.04 6.18 24.76 0.15 0.11 16 18 C -0.03 0.11 2.97 71.24 0.21 0.32 16 19 O -0.53 2.27 12.88 -148.98 -1.92 0.35 16 20 Si 0.99 -1.98 27.38 68.60 1.88 -0.10 16 21 H -0.26 0.12 7.11 99.48 0.71 0.83 16 22 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 23 H -0.25 0.17 7.11 99.48 0.71 0.88 16 24 O -0.18 -0.61 8.90 4.45 0.04 -0.57 16 25 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 26 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.07 0.42 6.94 -2.39 -0.02 0.41 16 29 H 0.10 -0.48 8.08 -2.39 -0.02 -0.50 16 30 H 0.10 -0.26 7.97 -2.39 -0.02 -0.28 16 31 H 0.06 0.21 7.97 -2.39 -0.02 0.19 16 32 H 0.08 -0.15 8.03 -2.38 -0.02 -0.16 16 33 H 0.07 -0.02 8.03 -2.39 -0.02 -0.04 16 34 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 35 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 36 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.07 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.08 -0.40 8.04 -2.39 -0.02 -0.41 16 39 H 0.09 -0.67 8.04 -2.38 -0.02 -0.69 16 40 H 0.11 -1.00 7.97 -2.38 -0.02 -1.02 16 41 H 0.08 -0.33 6.70 -2.38 -0.02 -0.34 16 42 H 0.10 -0.83 8.08 -2.39 -0.02 -0.85 16 43 H 0.10 -0.32 4.66 -2.39 -0.01 -0.33 16 44 H 0.18 -0.29 6.26 -2.91 -0.02 -0.31 16 45 H 0.15 -1.02 7.96 -2.39 -0.02 -1.04 16 46 H 0.39 -4.09 8.70 -74.06 -0.64 -4.74 16 Total: 0.00 -16.90 363.40 4.62 -12.28 By element: Atomic # 1 Polarization: -10.22 SS G_CDS: 1.09 Total: -9.14 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: 4.97 Total: 14.38 kcal Atomic # 7 Polarization: -1.09 SS G_CDS: -2.10 Total: -3.19 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: -1.95 Total: -9.40 kcal Atomic # 14 Polarization: -7.55 SS G_CDS: 2.61 Total: -4.94 kcal Total: -16.90 4.62 -12.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_13308374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.585 kcal (2) G-P(sol) polarization free energy of solvation -16.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds