Wall clock time and date at job start Sun Mar 7 2021 04:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86307 * 109.47390 * 2 1 4 4 H 1.48499 * 109.46853 * 299.99904 * 3 2 1 5 5 H 1.48499 * 109.46789 * 60.00010 * 3 2 1 6 6 H 1.48501 * 109.47030 * 179.97438 * 3 2 1 7 7 C 1.50702 * 109.47211 * 239.99925 * 2 1 3 8 8 C 1.38053 * 119.80590 * 300.02173 * 7 2 1 9 9 C 1.38708 * 120.08853 * 180.02562 * 8 7 2 10 10 O 1.35645 * 120.15487 * 179.97438 * 9 8 7 11 11 C 1.40140 * 119.69726 * 359.97438 * 9 8 7 12 12 C 1.47533 * 120.19357 * 180.02562 * 11 9 8 13 13 O 1.21592 * 119.99552 * 325.89327 * 12 11 9 14 14 N 1.34770 * 120.00016 * 145.89734 * 12 11 9 15 15 C 1.46402 * 118.75451 * 184.04743 * 14 12 11 16 16 C 1.53915 * 109.06238 * 253.44461 * 15 14 12 17 17 Si 1.85191 * 107.12777 * 308.57032 * 16 15 14 18 18 C 1.87455 * 111.52495 * 168.31584 * 17 16 15 19 19 C 1.55685 * 100.84562 * 114.79898 * 18 17 16 20 20 C 1.53777 * 111.39942 * 27.99501 * 19 18 17 21 21 C 1.56399 * 109.77442 * 312.17579 * 20 19 18 22 22 C 1.85196 * 110.14039 * 43.93376 * 17 16 15 23 23 C 1.46397 * 118.75959 * 4.30562 * 14 12 11 24 24 C 1.39717 * 119.61669 * 359.97438 * 11 9 8 25 25 C 1.37788 * 119.90745 * 0.03789 * 24 11 9 26 26 H 0.96697 * 113.99738 * 59.99880 * 1 2 3 27 27 H 1.09000 * 109.47499 * 120.00196 * 2 1 3 28 28 H 1.07999 * 119.95293 * 0.02562 * 8 7 2 29 29 H 0.96706 * 113.99958 * 90.00417 * 10 9 8 30 30 H 1.09004 * 109.58760 * 13.18850 * 15 14 12 31 31 H 1.08994 * 109.59166 * 133.61821 * 15 14 12 32 32 H 1.09001 * 110.00421 * 189.11282 * 16 15 14 33 33 H 1.09007 * 109.84127 * 67.93026 * 16 15 14 34 34 H 1.09003 * 111.13958 * 232.69470 * 18 17 16 35 35 H 1.08996 * 111.14198 * 356.90115 * 18 17 16 36 36 H 1.09003 * 109.10628 * 267.48582 * 19 18 17 37 37 H 1.08998 * 109.10327 * 148.50846 * 19 18 17 38 38 H 1.09003 * 109.42303 * 192.07679 * 20 19 18 39 39 H 1.08998 * 109.42252 * 72.26992 * 20 19 18 40 40 H 1.08998 * 111.49242 * 281.94033 * 21 20 19 41 41 H 1.09006 * 111.49297 * 156.82536 * 21 20 19 42 42 H 1.08998 * 109.92752 * 196.56435 * 22 17 16 43 43 H 1.09003 * 109.92555 * 75.36601 * 22 17 16 44 44 H 1.08994 * 109.59096 * 226.38109 * 23 14 12 45 45 H 1.08998 * 109.58376 * 346.81055 * 23 14 12 46 46 H 1.08000 * 120.04367 * 180.02562 * 24 11 9 47 47 H 1.07996 * 119.85094 * 180.26121 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 1 1.5551 2.4565 -1.2125 5 1 1.5551 2.4565 1.2125 6 1 3.5351 1.7564 0.0006 7 6 1.9313 -0.7104 -1.2305 8 6 1.5950 -2.0320 -1.4452 9 6 2.0546 -2.6918 -2.5754 10 8 1.7254 -3.9905 -2.7875 11 6 2.8606 -2.0104 -3.4974 12 6 3.3550 -2.7013 -4.7036 13 8 3.6305 -3.8847 -4.6563 14 7 3.5013 -2.0209 -5.8576 15 6 3.9078 -2.7515 -7.0594 16 6 5.3746 -2.4137 -7.3810 17 14 5.5171 -0.5674 -7.4019 18 6 7.3085 -0.0162 -7.4323 19 6 7.3806 0.6687 -8.8285 20 6 6.0121 1.2295 -9.2497 21 6 4.9054 0.1470 -9.0273 22 6 4.6071 0.1587 -5.9616 23 6 3.2533 -0.5781 -5.8609 24 6 3.1925 -0.6727 -3.2682 25 6 2.7273 -0.0331 -2.1400 26 1 -0.3933 0.4417 -0.7650 27 1 1.7924 -0.5138 0.8899 28 1 0.9732 -2.5529 -0.7321 29 1 0.9088 -4.1121 -3.2911 30 1 3.8128 -3.8233 -6.8850 31 1 3.2752 -2.4580 -7.8970 32 1 5.6451 -2.8183 -8.3563 33 1 6.0268 -2.8280 -6.6121 34 1 7.5141 0.6966 -6.6336 35 1 7.9836 -0.8702 -7.3779 36 1 7.7095 -0.0617 -9.5677 37 1 8.1033 1.4837 -8.7892 38 1 6.0423 1.5058 -10.3037 39 1 5.7820 2.1112 -8.6516 40 1 4.9131 -0.6008 -9.8203 41 1 3.9198 0.5998 -8.9188 42 1 4.4394 1.2230 -6.1264 43 1 5.1803 0.0093 -5.0465 44 1 2.6303 -0.3162 -6.7160 45 1 2.7494 -0.2919 -4.9377 46 1 3.8129 -0.1409 -3.9744 47 1 2.9809 1.0022 -1.9659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15733048_13422076.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:46:57 Heat of formation + Delta-G solvation = -92.525074 kcal Electronic energy + Delta-G solvation = -27703.914271 eV Core-core repulsion = 23976.132217 eV Total energy + Delta-G solvation = -3727.782054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.151 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.98817 -40.13146 -38.58249 -37.54910 -36.91389 -36.29028 -33.81005 -31.96221 -31.17829 -30.49736 -29.85054 -27.46832 -25.14529 -24.54591 -24.19969 -23.85201 -22.70495 -21.19343 -20.70798 -19.21150 -18.59568 -18.36365 -17.37207 -17.17989 -16.55938 -16.33577 -16.13058 -16.06436 -15.95752 -15.71051 -15.54838 -15.29209 -14.91745 -14.45356 -14.38459 -14.23307 -14.09104 -13.73522 -13.63917 -13.39070 -13.19945 -12.92288 -12.77838 -12.54941 -12.47319 -12.40919 -12.27144 -12.17908 -12.10132 -12.07892 -11.52108 -11.49263 -10.85142 -10.67620 -10.57250 -10.55854 -10.38219 -9.90293 -9.86133 -9.66314 -0.34837 0.07336 1.01231 1.32154 1.40347 1.54781 1.61262 1.69101 1.74680 1.80988 1.91983 2.44075 2.49012 3.03924 3.30235 3.37248 3.49746 3.72785 3.87142 3.91583 3.93756 3.99210 4.01807 4.18618 4.20495 4.25151 4.30888 4.35212 4.39135 4.50615 4.54345 4.56468 4.61049 4.69784 4.73403 4.87521 4.93701 4.96534 4.98544 5.03568 5.09225 5.10726 5.19254 5.22195 5.27793 5.38480 5.39892 5.51297 5.55400 6.26561 6.40469 6.64511 7.19314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.086 4.086 3 Si 0.950 3.050 4 H -0.249 1.249 5 H -0.252 1.252 6 H -0.248 1.248 7 C -0.080 4.080 8 C -0.124 4.124 9 C 0.166 3.834 10 O -0.478 6.478 11 C -0.160 4.160 12 C 0.555 3.445 13 O -0.512 6.512 14 N -0.610 5.610 15 C 0.122 3.878 16 C -0.431 4.431 17 Si 1.003 2.997 18 C -0.407 4.407 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.403 4.403 22 C -0.441 4.441 23 C 0.083 3.917 24 C -0.091 4.091 25 C -0.145 4.145 26 H 0.377 0.623 27 H 0.123 0.877 28 H 0.142 0.858 29 H 0.394 0.606 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.161 0.839 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.667 5.625 -2.440 6.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.340 6.340 2 C -0.196 4.196 3 Si 0.772 3.228 4 H -0.172 1.172 5 H -0.175 1.175 6 H -0.172 1.172 7 C -0.080 4.080 8 C -0.143 4.143 9 C 0.120 3.880 10 O -0.288 6.288 11 C -0.164 4.164 12 C 0.343 3.657 13 O -0.387 6.387 14 N -0.345 5.345 15 C 0.001 3.999 16 C -0.517 4.517 17 Si 1.196 2.804 18 C -0.493 4.493 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.490 4.490 22 C -0.527 4.527 23 C -0.039 4.039 24 C -0.108 4.108 25 C -0.163 4.163 26 H 0.224 0.776 27 H 0.141 0.859 28 H 0.160 0.840 29 H 0.251 0.749 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.099 0.901 45 H 0.131 0.869 46 H 0.178 0.822 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.648 5.354 -1.542 5.609 hybrid contribution -0.415 -0.006 -0.873 0.967 sum -1.063 5.348 -2.415 5.964 Atomic orbital electron populations 1.86547 1.16792 1.81550 1.49123 1.25103 0.85378 1.10948 0.98212 0.85662 0.80669 0.74848 0.81571 1.17245 1.17543 1.17197 1.20413 0.96783 0.94460 0.96381 1.21295 1.01071 0.93822 0.98080 1.18474 0.94173 0.83352 0.92002 1.84842 1.46953 1.19871 1.77151 1.20385 1.04397 0.94705 0.96887 1.18218 0.78008 0.86545 0.82897 1.90848 1.48655 1.15116 1.84104 1.47975 1.68507 1.08526 1.09458 1.21183 0.94432 0.98676 0.85658 1.26585 0.99104 1.20933 1.05114 0.79477 0.67576 0.66401 0.66921 1.26490 1.18832 1.04943 0.99080 1.21844 0.97301 1.00297 0.96218 1.22021 0.93642 0.98299 1.01886 1.26664 1.01313 1.04795 1.16243 1.26779 1.04335 1.06243 1.15358 1.22328 0.97056 0.79050 1.05483 1.21942 0.98863 0.92897 0.97133 1.21030 1.00043 1.00431 0.94810 0.77575 0.85923 0.83985 0.74868 0.88583 0.90519 0.89152 0.89993 0.90447 0.90250 0.91960 0.91872 0.91586 0.91821 0.90180 0.90321 0.88541 0.89503 0.90127 0.86871 0.82175 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.55 12.76 -35.23 -0.45 0.10 16 2 C -0.09 0.14 2.81 36.01 0.10 0.24 16 3 Si 0.95 -1.81 25.05 -169.99 -4.26 -6.07 16 4 H -0.25 0.55 7.11 56.52 0.40 0.96 16 5 H -0.25 0.05 7.11 56.52 0.40 0.45 16 6 H -0.25 0.33 7.11 56.52 0.40 0.73 16 7 C -0.08 0.05 5.39 -104.57 -0.56 -0.52 16 8 C -0.12 -0.07 9.53 -39.48 -0.38 -0.45 16 9 C 0.17 0.34 6.68 -38.69 -0.26 0.08 16 10 O -0.48 -1.29 12.11 -36.73 -0.44 -1.74 16 11 C -0.16 -0.28 5.47 -104.84 -0.57 -0.86 16 12 C 0.56 1.78 7.25 -12.47 -0.09 1.69 16 13 O -0.51 -3.69 15.18 -12.81 -0.19 -3.89 16 14 N -0.61 -0.09 2.56 -173.61 -0.44 -0.53 16 15 C 0.12 -0.02 5.87 -3.62 -0.02 -0.04 16 16 C -0.43 0.46 5.19 37.63 0.20 0.65 16 17 Si 1.00 -2.95 10.74 -169.99 -1.83 -4.77 16 18 C -0.41 0.59 5.84 38.59 0.23 0.82 16 19 C -0.12 0.13 6.09 -24.90 -0.15 -0.03 16 20 C -0.12 0.19 5.97 -24.50 -0.15 0.04 16 21 C -0.40 0.98 5.95 38.98 0.23 1.21 16 22 C -0.44 1.49 4.45 37.92 0.17 1.65 16 23 C 0.08 -0.21 5.19 -3.33 -0.02 -0.23 16 24 C -0.09 0.05 7.33 -39.19 -0.29 -0.24 16 25 C -0.15 0.16 8.64 -39.63 -0.34 -0.18 16 26 H 0.38 -1.68 8.70 45.56 0.40 -1.28 16 27 H 0.12 -0.25 7.96 -51.93 -0.41 -0.66 16 28 H 0.14 0.02 8.06 -52.49 -0.42 -0.41 16 29 H 0.39 -0.70 9.06 45.56 0.41 -0.29 16 30 H 0.10 0.18 6.94 -51.93 -0.36 -0.18 16 31 H 0.08 -0.17 8.08 -51.93 -0.42 -0.59 16 32 H 0.09 -0.17 7.97 -51.93 -0.41 -0.58 16 33 H 0.08 0.04 7.97 -51.92 -0.41 -0.37 16 34 H 0.08 -0.12 8.03 -51.93 -0.42 -0.54 16 35 H 0.08 -0.08 8.03 -51.93 -0.42 -0.50 16 36 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 37 H 0.06 -0.05 8.14 -51.93 -0.42 -0.48 16 38 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 39 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 40 H 0.08 -0.17 8.04 -51.93 -0.42 -0.59 16 41 H 0.08 -0.23 8.04 -51.93 -0.42 -0.65 16 42 H 0.10 -0.46 7.97 -51.93 -0.41 -0.87 16 43 H 0.09 -0.27 6.72 -51.93 -0.35 -0.62 16 44 H 0.08 -0.33 8.08 -51.93 -0.42 -0.75 16 45 H 0.11 -0.33 3.66 -55.94 -0.20 -0.54 16 46 H 0.16 -0.39 3.26 -52.49 -0.17 -0.56 16 47 H 0.13 -0.36 4.85 -52.49 -0.25 -0.62 16 LS Contribution 361.38 15.07 5.45 5.45 Total: 0.00 -8.42 361.38 -9.68 -18.10 By element: Atomic # 1 Polarization: -4.88 SS G_CDS: -5.60 Total: -10.49 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -1.91 Total: 3.84 kcal Atomic # 7 Polarization: -0.09 SS G_CDS: -0.44 Total: -0.53 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -1.09 Total: -5.52 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: -6.08 Total: -10.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -8.42 -9.68 -18.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_13422076.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.428 kcal (2) G-P(sol) polarization free energy of solvation -8.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds