Wall clock time and date at job start Sun Mar 7 2021 04:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86296 * 109.47290 * 2 1 4 4 H 1.48499 * 109.47106 * 60.00571 * 3 2 1 5 5 H 1.48502 * 109.47579 * 180.02562 * 3 2 1 6 6 H 1.48497 * 109.47184 * 300.00517 * 3 2 1 7 7 C 1.50698 * 109.47737 * 120.00557 * 2 1 3 8 8 C 1.33742 * 125.11845 * 64.99268 * 7 2 1 9 9 C 1.37800 * 115.07910 * 179.73682 * 8 7 2 10 10 C 1.34978 * 114.70272 * 0.02562 * 9 8 7 11 11 C 1.47567 * 125.27598 * 179.97438 * 10 9 8 12 12 C 1.39820 * 119.99891 * 359.71749 * 11 10 9 13 13 C 1.36559 * 120.00011 * 179.72467 * 12 11 10 14 14 C 1.39833 * 119.99978 * 0.55094 * 13 12 11 15 15 C 1.47555 * 120.00362 * 179.70112 * 14 13 12 16 16 O 1.21594 * 120.00356 * 133.64730 * 15 14 13 17 17 N 1.34781 * 119.99958 * 313.63992 * 15 14 13 18 18 C 1.46396 * 118.75211 * 182.56227 * 17 15 14 19 19 C 1.53910 * 109.06326 * 253.45056 * 18 17 15 20 20 Si 1.85195 * 107.12964 * 308.57620 * 19 18 17 21 21 C 1.87456 * 111.52618 * 168.31730 * 20 19 18 22 22 C 1.55691 * 100.84579 * 114.79960 * 21 20 19 23 23 C 1.53774 * 111.39941 * 27.99895 * 22 21 20 24 24 C 1.56403 * 109.77268 * 312.17265 * 23 22 21 25 25 C 1.85196 * 110.13932 * 43.93692 * 20 19 18 26 26 C 1.46401 * 118.74924 * 2.83609 * 17 15 14 27 27 C 1.39838 * 119.99662 * 359.71933 * 14 13 12 28 28 C 1.36565 * 119.99572 * 0.02562 * 27 14 13 29 29 S 1.75856 * 125.11825 * 244.69302 * 7 2 1 30 30 H 0.96689 * 114.00549 * 59.99688 * 1 2 3 31 31 H 1.09001 * 109.46663 * 240.00327 * 2 1 3 32 32 H 1.07997 * 122.46366 * 359.71570 * 8 7 2 33 33 H 1.08000 * 122.64680 * 179.97438 * 9 8 7 34 34 H 1.08003 * 119.99747 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.00303 * 180.25621 * 13 12 11 36 36 H 1.08997 * 109.58715 * 13.20586 * 18 17 15 37 37 H 1.09002 * 109.58345 * 133.63049 * 18 17 15 38 38 H 1.09005 * 110.00062 * 189.12644 * 19 18 17 39 39 H 1.08995 * 109.84220 * 67.93924 * 19 18 17 40 40 H 1.08999 * 111.13787 * 232.69626 * 21 20 19 41 41 H 1.08999 * 111.14218 * 356.90266 * 21 20 19 42 42 H 1.09004 * 109.09785 * 267.48153 * 22 21 20 43 43 H 1.09002 * 109.09834 * 148.50975 * 22 21 20 44 44 H 1.08997 * 109.41810 * 192.08479 * 23 22 21 45 45 H 1.08992 * 109.42507 * 72.26650 * 23 22 21 46 46 H 1.09002 * 111.49045 * 281.94414 * 24 23 22 47 47 H 1.08996 * 111.49229 * 156.83244 * 24 23 22 48 48 H 1.09001 * 109.92479 * 196.56630 * 25 20 19 49 49 H 1.08994 * 109.92739 * 75.36791 * 25 20 19 50 50 H 1.09009 * 109.58214 * 226.36645 * 26 17 15 51 51 H 1.09001 * 109.59125 * 346.79778 * 26 17 15 52 52 H 1.07995 * 120.00372 * 180.02562 * 27 14 13 53 53 H 1.08005 * 119.99688 * 180.02562 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5551 2.4564 1.2126 5 1 3.5350 1.7565 -0.0006 6 1 1.5549 2.4565 -1.2124 7 6 1.9314 -0.7105 1.2303 8 6 1.7520 -2.0089 1.4962 9 6 2.3051 -2.4444 2.6808 10 6 2.9430 -1.4895 3.3902 11 6 3.6156 -1.6977 4.6871 12 6 3.6186 -2.9650 5.2776 13 6 4.2459 -3.1589 6.4750 14 6 4.8753 -2.0874 7.1161 15 6 5.5474 -2.2954 8.4131 16 8 6.6605 -1.8432 8.6006 17 7 4.9275 -2.9865 9.3902 18 6 5.5954 -3.1281 10.6852 19 6 6.1136 -4.5702 10.8286 20 14 4.6929 -5.6995 10.4602 21 6 5.2605 -7.4740 10.2531 22 6 4.5632 -8.1487 11.4707 23 6 3.2743 -7.4065 11.8612 24 6 3.5527 -5.8696 11.9427 25 6 3.7735 -5.1017 8.9679 26 6 3.6145 -3.5723 9.1142 27 6 4.8674 -0.8187 6.5282 28 6 4.2445 -0.6261 5.3283 29 16 2.8485 0.0412 2.5290 30 1 -0.3934 0.4417 -0.7649 31 1 1.7922 -0.5138 -0.8900 32 1 1.2129 -2.6676 0.8315 33 1 2.2330 -3.4687 3.0156 34 1 3.1290 -3.7917 4.7843 35 1 4.2518 -4.1388 6.9291 36 1 6.4342 -2.4343 10.7415 37 1 4.8878 -2.9149 11.4865 38 1 6.4687 -4.7394 11.8452 39 1 6.9213 -4.7454 10.1181 40 1 4.9029 -7.8939 9.3129 41 1 6.3451 -7.5512 10.3287 42 1 5.2472 -8.1468 12.3195 43 1 4.3179 -9.1795 11.2151 44 1 2.9299 -7.7643 12.8315 45 1 2.5056 -7.5964 11.1122 46 1 4.0608 -5.6044 12.8699 47 1 2.6384 -5.2907 11.8120 48 1 2.7924 -5.5744 8.9220 49 1 4.3402 -5.3316 8.0657 50 1 2.9358 -3.3527 9.9385 51 1 3.2158 -3.1562 8.1890 52 1 5.3538 0.0088 7.0231 53 1 4.2388 0.3538 4.8740 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_13308390.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:43 Heat of formation + Delta-G solvation = -27.914638 kcal Electronic energy + Delta-G solvation = -32339.963985 eV Core-core repulsion = 28198.838288 eV Total energy + Delta-G solvation = -4141.125697 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 401.139 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.76436 -40.00107 -38.92993 -37.45942 -37.41058 -36.12859 -33.96789 -32.76650 -31.91894 -30.89729 -30.09629 -29.66384 -27.21512 -25.14682 -24.74296 -24.15120 -24.01360 -23.56078 -22.88045 -21.04532 -20.50090 -20.11219 -18.69072 -18.65233 -18.42352 -17.45925 -17.09227 -16.61428 -16.28047 -16.10521 -15.88092 -15.72764 -15.62145 -15.40724 -14.98519 -14.89503 -14.74564 -14.54344 -14.41776 -14.31670 -14.17669 -14.09109 -13.86328 -13.55018 -13.46351 -13.30321 -13.22390 -12.95012 -12.67826 -12.59851 -12.51017 -12.39949 -12.31632 -12.22021 -12.10673 -12.06912 -11.92259 -11.57123 -11.33570 -11.11731 -10.76126 -10.44132 -10.42621 -10.32866 -10.23859 -10.07662 -9.75683 -9.58452 -9.00721 -0.83853 0.28787 0.30560 0.36153 0.72927 1.08328 1.38489 1.41014 1.50250 1.75550 1.80558 1.84954 1.85445 1.90470 1.99943 2.65096 2.71241 3.31896 3.42288 3.52720 3.72705 3.80658 3.86784 4.07873 4.12731 4.15663 4.17512 4.18354 4.26902 4.31228 4.36599 4.41244 4.45229 4.48088 4.54080 4.61816 4.64007 4.67909 4.72369 4.74672 4.85722 4.90276 4.99647 5.03533 5.10846 5.13799 5.15554 5.22313 5.23506 5.26937 5.29668 5.32197 5.39921 5.40685 5.49979 5.54932 5.55779 5.59625 5.72429 6.20008 6.77272 6.99959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.034 4.034 3 Si 0.904 3.096 4 H -0.260 1.260 5 H -0.248 1.248 6 H -0.216 1.216 7 C -0.184 4.184 8 C -0.106 4.106 9 C -0.114 4.114 10 C -0.153 4.153 11 C 0.002 3.998 12 C -0.103 4.103 13 C -0.082 4.082 14 C -0.142 4.142 15 C 0.551 3.449 16 O -0.582 6.582 17 N -0.600 5.600 18 C 0.114 3.886 19 C -0.445 4.445 20 Si 1.060 2.940 21 C -0.422 4.422 22 C -0.124 4.124 23 C -0.125 4.125 24 C -0.409 4.409 25 C -0.435 4.435 26 C 0.092 3.908 27 C -0.072 4.072 28 C -0.126 4.126 29 S 0.079 5.921 30 H 0.402 0.598 31 H 0.112 0.888 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.120 0.880 49 H 0.088 0.912 50 H 0.102 0.898 51 H 0.103 0.897 52 H 0.127 0.873 53 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.240 -3.891 -2.681 7.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.147 4.147 3 Si 0.726 3.274 4 H -0.184 1.184 5 H -0.172 1.172 6 H -0.138 1.138 7 C -0.301 4.301 8 C -0.136 4.136 9 C -0.144 4.144 10 C -0.270 4.270 11 C 0.000 4.000 12 C -0.122 4.122 13 C -0.100 4.100 14 C -0.146 4.146 15 C 0.341 3.659 16 O -0.463 6.463 17 N -0.331 5.331 18 C -0.007 4.007 19 C -0.529 4.529 20 Si 1.250 2.750 21 C -0.507 4.507 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.495 4.495 25 C -0.522 4.522 26 C -0.029 4.029 27 C -0.090 4.090 28 C -0.145 4.145 29 S 0.346 5.654 30 H 0.253 0.747 31 H 0.130 0.870 32 H 0.181 0.819 33 H 0.190 0.810 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.085 0.915 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.109 0.891 48 H 0.138 0.862 49 H 0.107 0.893 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.145 0.855 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.739 -1.571 -1.768 5.296 hybrid contribution -0.102 -1.209 -0.447 1.293 sum -4.841 -2.780 -2.216 6.007 Atomic orbital electron populations 1.86467 1.16834 1.82100 1.51351 1.23899 0.85793 1.08932 0.96119 0.86153 0.81208 0.76800 0.83269 1.18400 1.17211 1.13781 1.24121 1.07376 0.98005 1.00621 1.20255 1.00585 0.94688 0.98074 1.20691 0.98094 1.01352 0.94306 1.23051 1.07852 0.96765 0.99364 1.18413 0.95928 0.94549 0.91120 1.21185 0.99660 0.96291 0.95071 1.21576 0.94256 0.99360 0.94824 1.19978 1.02830 0.95904 0.95872 1.18760 0.84854 0.77510 0.84782 1.90783 1.21068 1.52274 1.82126 1.48152 1.20371 1.52113 1.12510 1.21294 0.98103 0.97553 0.83772 1.26847 1.14593 1.05548 1.05943 0.78653 0.65072 0.64250 0.67024 1.26672 1.03508 1.20365 1.00173 1.21899 0.96845 0.99869 0.97580 1.22053 0.97504 0.94794 1.01883 1.26746 1.11077 0.97792 1.13894 1.26782 1.11292 0.98902 1.15232 1.22107 0.82466 0.93404 1.04906 1.20827 0.96925 0.96432 0.94851 1.20976 0.98982 0.99039 0.95492 1.84382 1.53991 1.12193 1.14791 0.74738 0.87003 0.81915 0.80990 0.81879 0.81785 0.91456 0.87998 0.88683 0.91959 0.89953 0.91145 0.92569 0.92346 0.92165 0.90784 0.90516 0.89077 0.86157 0.89308 0.87953 0.87887 0.85538 0.85281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.86 12.86 -148.98 -1.92 -1.05 16 2 C -0.03 0.06 2.95 71.24 0.21 0.27 16 3 Si 0.90 -0.36 26.25 68.60 1.80 1.45 16 4 H -0.26 -1.10 7.11 99.48 0.71 -0.39 16 5 H -0.25 -0.47 7.11 99.48 0.71 0.24 16 6 H -0.22 0.59 7.11 99.48 0.71 1.30 16 7 C -0.18 -0.41 5.74 24.66 0.14 -0.27 16 8 C -0.11 -0.02 10.03 21.14 0.21 0.20 16 9 C -0.11 0.08 9.64 21.42 0.21 0.29 16 10 C -0.15 -0.39 6.37 23.98 0.15 -0.24 16 11 C 0.00 0.00 5.88 -20.05 -0.12 -0.11 16 12 C -0.10 0.21 9.48 22.26 0.21 0.42 16 13 C -0.08 0.10 7.23 22.26 0.16 0.26 16 14 C -0.14 -0.65 5.01 -20.05 -0.10 -0.75 16 15 C 0.55 4.47 7.21 86.70 0.63 5.10 16 16 O -0.58 -9.98 16.27 -4.01 -0.07 -10.05 16 17 N -0.60 -0.70 2.56 -821.39 -2.10 -2.80 16 18 C 0.11 0.11 5.88 86.71 0.51 0.62 16 19 C -0.45 0.59 5.19 72.29 0.38 0.96 16 20 Si 1.06 -7.19 10.74 68.60 0.74 -6.46 16 21 C -0.42 1.39 5.84 72.91 0.43 1.82 16 22 C -0.12 0.26 6.09 31.78 0.19 0.46 16 23 C -0.12 0.49 5.97 32.04 0.19 0.68 16 24 C -0.41 2.44 5.95 73.17 0.44 2.88 16 25 C -0.44 3.83 4.71 72.48 0.34 4.17 16 26 C 0.09 -0.54 5.20 86.89 0.45 -0.08 16 27 C -0.07 -0.40 9.64 22.27 0.21 -0.19 16 28 C -0.13 -0.52 9.54 22.26 0.21 -0.31 16 29 S 0.08 0.34 19.47 -56.49 -1.10 -0.76 16 30 H 0.40 -4.37 8.74 -74.06 -0.65 -5.01 16 31 H 0.11 -0.78 7.96 -2.39 -0.02 -0.80 16 32 H 0.16 -0.58 8.06 -2.91 -0.02 -0.60 16 33 H 0.17 -1.17 6.88 -2.91 -0.02 -1.19 16 34 H 0.16 -1.34 6.74 -2.91 -0.02 -1.36 16 35 H 0.17 -0.97 4.25 -2.91 -0.01 -0.98 16 36 H 0.07 0.47 6.93 -2.39 -0.02 0.45 16 37 H 0.10 -0.43 8.08 -2.39 -0.02 -0.45 16 38 H 0.09 -0.26 7.97 -2.38 -0.02 -0.28 16 39 H 0.06 0.16 7.97 -2.39 -0.02 0.15 16 40 H 0.08 -0.35 8.03 -2.39 -0.02 -0.37 16 41 H 0.07 -0.11 8.03 -2.39 -0.02 -0.13 16 42 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 43 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.07 -0.43 8.14 -2.39 -0.02 -0.45 16 46 H 0.08 -0.38 8.04 -2.39 -0.02 -0.40 16 47 H 0.09 -0.73 8.04 -2.39 -0.02 -0.75 16 48 H 0.12 -1.53 7.97 -2.39 -0.02 -1.55 16 49 H 0.09 -0.79 5.96 -2.39 -0.01 -0.80 16 50 H 0.10 -0.98 8.08 -2.38 -0.02 -0.99 16 51 H 0.10 -0.61 4.53 -2.39 -0.01 -0.62 16 52 H 0.13 0.78 8.06 -2.91 -0.02 0.75 16 53 H 0.13 0.39 7.26 -2.91 -0.02 0.37 16 Total: 0.00 -21.20 423.17 3.45 -17.75 By element: Atomic # 1 Polarization: -15.29 SS G_CDS: 1.04 Total: -14.25 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.05 Total: 16.17 kcal Atomic # 7 Polarization: -0.70 SS G_CDS: -2.10 Total: -2.80 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.98 Total: -11.10 kcal Atomic # 14 Polarization: -7.55 SS G_CDS: 2.54 Total: -5.01 kcal Atomic # 16 Polarization: 0.34 SS G_CDS: -1.10 Total: -0.76 kcal Total: -21.20 3.45 -17.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_13308390.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.167 kcal (2) G-P(sol) polarization free energy of solvation -21.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds